Wall clock time and date at job start Mon Mar 30 2020 05:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 119.99950 * 2 1 4 4 H 1.48504 * 109.47286 * 264.57960 * 3 2 1 5 5 H 1.48506 * 109.47200 * 144.58261 * 3 2 1 6 6 H 1.48498 * 109.47535 * 24.58133 * 3 2 1 7 7 C 1.37875 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99910 * 4.72614 * 7 2 1 9 9 C 1.50695 * 119.99910 * 184.71803 * 7 2 1 10 10 H 1.08995 * 109.47478 * 4.75162 * 9 7 2 11 11 C 1.50704 * 109.47316 * 124.75206 * 9 7 2 12 12 C 1.38241 * 119.99690 * 74.59052 * 11 9 7 13 13 C 1.38240 * 119.99483 * 179.81360 * 12 11 9 14 14 C 1.38233 * 120.00073 * 0.42068 * 13 12 11 15 15 C 1.38234 * 119.99738 * 359.81097 * 14 13 12 16 16 C 1.38231 * 119.99841 * 254.86916 * 11 9 7 17 17 N 1.46911 * 109.47291 * 244.75192 * 9 7 2 18 18 C 1.48555 * 111.00029 * 175.41992 * 17 9 7 19 19 C 1.54383 * 104.59401 * 200.95742 * 18 17 9 20 20 H 1.08996 * 118.15869 * 244.15039 * 19 18 17 21 21 C 1.53004 * 118.12313 * 87.22825 * 19 18 17 22 22 C 1.53006 * 60.54383 * 268.33403 * 21 19 18 23 23 H 1.08998 * 120.22572 * 248.54384 * 22 21 19 24 24 C 1.48556 * 110.99926 * 59.99682 * 17 9 7 25 25 H 0.97000 * 120.00004 * 0.02562 * 1 2 3 26 26 H 1.07994 * 119.99950 * 0.02562 * 12 11 9 27 27 H 1.07995 * 119.99814 * 180.21065 * 13 12 11 28 28 H 1.08004 * 119.99935 * 179.79346 * 14 13 12 29 29 H 1.08005 * 119.99473 * 179.97438 * 15 14 13 30 30 H 1.07997 * 120.00296 * 359.97438 * 16 11 9 31 31 H 1.08999 * 110.41318 * 319.74047 * 18 17 9 32 32 H 1.09006 * 110.41113 * 82.18203 * 18 17 9 33 33 H 1.08997 * 117.43561 * 160.68677 * 21 19 18 34 34 H 1.08998 * 117.44427 * 15.98064 * 21 19 18 35 35 H 1.08999 * 110.41429 * 277.82573 * 24 17 9 36 36 H 1.09004 * 110.40794 * 40.14447 * 24 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6112 1.9803 -1.3938 5 1 3.4848 1.4759 0.8114 6 1 1.3941 2.6830 0.5824 7 6 2.0045 -1.1940 0.0005 8 1 1.4672 -2.1278 -0.0761 9 6 3.5076 -1.1962 0.1079 10 1 3.8625 -0.1770 0.2603 11 6 3.9268 -2.0537 1.2742 12 6 3.8620 -3.4312 1.1778 13 6 4.2501 -4.2178 2.2463 14 6 4.6948 -3.6267 3.4141 15 6 4.7550 -2.2492 3.5120 16 6 4.3706 -1.4626 2.4423 17 7 4.0862 -1.7363 -1.1298 18 6 5.5692 -1.6524 -1.1051 19 6 5.9878 -1.7249 -2.5893 20 1 6.5776 -2.5812 -2.9162 21 6 6.0461 -0.4204 -3.3867 22 6 4.7538 -1.2396 -3.3777 23 1 4.4171 -1.7432 -4.2839 24 6 3.6937 -0.9148 -2.3037 25 1 -0.4850 0.8400 -0.0004 26 1 3.5114 -3.8928 0.2666 27 1 4.2027 -5.2940 2.1698 28 1 4.9948 -4.2412 4.2500 29 1 5.1020 -1.7874 4.4246 30 1 4.4173 -0.3864 2.5190 31 1 5.8893 -0.7077 -0.6655 32 1 5.9883 -2.4921 -0.5505 33 1 6.6335 -0.4189 -4.3049 34 1 6.0532 0.5128 -2.8235 35 1 2.7005 -1.1989 -2.6515 36 1 3.7182 0.1453 -2.0510 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261136006.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:17 Heat of formation + Delta-G solvation = 51.461414 kcal Electronic energy + Delta-G solvation = -17634.295821 eV Core-core repulsion = 15083.584876 eV Total energy + Delta-G solvation = -2550.710945 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.99894 -39.64868 -36.28179 -34.21754 -31.97837 -31.58349 -29.61355 -28.66152 -25.60302 -23.73281 -23.23397 -21.77041 -21.13198 -20.87038 -19.13557 -17.57834 -17.37032 -16.53566 -16.08825 -15.94021 -15.11830 -14.91741 -14.79331 -14.50230 -14.04537 -13.90229 -13.67309 -13.47037 -13.15069 -12.95827 -12.68983 -12.22931 -12.04611 -12.00000 -11.79790 -11.65055 -11.38273 -11.02622 -10.82946 -10.78179 -9.66162 -9.37277 -9.12971 -8.38261 -6.40748 0.64135 0.69617 1.20565 1.20964 1.29270 2.20339 2.71277 2.84479 3.15143 3.36220 3.66973 3.79462 4.08858 4.16662 4.22814 4.27423 4.34959 4.37259 4.43565 4.59662 4.67868 4.75001 4.82095 4.85710 4.91776 4.98883 5.11473 5.17989 5.27837 5.33082 5.34200 5.43242 5.71210 5.75127 5.95293 6.07289 6.15580 6.32096 6.55824 6.66740 7.23301 8.78525 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.015427 B = 0.012085 C = 0.008050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.536095 B = 2316.435354 C = 3477.390687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.028 3.972 3 Si 0.920 3.080 4 H -0.260 1.260 5 H -0.253 1.253 6 H -0.282 1.282 7 C -0.486 4.486 8 H 0.035 0.965 9 C 0.203 3.797 10 H 0.012 0.988 11 C -0.058 4.058 12 C -0.112 4.112 13 C -0.126 4.126 14 C -0.136 4.136 15 C -0.121 4.121 16 C -0.151 4.151 17 N -0.507 5.507 18 C 0.056 3.944 19 C -0.159 4.159 20 H 0.136 0.864 21 C -0.136 4.136 22 C -0.176 4.176 23 H 0.129 0.871 24 C 0.075 3.925 25 H 0.268 0.732 26 H 0.108 0.892 27 H 0.140 0.860 28 H 0.150 0.850 29 H 0.143 0.857 30 H 0.104 0.896 31 H 0.024 0.976 32 H 0.080 0.920 33 H 0.133 0.867 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.309 -2.902 -0.382 14.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.171 4.171 3 Si 0.745 3.255 4 H -0.185 1.185 5 H -0.178 1.178 6 H -0.208 1.208 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.096 3.904 10 H 0.030 0.970 11 C -0.058 4.058 12 C -0.130 4.130 13 C -0.144 4.144 14 C -0.154 4.154 15 C -0.139 4.139 16 C -0.170 4.170 17 N -0.232 5.232 18 C -0.072 4.072 19 C -0.177 4.177 20 H 0.154 0.846 21 C -0.173 4.173 22 C -0.194 4.194 23 H 0.147 0.853 24 C -0.053 4.053 25 H 0.077 0.923 26 H 0.126 0.874 27 H 0.158 0.842 28 H 0.168 0.832 29 H 0.161 0.839 30 H 0.123 0.877 31 H 0.042 0.958 32 H 0.099 0.901 33 H 0.151 0.849 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 13.929 -3.347 -0.401 14.331 hybrid contribution -0.407 1.774 0.063 1.821 sum 13.522 -1.572 -0.338 13.618 Atomic orbital electron populations 1.70008 1.07801 1.28043 1.51734 1.25747 0.95335 1.01921 0.94129 0.86216 0.79414 0.80184 0.79675 1.18546 1.17755 1.20839 1.20819 0.89711 0.93043 1.48920 0.94622 1.18877 0.93533 0.91550 0.86429 0.97026 1.20126 0.95100 0.95005 0.95611 1.20965 0.99772 0.93178 0.99111 1.21418 0.99218 1.00462 0.93282 1.21361 1.00986 0.94744 0.98308 1.21306 0.99989 0.94406 0.98188 1.21120 1.01975 0.99565 0.94344 1.65708 1.04736 1.49800 1.02939 1.22623 0.89390 0.99675 0.95468 1.23464 1.02176 1.00095 0.92013 0.84577 1.23181 0.97908 0.93978 1.02270 1.23467 0.89157 1.06724 1.00097 0.85318 1.22289 0.98232 0.94098 0.90672 0.92269 0.87432 0.84182 0.83227 0.83922 0.87750 0.95751 0.90135 0.84929 0.90311 0.92096 0.96523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.15 13.96 21.45 0.30 -57.85 16 2 C 0.03 1.62 5.47 84.65 0.46 2.08 16 3 Si 0.92 44.30 25.73 68.60 1.77 46.06 16 4 H -0.26 -12.00 6.83 99.48 0.68 -11.32 16 5 H -0.25 -11.55 6.21 99.48 0.62 -10.94 16 6 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 7 C -0.49 -27.93 8.05 25.60 0.21 -27.73 16 8 H 0.04 2.32 8.06 -2.91 -0.02 2.30 16 9 C 0.20 9.76 1.40 43.42 0.06 9.82 16 10 H 0.01 0.60 4.12 -2.39 -0.01 0.59 16 11 C -0.06 -2.52 4.10 -19.86 -0.08 -2.60 16 12 C -0.11 -4.49 9.25 22.27 0.21 -4.29 16 13 C -0.13 -4.05 10.05 22.27 0.22 -3.83 16 14 C -0.14 -3.92 10.05 22.27 0.22 -3.69 16 15 C -0.12 -3.81 10.05 22.27 0.22 -3.59 16 16 C -0.15 -5.95 9.67 22.27 0.22 -5.73 16 17 N -0.51 -21.82 4.65 -865.13 -4.02 -25.84 16 18 C 0.06 1.98 5.63 86.45 0.49 2.47 16 19 C -0.16 -4.51 7.13 -9.90 -0.07 -4.58 16 20 H 0.14 3.18 8.14 -2.39 -0.02 3.16 16 21 C -0.14 -3.44 10.07 30.60 0.31 -3.13 16 22 C -0.18 -5.49 7.13 -9.90 -0.07 -5.56 16 23 H 0.13 3.56 8.14 -2.39 -0.02 3.54 16 24 C 0.07 3.13 5.44 86.45 0.47 3.60 16 25 H 0.27 15.59 8.31 -92.71 -0.77 14.81 16 26 H 0.11 4.58 7.89 -2.91 -0.02 4.56 16 27 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 28 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 29 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 30 H 0.10 4.08 8.00 -2.91 -0.02 4.06 16 31 H 0.02 0.89 7.90 -2.39 -0.02 0.87 16 32 H 0.08 2.75 8.03 -2.38 -0.02 2.73 16 33 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.06 2.83 7.98 -2.39 -0.02 2.82 16 36 H 0.02 0.74 5.96 -2.39 -0.01 0.72 16 Total: -1.00 -66.25 290.94 1.84 -64.40 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.94 Total: 19.97 kcal Atomic # 6 Polarization: -49.61 SS G_CDS: 2.86 Total: -46.75 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -3.72 Total: -83.69 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.77 Total: 46.06 kcal Total: -66.25 1.84 -64.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261136006.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.865 kcal (2) G-P(sol) polarization free energy of solvation -66.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds