Wall clock time and date at job start Mon Mar 30 2020 05:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 120.00308 * 2 1 4 4 H 1.48501 * 109.46778 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47219 * 240.00469 * 3 2 1 6 6 H 1.48495 * 109.47341 * 119.99885 * 3 2 1 7 7 C 1.37877 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00430 * 181.30901 * 7 2 1 9 9 C 1.50703 * 119.99582 * 1.31227 * 7 2 1 10 10 H 1.08998 * 109.47280 * 28.26821 * 9 7 2 11 11 C 1.50704 * 109.46697 * 268.26749 * 9 7 2 12 12 C 1.38233 * 120.00212 * 286.66285 * 11 9 7 13 13 C 1.38236 * 119.99748 * 179.77335 * 12 11 9 14 14 C 1.38236 * 120.00072 * 0.49529 * 13 12 11 15 15 C 1.38233 * 119.99909 * 359.75813 * 14 13 12 16 16 C 1.38235 * 119.99411 * 106.93706 * 11 9 7 17 17 N 1.46898 * 109.46902 * 148.27338 * 9 7 2 18 18 C 1.48562 * 111.00048 * 294.99361 * 17 9 7 19 19 C 1.54374 * 104.59501 * 200.96401 * 18 17 9 20 20 H 1.09003 * 117.60737 * 244.71836 * 19 18 17 21 21 C 1.53004 * 118.13189 * 89.19948 * 19 18 17 22 22 C 1.54259 * 105.06342 * 23.85322 * 19 18 17 23 23 H 1.09000 * 121.79139 * 222.12727 * 22 19 18 24 24 C 1.48568 * 110.99685 * 179.57871 * 17 9 7 25 25 H 0.96996 * 120.00317 * 177.69833 * 1 2 3 26 26 H 1.07996 * 119.99948 * 359.97438 * 12 11 9 27 27 H 1.07999 * 119.99569 * 180.23435 * 13 12 11 28 28 H 1.07995 * 120.00083 * 179.72986 * 14 13 12 29 29 H 1.08000 * 120.00111 * 179.97438 * 15 14 13 30 30 H 1.08001 * 120.00339 * 0.02562 * 16 11 9 31 31 H 1.08996 * 110.41119 * 319.74264 * 18 17 9 32 32 H 1.08991 * 110.41083 * 82.18656 * 18 17 9 33 33 H 1.09001 * 117.44059 * 15.97252 * 21 19 18 34 34 H 1.08998 * 117.44749 * 160.68348 * 21 19 18 35 35 H 1.08999 * 110.41362 * 277.81322 * 24 17 9 36 36 H 1.08997 * 110.41104 * 40.25742 * 24 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0843 -1.1942 0.0219 9 6 1.2513 -2.4990 -0.0288 10 1 0.2956 -2.3556 -0.5330 11 6 1.0092 -2.9710 1.3818 12 6 2.0540 -3.4831 2.1282 13 6 1.8329 -3.9117 3.4237 14 6 0.5649 -3.8376 3.9693 15 6 -0.4809 -3.3303 3.2211 16 6 -0.2588 -2.8970 1.9273 17 7 2.0410 -3.5040 -0.7527 18 6 2.1981 -3.1295 -2.1817 19 6 2.5380 -4.4551 -2.8962 20 1 3.5215 -4.5421 -3.3582 21 6 1.3818 -5.3107 -3.4176 22 6 1.9688 -5.5602 -1.9828 23 1 2.5224 -6.4761 -1.7762 24 6 1.3327 -4.8094 -0.7933 25 1 -0.4850 -0.8393 -0.0337 26 1 3.0436 -3.5454 1.7003 27 1 2.6499 -4.3083 4.0081 28 1 0.3913 -4.1765 4.9799 29 1 -1.4716 -3.2729 3.6472 30 1 -1.0760 -2.5014 1.3425 31 1 1.2678 -2.7157 -2.5707 32 1 3.0120 -2.4144 -2.2999 33 1 0.4043 -4.8359 -3.5032 34 1 1.6111 -6.0534 -4.1816 35 1 1.4952 -5.3591 0.1338 36 1 0.2670 -4.6585 -0.9650 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261136001.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:15 Heat of formation + Delta-G solvation = 47.221501 kcal Electronic energy + Delta-G solvation = -17591.581639 eV Core-core repulsion = 15040.686837 eV Total energy + Delta-G solvation = -2550.894801 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.95940 -39.61957 -36.40601 -34.07327 -31.77929 -31.61658 -29.42740 -28.14844 -25.67618 -23.87409 -23.20659 -21.97505 -21.51057 -20.84716 -18.80231 -17.54693 -17.45522 -16.23241 -16.14663 -15.68847 -15.34966 -15.07374 -14.76591 -14.14641 -14.00877 -13.88435 -13.70316 -13.36102 -12.91807 -12.84481 -12.62489 -12.32092 -12.20390 -11.98303 -11.76575 -11.69702 -11.04425 -10.89294 -10.79412 -10.60267 -9.69794 -9.36888 -9.27975 -8.61825 -6.35289 0.61680 0.67553 1.49741 1.57307 1.76073 2.51345 2.61108 2.96719 3.20825 3.27476 3.63936 3.73617 4.03333 4.12549 4.17471 4.22348 4.29677 4.33546 4.40829 4.60087 4.65819 4.72172 4.79337 4.82018 4.91806 4.92902 5.05381 5.19174 5.24712 5.29574 5.30305 5.62000 5.69100 5.81723 5.90120 6.00886 6.22473 6.29170 6.44935 6.63387 7.42970 8.72672 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.014237 B = 0.011718 C = 0.007338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.258241 B = 2389.002907 C = 3814.946942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.025 4.025 3 Si 1.111 2.889 4 H -0.285 1.285 5 H -0.269 1.269 6 H -0.274 1.274 7 C -0.578 4.578 8 H 0.048 0.952 9 C 0.227 3.773 10 H -0.023 1.023 11 C -0.053 4.053 12 C -0.114 4.114 13 C -0.125 4.125 14 C -0.139 4.139 15 C -0.125 4.125 16 C -0.151 4.151 17 N -0.502 5.502 18 C 0.077 3.923 19 C -0.163 4.163 20 H 0.133 0.867 21 C -0.139 4.139 22 C -0.165 4.165 23 H 0.140 0.860 24 C 0.060 3.940 25 H 0.257 0.743 26 H 0.111 0.889 27 H 0.145 0.855 28 H 0.151 0.849 29 H 0.136 0.864 30 H 0.088 0.912 31 H 0.008 0.992 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.135 0.865 35 H 0.076 0.924 36 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.192 -10.555 0.207 11.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.224 4.224 3 Si 0.933 3.067 4 H -0.210 1.210 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.616 4.616 8 H 0.067 0.933 9 C 0.119 3.881 10 H -0.005 1.005 11 C -0.054 4.054 12 C -0.132 4.132 13 C -0.142 4.142 14 C -0.157 4.157 15 C -0.143 4.143 16 C -0.170 4.170 17 N -0.226 5.226 18 C -0.050 4.050 19 C -0.182 4.182 20 H 0.150 0.850 21 C -0.176 4.176 22 C -0.184 4.184 23 H 0.157 0.843 24 C -0.068 4.068 25 H 0.068 0.932 26 H 0.129 0.871 27 H 0.163 0.837 28 H 0.168 0.832 29 H 0.153 0.847 30 H 0.106 0.894 31 H 0.027 0.973 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.153 0.847 35 H 0.095 0.905 36 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 3.512 -8.932 0.527 9.612 hybrid contribution -1.026 -1.031 -0.530 1.548 sum 2.486 -9.962 -0.003 10.268 Atomic orbital electron populations 1.70921 1.07756 1.30084 1.48071 1.27164 0.96538 1.06055 0.92665 0.83010 0.74214 0.71628 0.77875 1.21041 1.19386 1.19947 1.21922 0.94126 0.91178 1.54388 0.93331 1.18442 0.90901 0.90656 0.88061 1.00546 1.20354 0.93032 0.94060 0.97925 1.20933 0.98325 0.99293 0.94660 1.21430 0.98063 1.00068 0.94680 1.21318 0.92479 1.01210 1.00703 1.21273 1.00324 0.99247 0.93457 1.21029 0.96337 1.02391 0.97269 1.65548 1.44311 1.01940 1.10804 1.22289 0.98800 0.96021 0.87939 1.23484 1.00146 0.91236 1.03314 0.84969 1.23783 0.96736 1.01771 0.95338 1.24096 1.05077 1.00113 0.89070 0.84258 1.22533 0.94509 0.91528 0.98182 0.93207 0.87092 0.83739 0.83154 0.84659 0.89412 0.97328 0.91237 0.90532 0.84746 0.90512 0.96818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.83 13.63 21.45 0.29 -56.53 16 2 C -0.02 -1.43 5.46 84.66 0.46 -0.96 16 3 Si 1.11 50.97 29.90 68.60 2.05 53.02 16 4 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.58 -32.53 7.72 25.60 0.20 -32.34 16 8 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 9 C 0.23 11.70 1.29 43.43 0.06 11.76 16 10 H -0.02 -1.34 6.06 -2.39 -0.01 -1.36 16 11 C -0.05 -2.50 3.94 -19.87 -0.08 -2.57 16 12 C -0.11 -4.79 8.82 22.27 0.20 -4.60 16 13 C -0.12 -4.26 10.05 22.27 0.22 -4.03 16 14 C -0.14 -4.46 10.05 22.27 0.22 -4.23 16 15 C -0.13 -4.58 10.05 22.27 0.22 -4.35 16 16 C -0.15 -6.86 9.54 22.27 0.21 -6.64 16 17 N -0.50 -22.35 4.71 -865.13 -4.07 -26.42 16 18 C 0.08 3.23 5.64 86.45 0.49 3.72 16 19 C -0.16 -5.04 6.98 -9.90 -0.07 -5.11 16 20 H 0.13 3.46 8.14 -2.39 -0.02 3.45 16 21 C -0.14 -3.62 10.30 32.01 0.33 -3.29 16 22 C -0.17 -4.88 7.29 -8.49 -0.06 -4.94 16 23 H 0.14 3.38 8.14 -2.39 -0.02 3.36 16 24 C 0.06 2.30 5.47 86.45 0.47 2.77 16 25 H 0.26 15.91 5.82 -92.71 -0.54 15.37 16 26 H 0.11 4.79 7.92 -2.91 -0.02 4.76 16 27 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 28 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 29 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 30 H 0.09 4.25 7.40 -2.91 -0.02 4.22 16 31 H 0.01 0.39 7.89 -2.39 -0.02 0.37 16 32 H 0.07 3.03 8.05 -2.39 -0.02 3.01 16 33 H 0.08 2.20 8.14 -2.39 -0.02 2.19 16 34 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.08 2.87 7.65 -2.39 -0.02 2.85 16 36 H 0.01 0.56 7.97 -2.39 -0.02 0.54 16 Total: -1.00 -66.04 295.49 2.42 -63.62 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 1.28 Total: 21.15 kcal Atomic # 6 Polarization: -57.71 SS G_CDS: 2.88 Total: -54.83 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -3.78 Total: -82.96 kcal Atomic # 14 Polarization: 50.97 SS G_CDS: 2.05 Total: 53.02 kcal Total: -66.04 2.42 -63.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261136001.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.841 kcal (2) G-P(sol) polarization free energy of solvation -66.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds