Wall clock time and date at job start Mon Mar 30 2020 05:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 120.00308 * 2 1 4 4 H 1.48501 * 109.46778 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47219 * 240.00469 * 3 2 1 6 6 H 1.48495 * 109.47341 * 119.99885 * 3 2 1 7 7 C 1.37877 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00430 * 181.30901 * 7 2 1 9 9 C 1.50703 * 119.99582 * 1.31227 * 7 2 1 10 10 H 1.08998 * 109.47280 * 28.26821 * 9 7 2 11 11 C 1.50704 * 109.46697 * 268.26749 * 9 7 2 12 12 C 1.38233 * 120.00212 * 286.66285 * 11 9 7 13 13 C 1.38236 * 119.99748 * 179.77335 * 12 11 9 14 14 C 1.38236 * 120.00072 * 0.49529 * 13 12 11 15 15 C 1.38233 * 119.99909 * 359.75813 * 14 13 12 16 16 C 1.38235 * 119.99411 * 106.93706 * 11 9 7 17 17 N 1.46898 * 109.46902 * 148.27338 * 9 7 2 18 18 C 1.48562 * 111.00048 * 294.99361 * 17 9 7 19 19 C 1.54374 * 104.59501 * 200.96401 * 18 17 9 20 20 H 1.09003 * 117.60737 * 244.71836 * 19 18 17 21 21 C 1.53004 * 118.13189 * 89.19948 * 19 18 17 22 22 C 1.54259 * 105.06342 * 23.85322 * 19 18 17 23 23 H 1.09000 * 121.79139 * 222.12727 * 22 19 18 24 24 C 1.48568 * 110.99685 * 179.57871 * 17 9 7 25 25 H 0.96996 * 120.00317 * 177.69833 * 1 2 3 26 26 H 1.07996 * 119.99948 * 359.97438 * 12 11 9 27 27 H 1.07999 * 119.99569 * 180.23435 * 13 12 11 28 28 H 1.07995 * 120.00083 * 179.72986 * 14 13 12 29 29 H 1.08000 * 120.00111 * 179.97438 * 15 14 13 30 30 H 1.08001 * 120.00339 * 0.02562 * 16 11 9 31 31 H 1.08996 * 110.41119 * 319.74264 * 18 17 9 32 32 H 1.08991 * 110.41083 * 82.18656 * 18 17 9 33 33 H 1.09001 * 117.44059 * 15.97252 * 21 19 18 34 34 H 1.08998 * 117.44749 * 160.68348 * 21 19 18 35 35 H 1.08999 * 110.41362 * 277.81322 * 24 17 9 36 36 H 1.08997 * 110.41104 * 40.25742 * 24 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0843 -1.1942 0.0219 9 6 1.2513 -2.4990 -0.0288 10 1 0.2956 -2.3556 -0.5330 11 6 1.0092 -2.9710 1.3818 12 6 2.0540 -3.4831 2.1282 13 6 1.8329 -3.9117 3.4237 14 6 0.5649 -3.8376 3.9693 15 6 -0.4809 -3.3303 3.2211 16 6 -0.2588 -2.8970 1.9273 17 7 2.0410 -3.5040 -0.7527 18 6 2.1981 -3.1295 -2.1817 19 6 2.5380 -4.4551 -2.8962 20 1 3.5215 -4.5421 -3.3582 21 6 1.3818 -5.3107 -3.4176 22 6 1.9688 -5.5602 -1.9828 23 1 2.5224 -6.4761 -1.7762 24 6 1.3327 -4.8094 -0.7933 25 1 -0.4850 -0.8393 -0.0337 26 1 3.0436 -3.5454 1.7003 27 1 2.6499 -4.3083 4.0081 28 1 0.3913 -4.1765 4.9799 29 1 -1.4716 -3.2729 3.6472 30 1 -1.0760 -2.5014 1.3425 31 1 1.2678 -2.7157 -2.5707 32 1 3.0120 -2.4144 -2.2999 33 1 0.4043 -4.8359 -3.5032 34 1 1.6111 -6.0534 -4.1816 35 1 1.4952 -5.3591 0.1338 36 1 0.2670 -4.6585 -0.9650 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261136001.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:15 Heat of formation + Delta-G solvation = 62.848223 kcal Electronic energy + Delta-G solvation = -17590.904013 eV Core-core repulsion = 15040.686837 eV Total energy + Delta-G solvation = -2550.217176 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.40068 -38.10114 -34.67828 -32.20267 -30.17755 -30.04183 -27.85110 -26.36104 -23.81786 -22.31363 -21.63914 -20.50628 -19.84373 -19.44198 -16.81968 -16.00834 -15.98534 -14.60359 -14.56326 -13.80311 -13.69045 -13.43221 -13.15878 -12.60377 -12.49667 -12.27277 -12.08925 -11.71880 -11.31726 -11.04112 -10.86477 -10.82446 -10.64964 -10.23202 -10.13656 -10.04752 -9.71693 -9.48567 -8.92209 -8.53786 -8.11504 -7.68870 -7.49320 -6.45152 -4.17138 2.21132 2.25382 3.40395 3.42207 3.60345 3.86665 4.43830 4.58087 4.79659 5.03406 5.09468 5.27983 5.41337 5.56198 5.60679 5.65427 5.68643 5.79739 5.91815 6.08277 6.11305 6.21559 6.34058 6.36090 6.40419 6.49775 6.57106 6.65047 6.76520 6.87193 6.95607 7.22786 7.24714 7.56049 7.59547 7.88634 7.93576 8.16527 8.49513 8.75457 9.53140 10.90805 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.014237 B = 0.011718 C = 0.007338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.258241 B = 2389.002907 C = 3814.946942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.023 3.977 3 Si 1.069 2.931 4 H -0.283 1.283 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.574 4.574 8 H 0.060 0.940 9 C 0.219 3.781 10 H 0.017 0.983 11 C -0.029 4.029 12 C -0.099 4.099 13 C -0.133 4.133 14 C -0.151 4.151 15 C -0.126 4.126 16 C -0.126 4.126 17 N -0.497 5.497 18 C 0.082 3.918 19 C -0.160 4.160 20 H 0.107 0.893 21 C -0.162 4.162 22 C -0.167 4.167 23 H 0.110 0.890 24 C 0.060 3.940 25 H 0.269 0.731 26 H 0.120 0.880 27 H 0.108 0.892 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.037 0.963 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.913 -8.687 -0.820 8.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.182 4.182 3 Si 0.897 3.103 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.612 4.612 8 H 0.079 0.921 9 C 0.112 3.888 10 H 0.035 0.965 11 C -0.030 4.030 12 C -0.117 4.117 13 C -0.151 4.151 14 C -0.169 4.169 15 C -0.144 4.144 16 C -0.145 4.145 17 N -0.222 5.222 18 C -0.046 4.046 19 C -0.179 4.179 20 H 0.125 0.875 21 C -0.199 4.199 22 C -0.186 4.186 23 H 0.128 0.872 24 C -0.068 4.068 25 H 0.081 0.919 26 H 0.138 0.862 27 H 0.126 0.874 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.055 0.945 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 2.223 -7.036 -0.495 7.395 hybrid contribution -0.601 -1.523 -0.264 1.658 sum 1.622 -8.558 -0.759 8.744 Atomic orbital electron populations 1.70831 1.06883 1.30737 1.45444 1.25879 0.96444 1.02708 0.93188 0.83534 0.74936 0.75139 0.76721 1.20785 1.21263 1.21281 1.21736 0.94690 0.89639 1.55148 0.92146 1.18687 0.92937 0.90419 0.86718 0.96505 1.20482 0.91800 0.91963 0.98753 1.20922 0.99347 0.98238 0.93200 1.21031 0.96427 1.01729 0.95881 1.20828 0.93567 1.03336 0.99189 1.20930 0.98262 1.00402 0.94803 1.21010 0.97090 1.00756 0.95636 1.65605 1.44759 1.01484 1.10311 1.22314 1.00742 0.93651 0.87845 1.23544 0.98059 0.93835 1.02433 0.87457 1.23656 0.98171 1.02380 0.95686 1.24046 1.04887 0.99773 0.89856 0.87159 1.22563 0.95535 0.92431 0.96297 0.91942 0.86192 0.87420 0.87567 0.87435 0.87201 0.94491 0.89764 0.89298 0.88723 0.90610 0.94895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.15 13.63 55.43 0.76 -25.39 16 2 C 0.02 0.64 5.46 -17.82 -0.10 0.55 16 3 Si 1.07 24.74 29.90 -169.99 -5.08 19.65 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.57 -15.39 7.72 -34.44 -0.27 -15.65 16 8 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 9 C 0.22 5.31 1.29 -70.01 -0.09 5.22 16 10 H 0.02 0.46 6.06 -51.93 -0.31 0.14 16 11 C -0.03 -0.66 3.94 -104.62 -0.41 -1.07 16 12 C -0.10 -2.09 8.82 -39.58 -0.35 -2.44 16 13 C -0.13 -2.45 10.05 -39.58 -0.40 -2.85 16 14 C -0.15 -2.69 10.05 -39.58 -0.40 -3.09 16 15 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 16 C -0.13 -2.76 9.54 -39.58 -0.38 -3.13 16 17 N -0.50 -10.60 4.71 -224.80 -1.06 -11.65 16 18 C 0.08 1.64 5.64 -2.18 -0.01 1.63 16 19 C -0.16 -2.57 6.98 -89.24 -0.62 -3.19 16 20 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 21 C -0.16 -2.28 10.30 -24.55 -0.25 -2.54 16 22 C -0.17 -2.62 7.29 -87.06 -0.63 -3.25 16 23 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16 24 C 0.06 1.11 5.47 -2.18 -0.01 1.10 16 25 H 0.27 7.71 5.82 -40.82 -0.24 7.47 16 26 H 0.12 2.57 7.92 -52.49 -0.42 2.15 16 27 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 28 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 29 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.11 2.45 7.40 -52.49 -0.39 2.06 16 31 H 0.04 0.79 7.89 -51.93 -0.41 0.38 16 32 H 0.08 1.74 8.05 -51.93 -0.42 1.32 16 33 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.08 1.41 7.65 -51.93 -0.40 1.01 16 36 H 0.03 0.64 7.97 -51.93 -0.41 0.23 16 LS Contribution 295.49 15.07 4.45 4.45 Total: -1.00 -28.62 295.49 -10.41 -39.04 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -5.16 Total: 5.42 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: -4.32 Total: -31.52 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: -0.30 Total: -37.05 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.08 Total: 19.65 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.62 -10.41 -39.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261136001.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.885 kcal (2) G-P(sol) polarization free energy of solvation -28.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds