Wall clock time and date at job start Mon Mar 30 2020 06:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37998 * 120.05091 * 2 1 4 4 C 1.38894 * 120.70089 * 180.02562 * 3 2 1 5 5 C 1.36472 * 120.58941 * 359.97438 * 4 3 2 6 6 C 1.40446 * 119.80198 * 0.02562 * 5 4 3 7 7 C 1.40937 * 133.09465 * 179.97438 * 6 5 4 8 8 C 1.39124 * 107.50000 * 180.02562 * 7 6 5 9 9 C 1.39924 * 125.69495 * 180.02562 * 8 7 6 10 10 H 1.07997 * 120.00050 * 179.97438 * 9 8 7 11 11 C 1.40188 * 119.99460 * 359.96757 * 9 8 7 12 12 N 1.30745 * 120.00618 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99486 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47023 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46684 * 120.00180 * 13 11 9 16 16 H 1.48498 * 109.47207 * 240.00099 * 13 11 9 17 17 N 1.38315 * 108.61352 * 359.97438 * 8 7 6 18 18 C 1.46501 * 125.60027 * 179.97438 * 17 8 7 19 19 C 1.53004 * 109.47217 * 304.46928 * 18 17 8 20 20 C 1.52994 * 109.47317 * 64.47378 * 18 17 8 21 21 C 1.38047 * 108.79831 * 0.23236 * 17 8 7 22 22 H 1.09001 * 109.47420 * 97.99255 * 1 2 3 23 23 H 1.08997 * 109.47221 * 217.99266 * 1 2 3 24 24 H 1.09002 * 109.47275 * 337.99746 * 1 2 3 25 25 H 1.08007 * 119.65440 * 0.02562 * 3 2 1 26 26 H 1.07996 * 119.71147 * 180.02562 * 4 3 2 27 27 H 1.07999 * 120.09852 * 180.02562 * 5 4 3 28 28 H 1.07998 * 126.24988 * 0.05695 * 7 6 5 29 29 H 0.96995 * 120.00152 * 179.97438 * 12 11 9 30 30 H 1.08999 * 109.46912 * 184.47313 * 18 17 8 31 31 H 1.08998 * 109.47403 * 180.02562 * 19 18 17 32 32 H 1.09002 * 109.46629 * 59.99896 * 19 18 17 33 33 H 1.09000 * 109.47458 * 300.00636 * 19 18 17 34 34 H 1.08999 * 109.47076 * 299.99835 * 20 18 17 35 35 H 1.09000 * 109.47448 * 59.99913 * 20 18 17 36 36 H 1.09008 * 109.47121 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1945 0.0000 4 6 3.5869 1.2102 -0.0005 5 6 4.2947 0.0434 -0.0005 6 6 3.6147 -1.1855 -0.0006 7 6 4.0490 -2.5263 -0.0010 8 6 2.9156 -3.3331 -0.0014 9 6 2.9095 -4.7323 -0.0014 10 1 1.9719 -5.2683 -0.0012 11 6 4.1206 -5.4384 -0.0017 12 7 5.2557 -4.7896 -0.0015 13 14 4.1125 -7.3065 -0.0024 14 1 2.7103 -7.7954 -0.0032 15 1 4.8104 -7.8039 -1.2152 16 1 4.8104 -7.8050 1.2099 17 7 1.7957 -2.5213 -0.0005 18 6 0.4061 -2.9852 -0.0011 19 6 0.1809 -3.9198 -1.1914 20 6 0.1191 -3.7377 1.2997 21 6 2.2026 -1.2021 -0.0049 22 1 -0.3634 -0.1429 -1.0177 23 1 -0.3633 -0.8099 0.6326 24 1 -0.3634 0.9528 0.3850 25 1 1.6532 2.1271 0.0004 26 1 4.1115 2.1542 -0.0001 27 1 5.3745 0.0649 -0.0005 28 1 5.0743 -2.8654 -0.0006 29 1 6.0936 -5.2782 -0.0013 30 1 -0.2629 -2.1283 -0.0803 31 1 -0.8531 -4.2646 -1.1921 32 1 0.8500 -4.7766 -1.1121 33 1 0.3854 -3.3837 -2.1181 34 1 0.7881 -4.5945 1.3790 35 1 0.2795 -3.0719 2.1477 36 1 -0.9148 -4.0832 1.2991 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261084250.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:46 Heat of formation + Delta-G solvation = 30.132642 kcal Electronic energy + Delta-G solvation = -17746.541511 eV Core-core repulsion = 15194.905681 eV Total energy + Delta-G solvation = -2551.635830 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.73612 -38.07439 -36.09039 -35.01547 -33.26609 -30.39110 -29.76277 -28.06129 -27.32874 -26.85620 -22.92214 -22.61526 -21.64264 -20.01875 -18.72257 -17.55013 -17.12606 -16.05471 -15.67990 -15.52169 -15.11922 -14.89396 -14.30332 -14.13593 -13.90828 -13.73488 -13.55525 -13.23791 -12.97860 -12.93764 -12.85251 -12.77511 -12.31082 -12.19656 -12.08986 -11.72736 -11.68321 -11.26510 -11.06731 -10.97508 -9.91564 -8.82772 -8.48248 -8.03274 -6.25576 0.61496 1.14252 1.39358 1.42044 1.55072 2.15516 2.28759 2.52777 3.27937 3.53004 3.88685 4.12576 4.21992 4.27390 4.31815 4.43994 4.62678 4.74495 4.76000 4.80665 4.87247 4.89929 4.93223 5.00673 5.03883 5.18439 5.29183 5.37968 5.39202 5.50572 5.68221 5.92418 5.94922 6.09372 6.11850 6.26767 6.57123 6.82915 6.90689 7.20574 7.38305 8.38410 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.025102 B = 0.009148 C = 0.007024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.202032 B = 3060.174600 C = 3985.134104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.098 4.098 3 C -0.174 4.174 4 C -0.135 4.135 5 C -0.164 4.164 6 C -0.085 4.085 7 C -0.379 4.379 8 C 0.252 3.748 9 C -0.459 4.459 10 H 0.099 0.901 11 C 0.023 3.977 12 N -0.815 5.815 13 Si 0.996 3.004 14 H -0.248 1.248 15 H -0.269 1.269 16 H -0.269 1.269 17 N -0.505 5.505 18 C 0.121 3.879 19 C -0.165 4.165 20 C -0.159 4.159 21 C 0.024 3.976 22 H 0.069 0.931 23 H 0.065 0.935 24 H 0.085 0.915 25 H 0.139 0.861 26 H 0.131 0.869 27 H 0.099 0.901 28 H 0.138 0.862 29 H 0.283 0.717 30 H 0.113 0.887 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.041 0.959 34 H 0.054 0.946 35 H 0.042 0.958 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.572 1.332 0.061 9.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.101 4.101 3 C -0.193 4.193 4 C -0.154 4.154 5 C -0.183 4.183 6 C -0.090 4.090 7 C -0.403 4.403 8 C 0.145 3.855 9 C -0.492 4.492 10 H 0.117 0.883 11 C -0.192 4.192 12 N -0.441 5.441 13 Si 0.816 3.184 14 H -0.171 1.171 15 H -0.194 1.194 16 H -0.194 1.194 17 N -0.194 5.194 18 C 0.020 3.980 19 C -0.223 4.223 20 C -0.217 4.217 21 C -0.080 4.080 22 H 0.087 0.913 23 H 0.084 0.916 24 H 0.104 0.896 25 H 0.157 0.843 26 H 0.149 0.851 27 H 0.117 0.883 28 H 0.155 0.845 29 H 0.094 0.906 30 H 0.130 0.870 31 H 0.115 0.885 32 H 0.082 0.918 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.645 1.192 0.062 9.718 hybrid contribution 0.968 -0.685 -0.016 1.186 sum -8.677 0.507 0.047 8.692 Atomic orbital electron populations 1.20888 0.90134 1.03180 1.02003 1.19147 0.96336 0.90027 1.04598 1.20651 0.93778 0.96334 1.08533 1.20586 0.94619 0.96907 1.03295 1.20344 0.98391 0.91745 1.07789 1.18861 0.93423 0.94730 1.01944 1.21750 0.99296 0.89792 1.29413 1.18320 0.83666 0.91261 0.92216 1.19262 0.94858 0.89085 1.45988 0.88276 1.26887 0.94040 1.06281 0.92009 1.69880 0.99555 1.39243 1.35463 0.84940 0.80109 0.74730 0.78641 1.17088 1.19373 1.19372 1.44557 1.05425 1.02981 1.66478 1.21680 0.80670 0.98915 0.96766 1.22273 1.03390 1.00162 0.96457 1.22173 1.03092 1.00608 0.95839 1.18460 0.93492 0.85566 1.10441 0.91256 0.91641 0.89615 0.84339 0.85121 0.88307 0.84513 0.90561 0.86959 0.88509 0.91806 0.94004 0.92688 0.93837 0.88390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.14 8.64 71.24 0.62 -2.53 16 2 C -0.10 -3.95 5.89 -19.76 -0.12 -4.06 16 3 C -0.17 -6.52 9.65 22.37 0.22 -6.30 16 4 C -0.13 -5.38 9.97 22.01 0.22 -5.16 16 5 C -0.16 -7.83 10.08 22.40 0.23 -7.61 16 6 C -0.08 -4.60 6.14 -21.35 -0.13 -4.73 16 7 C -0.38 -22.41 9.80 23.14 0.23 -22.19 16 8 C 0.25 13.73 6.23 38.74 0.24 13.97 16 9 C -0.46 -23.48 7.40 23.15 0.17 -23.31 16 10 H 0.10 4.60 4.35 -2.91 -0.01 4.59 16 11 C 0.02 1.15 5.50 85.33 0.47 1.62 16 12 N -0.82 -43.53 10.18 21.87 0.22 -43.30 16 13 Si 1.00 37.11 29.56 68.60 2.03 39.14 16 14 H -0.25 -8.59 7.11 99.48 0.71 -7.88 16 15 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 16 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 17 N -0.50 -23.92 2.70 -484.45 -1.31 -25.23 16 18 C 0.12 4.36 3.09 44.99 0.14 4.50 16 19 C -0.17 -5.47 9.11 71.98 0.66 -4.81 16 20 C -0.16 -5.20 9.24 71.98 0.66 -4.54 16 21 C 0.02 1.16 6.74 39.05 0.26 1.42 16 22 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.07 1.90 5.70 -2.39 -0.01 1.88 16 24 H 0.09 2.05 8.02 -2.39 -0.02 2.03 16 25 H 0.14 4.07 8.04 -2.91 -0.02 4.05 16 26 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 27 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 28 H 0.14 8.59 5.58 -2.91 -0.02 8.58 16 29 H 0.28 13.69 8.29 -92.71 -0.77 12.92 16 30 H 0.11 3.54 4.10 -2.39 -0.01 3.53 16 31 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.06 2.39 4.99 -2.39 -0.01 2.38 16 33 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.05 2.04 5.96 -2.39 -0.01 2.02 16 35 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 Total: -1.00 -64.92 283.10 5.89 -59.03 By element: Atomic # 1 Polarization: 33.01 SS G_CDS: 1.09 Total: 34.09 kcal Atomic # 6 Polarization: -67.59 SS G_CDS: 3.86 Total: -63.73 kcal Atomic # 7 Polarization: -67.45 SS G_CDS: -1.09 Total: -68.53 kcal Atomic # 14 Polarization: 37.11 SS G_CDS: 2.03 Total: 39.14 kcal Total: -64.92 5.89 -59.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261084250.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.159 kcal (2) G-P(sol) polarization free energy of solvation -64.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds