Wall clock time and date at job start Mon Mar 30 2020 05:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38896 * 125.35199 * 2 1 4 4 C 1.40890 * 126.93259 * 0.02562 * 3 2 1 5 5 H 1.07995 * 120.00246 * 30.96841 * 4 3 2 6 6 C 1.39749 * 119.99703 * 210.96449 * 4 3 2 7 7 N 1.31049 * 119.99621 * 19.44449 * 6 4 3 8 8 Si 1.86800 * 119.99883 * 199.44018 * 6 4 3 9 9 H 1.48500 * 109.46936 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47002 * 120.00172 * 8 6 4 11 11 H 1.48505 * 109.46821 * 240.00367 * 8 6 4 12 12 C 1.47674 * 106.13137 * 180.02562 * 3 2 1 13 13 C 1.39196 * 133.76840 * 180.02562 * 12 3 2 14 14 C 1.37875 * 119.69155 * 179.97438 * 13 12 3 15 15 C 1.38666 * 120.25413 * 359.97069 * 14 13 12 16 16 C 1.37869 * 120.62322 * 0.02605 * 15 14 13 17 17 C 1.39126 * 119.97060 * 359.71674 * 16 15 14 18 18 N 1.35636 * 125.35986 * 180.02562 * 2 1 3 19 19 C 1.46503 * 124.69205 * 0.02562 * 18 2 1 20 20 C 1.53004 * 109.46736 * 120.00061 * 19 18 2 21 21 C 1.52990 * 109.47013 * 239.99963 * 19 18 2 22 22 H 1.08996 * 109.47409 * 269.99511 * 1 2 3 23 23 H 1.09002 * 109.47500 * 30.00162 * 1 2 3 24 24 H 1.09010 * 109.46757 * 149.99779 * 1 2 3 25 25 H 0.97008 * 119.99622 * 174.97513 * 7 6 4 26 26 H 1.08002 * 120.15309 * 359.97438 * 13 12 3 27 27 H 1.07998 * 119.87230 * 180.02562 * 14 13 12 28 28 H 1.07994 * 119.69532 * 180.02562 * 15 14 13 29 29 H 1.08001 * 120.01610 * 180.02562 * 16 15 14 30 30 H 1.09000 * 109.46851 * 359.97438 * 19 18 2 31 31 H 1.09004 * 109.46500 * 180.02562 * 20 19 18 32 32 H 1.08991 * 109.47313 * 60.00223 * 20 19 18 33 33 H 1.09003 * 109.47261 * 299.99534 * 20 19 18 34 34 H 1.09003 * 109.47732 * 299.99997 * 21 19 18 35 35 H 1.09003 * 109.47723 * 60.00272 * 21 19 18 36 36 H 1.09003 * 109.47352 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3107 1.1329 0.0000 4 6 1.8820 2.4749 0.0005 5 1 0.9539 2.7452 0.4822 6 6 2.6577 3.4565 -0.6222 7 7 3.5551 3.1143 -1.5139 8 14 2.4154 5.2560 -0.1837 9 1 1.3484 5.3761 0.8421 10 1 3.6842 5.8097 0.3536 11 1 2.0204 6.0127 -1.3990 12 6 3.7051 0.6467 -0.0006 13 6 4.9452 1.2789 -0.0005 14 6 6.0976 0.5220 -0.0007 15 6 6.0240 -0.8627 -0.0005 16 6 4.8020 -1.5011 -0.0006 17 6 3.6280 -0.7546 0.0051 18 7 2.2920 -1.1062 -0.0005 19 6 1.7922 -2.4833 -0.0016 20 6 2.2967 -3.2078 -1.2513 21 6 2.2957 -3.2096 1.2472 22 1 -0.3634 -0.0001 1.0276 23 1 -0.3634 0.8900 -0.5139 24 1 -0.3633 -0.8901 -0.5139 25 1 4.0424 3.7987 -1.9989 26 1 5.0044 2.3573 -0.0002 27 1 7.0614 1.0094 -0.0002 28 1 6.9324 -1.4468 -0.0002 29 1 4.7561 -2.5801 0.0000 30 1 0.7022 -2.4742 -0.0016 31 1 1.9244 -4.2323 -1.2523 32 1 3.3865 -3.2169 -1.2509 33 1 1.9379 -2.6904 -2.1410 34 1 3.3857 -3.2187 1.2477 35 1 1.9363 -2.6934 2.1375 36 1 1.9234 -4.2341 1.2466 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261100535.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:56 Heat of formation + Delta-G solvation = 43.771094 kcal Electronic energy + Delta-G solvation = -17732.048873 eV Core-core repulsion = 15181.004451 eV Total energy + Delta-G solvation = -2551.044422 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.98171 -36.18788 -34.56900 -32.92826 -30.16604 -29.44438 -28.34278 -26.95152 -26.31832 -24.18311 -21.74925 -20.48938 -19.77924 -18.49203 -16.56871 -15.53829 -15.18044 -14.70030 -14.08687 -14.02510 -13.81609 -13.23835 -12.53959 -12.42377 -12.34672 -12.12466 -12.02068 -11.73651 -11.58169 -11.46567 -11.15710 -11.04750 -10.91631 -10.67297 -10.54991 -10.03410 -9.99954 -9.82380 -9.28031 -8.86541 -8.11637 -6.77633 -6.56437 -6.21863 -3.91821 2.42059 2.84742 3.10440 3.21527 3.26464 3.97888 4.06153 4.17880 5.01100 5.08957 5.43202 5.45103 5.54081 5.69582 5.77199 5.93580 6.01767 6.05280 6.08378 6.14656 6.25786 6.29274 6.43787 6.48578 6.56451 6.67946 6.82434 6.99469 7.02750 7.21589 7.39606 7.46285 7.63539 7.84490 8.06629 8.30134 8.48133 8.74189 8.81794 9.17220 9.21434 10.52937 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.023849 B = 0.009503 C = 0.007307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.785759 B = 2945.753181 C = 3830.983645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.125 4.125 3 C 0.075 3.925 4 C -0.457 4.457 5 H 0.074 0.926 6 C 0.079 3.921 7 N -0.809 5.809 8 Si 0.896 3.104 9 H -0.264 1.264 10 H -0.276 1.276 11 H -0.279 1.279 12 C -0.100 4.100 13 C -0.011 4.011 14 C -0.206 4.206 15 C -0.111 4.111 16 C -0.168 4.168 17 C 0.106 3.894 18 N -0.468 5.468 19 C 0.139 3.861 20 C -0.164 4.164 21 C -0.164 4.164 22 H 0.038 0.962 23 H 0.067 0.933 24 H 0.035 0.965 25 H 0.273 0.727 26 H 0.117 0.883 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.693 -7.516 1.958 7.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.226 4.226 3 C 0.069 3.931 4 C -0.489 4.489 5 H 0.092 0.908 6 C -0.135 4.135 7 N -0.437 5.437 8 Si 0.722 3.278 9 H -0.188 1.188 10 H -0.201 1.201 11 H -0.205 1.205 12 C -0.107 4.107 13 C -0.030 4.030 14 C -0.226 4.226 15 C -0.130 4.130 16 C -0.189 4.189 17 C -0.002 4.002 18 N -0.154 5.154 19 C 0.035 3.965 20 C -0.222 4.222 21 C -0.222 4.222 22 H 0.056 0.944 23 H 0.086 0.914 24 H 0.054 0.946 25 H 0.084 0.916 26 H 0.135 0.865 27 H 0.117 0.883 28 H 0.119 0.881 29 H 0.116 0.884 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.717 -7.690 1.842 7.940 hybrid contribution 0.032 0.783 0.006 0.784 sum -0.684 -6.907 1.848 7.183 Atomic orbital electron populations 1.19786 0.90330 1.00603 0.99464 1.20192 0.91685 0.84890 1.25827 1.17804 0.87714 0.91460 0.96128 1.18540 1.06536 0.90334 1.33531 0.90788 1.25679 0.93746 1.00372 0.93752 1.69963 1.20860 1.35007 1.17823 0.86470 0.79010 0.83186 0.79167 1.18797 1.20098 1.20494 1.19287 0.94409 0.90791 1.06167 1.20641 0.90340 0.99384 0.92612 1.20599 0.97285 0.93627 1.11085 1.20408 0.95455 0.94472 1.02649 1.19758 0.90518 0.97068 1.11578 1.18118 0.83906 0.94316 1.03897 1.43017 1.03194 1.03657 1.65552 1.20950 0.98928 0.81682 0.94941 1.22210 1.02502 0.99487 0.97995 1.22223 1.02487 0.99555 0.97947 0.94377 0.91432 0.94594 0.91616 0.86471 0.88277 0.88115 0.88415 0.89662 0.92168 0.91743 0.92191 0.91744 0.92315 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.88 9.67 36.01 0.35 -0.54 16 2 C -0.12 -2.99 6.96 -80.67 -0.56 -3.55 16 3 C 0.07 2.02 5.72 -104.80 -0.60 1.42 16 4 C -0.46 -12.33 8.85 -38.01 -0.34 -12.67 16 5 H 0.07 1.94 7.91 -52.49 -0.42 1.52 16 6 C 0.08 2.05 4.89 -17.32 -0.08 1.97 16 7 N -0.81 -21.61 10.31 55.54 0.57 -21.04 16 8 Si 0.90 19.45 29.61 -169.99 -5.03 14.41 16 9 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 10 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 11 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 12 C -0.10 -2.63 5.78 -104.90 -0.61 -3.24 16 13 C -0.01 -0.28 8.75 -39.36 -0.34 -0.62 16 14 C -0.21 -4.47 10.03 -39.56 -0.40 -4.86 16 15 C -0.11 -2.23 10.01 -39.56 -0.40 -2.62 16 16 C -0.17 -3.48 8.42 -39.39 -0.33 -3.81 16 17 C 0.11 2.49 6.14 -83.90 -0.51 1.98 16 18 N -0.47 -10.24 2.62 -101.83 -0.27 -10.50 16 19 C 0.14 2.35 3.38 -67.93 -0.23 2.12 16 20 C -0.16 -2.49 9.22 37.16 0.34 -2.15 16 21 C -0.16 -2.42 9.21 37.15 0.34 -2.08 16 22 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.07 1.37 7.91 -51.93 -0.41 0.96 16 24 H 0.04 0.62 6.92 -51.92 -0.36 0.26 16 25 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 26 H 0.12 3.02 6.31 -52.49 -0.33 2.68 16 27 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 28 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 29 H 0.10 1.76 5.60 -52.49 -0.29 1.47 16 30 H 0.09 1.35 6.43 -51.93 -0.33 1.02 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 1.03 5.95 -51.93 -0.31 0.72 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.99 5.95 -51.93 -0.31 0.68 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 289.00 15.07 4.36 4.36 Total: -1.00 -28.84 289.00 -8.60 -37.43 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -4.86 Total: 4.01 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: -3.37 Total: -28.67 kcal Atomic # 7 Polarization: -31.84 SS G_CDS: 0.31 Total: -31.54 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.41 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.84 -8.60 -37.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261100535.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.205 kcal (2) G-P(sol) polarization free energy of solvation -28.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds