Wall clock time and date at job start Mon Mar 30 2020 05:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 119.99950 * 2 1 4 4 H 1.48504 * 109.47286 * 264.57960 * 3 2 1 5 5 H 1.48506 * 109.47200 * 144.58261 * 3 2 1 6 6 H 1.48498 * 109.47535 * 24.58133 * 3 2 1 7 7 C 1.37875 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99910 * 4.72614 * 7 2 1 9 9 C 1.50695 * 119.99910 * 184.71803 * 7 2 1 10 10 H 1.08995 * 109.47478 * 4.75162 * 9 7 2 11 11 C 1.50704 * 109.47316 * 124.75206 * 9 7 2 12 12 C 1.38241 * 119.99690 * 74.59052 * 11 9 7 13 13 C 1.38240 * 119.99483 * 179.81360 * 12 11 9 14 14 C 1.38233 * 120.00073 * 0.42068 * 13 12 11 15 15 C 1.38234 * 119.99738 * 359.81097 * 14 13 12 16 16 C 1.38231 * 119.99841 * 254.86916 * 11 9 7 17 17 N 1.46911 * 109.47291 * 244.75192 * 9 7 2 18 18 C 1.48555 * 111.00029 * 175.41992 * 17 9 7 19 19 C 1.54383 * 104.59401 * 200.95742 * 18 17 9 20 20 H 1.08996 * 118.15869 * 244.15039 * 19 18 17 21 21 C 1.53004 * 118.12313 * 87.22825 * 19 18 17 22 22 C 1.53006 * 60.54383 * 268.33403 * 21 19 18 23 23 H 1.08998 * 120.22572 * 248.54384 * 22 21 19 24 24 C 1.48556 * 110.99926 * 59.99682 * 17 9 7 25 25 H 0.97000 * 120.00004 * 0.02562 * 1 2 3 26 26 H 1.07994 * 119.99950 * 0.02562 * 12 11 9 27 27 H 1.07995 * 119.99814 * 180.21065 * 13 12 11 28 28 H 1.08004 * 119.99935 * 179.79346 * 14 13 12 29 29 H 1.08005 * 119.99473 * 179.97438 * 15 14 13 30 30 H 1.07997 * 120.00296 * 359.97438 * 16 11 9 31 31 H 1.08999 * 110.41318 * 319.74047 * 18 17 9 32 32 H 1.09006 * 110.41113 * 82.18203 * 18 17 9 33 33 H 1.08997 * 117.43561 * 160.68677 * 21 19 18 34 34 H 1.08998 * 117.44427 * 15.98064 * 21 19 18 35 35 H 1.08999 * 110.41429 * 277.82573 * 24 17 9 36 36 H 1.09004 * 110.40794 * 40.14447 * 24 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6112 1.9803 -1.3938 5 1 3.4848 1.4759 0.8114 6 1 1.3941 2.6830 0.5824 7 6 2.0045 -1.1940 0.0005 8 1 1.4672 -2.1278 -0.0761 9 6 3.5076 -1.1962 0.1079 10 1 3.8625 -0.1770 0.2603 11 6 3.9268 -2.0537 1.2742 12 6 3.8620 -3.4312 1.1778 13 6 4.2501 -4.2178 2.2463 14 6 4.6948 -3.6267 3.4141 15 6 4.7550 -2.2492 3.5120 16 6 4.3706 -1.4626 2.4423 17 7 4.0862 -1.7363 -1.1298 18 6 5.5692 -1.6524 -1.1051 19 6 5.9878 -1.7249 -2.5893 20 1 6.5776 -2.5812 -2.9162 21 6 6.0461 -0.4204 -3.3867 22 6 4.7538 -1.2396 -3.3777 23 1 4.4171 -1.7432 -4.2839 24 6 3.6937 -0.9148 -2.3037 25 1 -0.4850 0.8400 -0.0004 26 1 3.5114 -3.8928 0.2666 27 1 4.2027 -5.2940 2.1698 28 1 4.9948 -4.2412 4.2500 29 1 5.1020 -1.7874 4.4246 30 1 4.4173 -0.3864 2.5190 31 1 5.8893 -0.7077 -0.6655 32 1 5.9883 -2.4921 -0.5505 33 1 6.6335 -0.4189 -4.3049 34 1 6.0532 0.5128 -2.8235 35 1 2.7005 -1.1989 -2.6515 36 1 3.7182 0.1453 -2.0510 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261136006.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:18 Heat of formation + Delta-G solvation = 68.278935 kcal Electronic energy + Delta-G solvation = -17633.566558 eV Core-core repulsion = 15083.584876 eV Total energy + Delta-G solvation = -2549.981682 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.51132 -38.23040 -34.64698 -32.20902 -30.48438 -30.14019 -27.99694 -26.97010 -23.87714 -22.23598 -21.79753 -20.41458 -19.52391 -19.43380 -17.07088 -16.12341 -15.97947 -14.74065 -14.61685 -14.30070 -13.59056 -13.26995 -13.15957 -12.73520 -12.59969 -12.49994 -12.10334 -11.89100 -11.56422 -11.22644 -11.14402 -10.71480 -10.57526 -10.34978 -10.04564 -9.88910 -9.74582 -9.61582 -9.38140 -8.69372 -8.21576 -7.85063 -7.44740 -6.22462 -4.21575 2.10177 2.15135 3.14390 3.20901 3.24676 3.95858 4.24914 4.48554 4.77072 4.99736 5.09986 5.19918 5.42800 5.52739 5.56479 5.60190 5.69465 5.73196 5.92415 6.01243 6.08701 6.20874 6.26838 6.29060 6.34636 6.46730 6.50985 6.63306 6.69285 6.81228 6.87817 7.12993 7.17363 7.33263 7.48836 7.75912 7.86849 8.00322 8.48569 8.89108 9.38761 10.89915 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.015427 B = 0.012085 C = 0.008050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.536095 B = 2316.435354 C = 3477.390687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.079 3.921 3 Si 0.864 3.136 4 H -0.270 1.270 5 H -0.265 1.265 6 H -0.286 1.286 7 C -0.490 4.490 8 H 0.083 0.917 9 C 0.194 3.806 10 H 0.024 0.976 11 C -0.027 4.027 12 C -0.094 4.094 13 C -0.129 4.129 14 C -0.147 4.147 15 C -0.126 4.126 16 C -0.131 4.131 17 N -0.498 5.498 18 C 0.056 3.944 19 C -0.165 4.165 20 H 0.109 0.891 21 C -0.160 4.160 22 C -0.163 4.163 23 H 0.111 0.889 24 C 0.079 3.921 25 H 0.267 0.733 26 H 0.125 0.875 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.031 0.969 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.088 -2.463 -0.939 11.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.125 4.125 3 Si 0.691 3.309 4 H -0.196 1.196 5 H -0.191 1.191 6 H -0.212 1.212 7 C -0.528 4.528 8 H 0.101 0.899 9 C 0.088 3.912 10 H 0.041 0.959 11 C -0.028 4.028 12 C -0.113 4.113 13 C -0.147 4.147 14 C -0.165 4.165 15 C -0.144 4.144 16 C -0.150 4.150 17 N -0.223 5.223 18 C -0.072 4.072 19 C -0.184 4.184 20 H 0.127 0.873 21 C -0.197 4.197 22 C -0.182 4.182 23 H 0.129 0.871 24 C -0.048 4.048 25 H 0.077 0.923 26 H 0.143 0.857 27 H 0.128 0.872 28 H 0.126 0.874 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.049 0.951 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 10.683 -2.896 -0.954 11.110 hybrid contribution 0.578 1.795 0.173 1.894 sum 11.261 -1.101 -0.780 11.342 Atomic orbital electron populations 1.69870 1.06080 1.27150 1.49185 1.25053 0.94725 0.98512 0.94232 0.87137 0.80280 0.84431 0.79011 1.19607 1.19069 1.21181 1.20755 0.87335 0.94979 1.49755 0.89887 1.19113 0.96176 0.91385 0.84520 0.95862 1.20191 0.92592 0.94420 0.95606 1.20999 0.98487 0.93404 0.98372 1.21078 1.00635 0.99077 0.93958 1.20873 1.03178 0.94692 0.97782 1.20916 1.01466 0.93925 0.98069 1.20981 1.00921 0.99275 0.93836 1.65873 1.02523 1.50058 1.03815 1.22626 0.91657 0.99876 0.93086 1.23397 1.02644 0.98055 0.94286 0.87284 1.23051 1.00092 0.95133 1.01450 1.23543 0.89713 1.04517 1.00441 0.87071 1.22355 0.97906 0.95315 0.89251 0.92311 0.85688 0.87174 0.87389 0.87274 0.87302 0.95071 0.90559 0.88667 0.89607 0.89109 0.94810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.10 13.96 55.43 0.77 -25.32 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 3 Si 0.86 20.80 25.73 -169.99 -4.37 16.42 16 4 H -0.27 -6.33 6.83 56.52 0.39 -5.94 16 5 H -0.27 -6.18 6.21 56.52 0.35 -5.83 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.49 -13.24 8.05 -34.44 -0.28 -13.51 16 8 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 9 C 0.19 4.50 1.40 -70.01 -0.10 4.40 16 10 H 0.02 0.57 4.12 -51.93 -0.21 0.36 16 11 C -0.03 -0.58 4.10 -104.62 -0.43 -1.01 16 12 C -0.09 -1.88 9.25 -39.58 -0.37 -2.25 16 13 C -0.13 -2.23 10.05 -39.58 -0.40 -2.63 16 14 C -0.15 -2.41 10.05 -39.58 -0.40 -2.80 16 15 C -0.13 -2.17 10.05 -39.58 -0.40 -2.56 16 16 C -0.13 -2.63 9.67 -39.59 -0.38 -3.01 16 17 N -0.50 -10.42 4.65 -224.80 -1.04 -11.46 16 18 C 0.06 1.00 5.63 -2.18 -0.01 0.99 16 19 C -0.16 -2.56 7.13 -89.23 -0.64 -3.19 16 20 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 21 C -0.16 -2.28 10.07 -26.73 -0.27 -2.55 16 22 C -0.16 -2.67 7.13 -89.24 -0.64 -3.31 16 23 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 24 C 0.08 1.61 5.44 -2.19 -0.01 1.60 16 25 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.13 2.55 7.89 -52.49 -0.41 2.13 16 27 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 28 H 0.11 1.45 8.06 -52.48 -0.42 1.02 16 29 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 30 H 0.11 2.14 8.00 -52.49 -0.42 1.72 16 31 H 0.03 0.58 7.90 -51.93 -0.41 0.17 16 32 H 0.08 1.34 8.03 -51.93 -0.42 0.92 16 33 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.09 1.98 7.98 -51.93 -0.41 1.56 16 36 H 0.03 0.73 5.96 -51.93 -0.31 0.42 16 LS Contribution 290.94 15.07 4.38 4.38 Total: -1.00 -28.53 290.94 -9.85 -38.38 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -5.18 Total: 5.36 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: -4.41 Total: -27.77 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: -0.27 Total: -36.79 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.37 Total: 16.42 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.53 -9.85 -38.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261136006.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.660 kcal (2) G-P(sol) polarization free energy of solvation -28.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds