Wall clock time and date at job start Mon Mar 30 2020 05:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38896 * 125.35199 * 2 1 4 4 C 1.40890 * 126.93259 * 0.02562 * 3 2 1 5 5 H 1.07995 * 120.00246 * 30.96841 * 4 3 2 6 6 C 1.39749 * 119.99703 * 210.96449 * 4 3 2 7 7 N 1.31049 * 119.99621 * 19.44449 * 6 4 3 8 8 Si 1.86800 * 119.99883 * 199.44018 * 6 4 3 9 9 H 1.48500 * 109.46936 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47002 * 120.00172 * 8 6 4 11 11 H 1.48505 * 109.46821 * 240.00367 * 8 6 4 12 12 C 1.47674 * 106.13137 * 180.02562 * 3 2 1 13 13 C 1.39196 * 133.76840 * 180.02562 * 12 3 2 14 14 C 1.37875 * 119.69155 * 179.97438 * 13 12 3 15 15 C 1.38666 * 120.25413 * 359.97069 * 14 13 12 16 16 C 1.37869 * 120.62322 * 0.02605 * 15 14 13 17 17 C 1.39126 * 119.97060 * 359.71674 * 16 15 14 18 18 N 1.35636 * 125.35986 * 180.02562 * 2 1 3 19 19 C 1.46503 * 124.69205 * 0.02562 * 18 2 1 20 20 C 1.53004 * 109.46736 * 120.00061 * 19 18 2 21 21 C 1.52990 * 109.47013 * 239.99963 * 19 18 2 22 22 H 1.08996 * 109.47409 * 269.99511 * 1 2 3 23 23 H 1.09002 * 109.47500 * 30.00162 * 1 2 3 24 24 H 1.09010 * 109.46757 * 149.99779 * 1 2 3 25 25 H 0.97008 * 119.99622 * 174.97513 * 7 6 4 26 26 H 1.08002 * 120.15309 * 359.97438 * 13 12 3 27 27 H 1.07998 * 119.87230 * 180.02562 * 14 13 12 28 28 H 1.07994 * 119.69532 * 180.02562 * 15 14 13 29 29 H 1.08001 * 120.01610 * 180.02562 * 16 15 14 30 30 H 1.09000 * 109.46851 * 359.97438 * 19 18 2 31 31 H 1.09004 * 109.46500 * 180.02562 * 20 19 18 32 32 H 1.08991 * 109.47313 * 60.00223 * 20 19 18 33 33 H 1.09003 * 109.47261 * 299.99534 * 20 19 18 34 34 H 1.09003 * 109.47732 * 299.99997 * 21 19 18 35 35 H 1.09003 * 109.47723 * 60.00272 * 21 19 18 36 36 H 1.09003 * 109.47352 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3107 1.1329 0.0000 4 6 1.8820 2.4749 0.0005 5 1 0.9539 2.7452 0.4822 6 6 2.6577 3.4565 -0.6222 7 7 3.5551 3.1143 -1.5139 8 14 2.4154 5.2560 -0.1837 9 1 1.3484 5.3761 0.8421 10 1 3.6842 5.8097 0.3536 11 1 2.0204 6.0127 -1.3990 12 6 3.7051 0.6467 -0.0006 13 6 4.9452 1.2789 -0.0005 14 6 6.0976 0.5220 -0.0007 15 6 6.0240 -0.8627 -0.0005 16 6 4.8020 -1.5011 -0.0006 17 6 3.6280 -0.7546 0.0051 18 7 2.2920 -1.1062 -0.0005 19 6 1.7922 -2.4833 -0.0016 20 6 2.2967 -3.2078 -1.2513 21 6 2.2957 -3.2096 1.2472 22 1 -0.3634 -0.0001 1.0276 23 1 -0.3634 0.8900 -0.5139 24 1 -0.3633 -0.8901 -0.5139 25 1 4.0424 3.7987 -1.9989 26 1 5.0044 2.3573 -0.0002 27 1 7.0614 1.0094 -0.0002 28 1 6.9324 -1.4468 -0.0002 29 1 4.7561 -2.5801 0.0000 30 1 0.7022 -2.4742 -0.0016 31 1 1.9244 -4.2323 -1.2523 32 1 3.3865 -3.2169 -1.2509 33 1 1.9379 -2.6904 -2.1410 34 1 3.3857 -3.2187 1.2477 35 1 1.9363 -2.6934 2.1375 36 1 1.9234 -4.2341 1.2466 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261100535.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:56 Heat of formation + Delta-G solvation = 29.596323 kcal Electronic energy + Delta-G solvation = -17732.663537 eV Core-core repulsion = 15181.004451 eV Total energy + Delta-G solvation = -2551.659086 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.68040 -37.80908 -36.21575 -34.65469 -31.86978 -31.13664 -30.09737 -28.11735 -28.06204 -25.96869 -23.31309 -22.19982 -21.49681 -20.11912 -18.41723 -17.19535 -16.83142 -16.46668 -15.67556 -15.58057 -15.35898 -14.80122 -14.17412 -14.08227 -13.90690 -13.56032 -13.45553 -13.25999 -13.21808 -12.97340 -12.87727 -12.56655 -12.39609 -12.36107 -12.03842 -11.79062 -11.62725 -11.43862 -11.04437 -10.74474 -9.90954 -8.53594 -8.43954 -8.05338 -5.86530 0.66390 1.11783 1.36287 1.41356 1.53832 2.20191 2.33476 2.47007 3.20154 3.63928 3.82667 4.13830 4.15866 4.25034 4.45247 4.48441 4.50856 4.69442 4.70365 4.76625 4.85960 4.89590 4.95010 4.98680 5.09683 5.20022 5.30843 5.33365 5.36760 5.47084 5.52372 5.68306 5.90123 6.06151 6.29553 6.49480 6.55139 6.93681 7.04779 7.26926 7.34527 8.64926 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.023849 B = 0.009503 C = 0.007307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.785759 B = 2945.753181 C = 3830.983645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 C -0.116 4.116 3 C 0.014 3.986 4 C -0.488 4.488 5 H 0.066 0.934 6 C 0.037 3.963 7 N -0.842 5.842 8 Si 0.963 3.037 9 H -0.262 1.262 10 H -0.273 1.273 11 H -0.271 1.271 12 C -0.142 4.142 13 C -0.043 4.043 14 C -0.204 4.204 15 C -0.108 4.108 16 C -0.160 4.160 17 C 0.089 3.911 18 N -0.468 5.468 19 C 0.126 3.874 20 C -0.157 4.157 21 C -0.156 4.156 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.275 0.725 26 H 0.093 0.907 27 H 0.123 0.877 28 H 0.145 0.855 29 H 0.131 0.869 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.057 0.943 33 H 0.040 0.960 34 H 0.057 0.943 35 H 0.045 0.955 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.567 -10.078 2.296 10.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.219 4.219 3 C 0.008 3.992 4 C -0.521 4.521 5 H 0.084 0.916 6 C -0.174 4.174 7 N -0.472 5.472 8 Si 0.787 3.213 9 H -0.186 1.186 10 H -0.198 1.198 11 H -0.197 1.197 12 C -0.148 4.148 13 C -0.062 4.062 14 C -0.224 4.224 15 C -0.127 4.127 16 C -0.181 4.181 17 C -0.020 4.020 18 N -0.153 5.153 19 C 0.024 3.976 20 C -0.215 4.215 21 C -0.214 4.214 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.111 0.889 27 H 0.140 0.860 28 H 0.163 0.837 29 H 0.149 0.851 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.597 -10.292 2.183 10.538 hybrid contribution -0.022 1.382 -0.084 1.385 sum -0.619 -8.910 2.099 9.175 Atomic orbital electron populations 1.19832 0.87847 1.01464 1.00722 1.20813 0.93463 0.85274 1.22382 1.18271 0.89234 0.92530 0.99145 1.18693 1.07027 0.91574 1.34792 0.91623 1.26373 0.93482 1.04190 0.93320 1.70046 1.22067 1.36097 1.18972 0.85444 0.78789 0.78159 0.78943 1.18603 1.19850 1.19656 1.19599 0.94549 0.92714 1.07982 1.20638 0.91574 0.98691 0.95257 1.20924 0.97129 0.94712 1.09613 1.20888 0.97025 0.93954 1.00869 1.20167 0.89642 0.98633 1.09619 1.18427 0.85448 0.93651 1.04508 1.43349 1.02518 1.05184 1.64242 1.21416 0.99817 0.79337 0.97021 1.22168 1.02007 1.01261 0.96057 1.22165 1.02033 1.01232 0.95956 0.92730 0.92528 0.91694 0.91547 0.88853 0.85950 0.83724 0.85113 0.88427 0.88117 0.92447 0.94033 0.92370 0.93591 0.88225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.62 9.67 71.24 0.69 -0.93 16 2 C -0.12 -5.62 6.96 42.13 0.29 -5.32 16 3 C 0.01 0.79 5.72 -19.98 -0.11 0.68 16 4 C -0.49 -27.82 8.85 23.28 0.21 -27.61 16 5 H 0.07 3.65 7.91 -2.91 -0.02 3.63 16 6 C 0.04 2.03 4.89 85.18 0.42 2.44 16 7 N -0.84 -47.52 10.31 21.80 0.22 -47.29 16 8 Si 0.96 41.82 29.61 68.60 2.03 43.85 16 9 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 10 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 11 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 12 C -0.14 -7.74 5.78 -20.04 -0.12 -7.86 16 13 C -0.04 -2.22 8.75 22.41 0.20 -2.03 16 14 C -0.20 -8.75 10.03 22.29 0.22 -8.52 16 15 C -0.11 -4.08 10.01 22.28 0.22 -3.85 16 16 C -0.16 -6.26 8.42 22.40 0.19 -6.07 16 17 C 0.09 4.14 6.14 38.87 0.24 4.37 16 18 N -0.47 -20.06 2.62 -476.09 -1.25 -21.31 16 19 C 0.13 3.89 3.38 44.99 0.15 4.04 16 20 C -0.16 -4.23 9.22 71.98 0.66 -3.57 16 21 C -0.16 -4.03 9.21 71.98 0.66 -3.37 16 22 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.06 2.33 7.91 -2.39 -0.02 2.31 16 24 H 0.06 2.13 6.92 -2.38 -0.02 2.12 16 25 H 0.27 14.33 8.31 -92.70 -0.77 13.56 16 26 H 0.09 5.15 6.31 -2.91 -0.02 5.13 16 27 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 28 H 0.15 4.16 8.06 -2.91 -0.02 4.13 16 29 H 0.13 4.20 5.60 -2.91 -0.02 4.18 16 30 H 0.10 2.76 6.43 -2.39 -0.02 2.74 16 31 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.06 1.62 5.95 -2.39 -0.01 1.61 16 33 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.06 1.57 5.95 -2.39 -0.01 1.56 16 35 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -66.62 289.00 6.00 -60.62 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 1.07 Total: 21.72 kcal Atomic # 6 Polarization: -61.51 SS G_CDS: 3.92 Total: -57.59 kcal Atomic # 7 Polarization: -67.58 SS G_CDS: -1.02 Total: -68.60 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -66.62 6.00 -60.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261100535.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.217 kcal (2) G-P(sol) polarization free energy of solvation -66.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds