Wall clock time and date at job start Mon Mar 30 2020 05:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99891 * 2 1 4 4 H 1.48505 * 109.47063 * 270.00057 * 3 2 1 5 5 H 1.48488 * 109.47408 * 30.00432 * 3 2 1 6 6 H 1.48501 * 109.46753 * 150.00749 * 3 2 1 7 7 C 1.37875 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00235 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99985 * 359.97438 * 7 2 1 10 10 H 1.09001 * 110.26815 * 299.37878 * 9 7 2 11 11 C 1.54348 * 110.30208 * 61.45217 * 9 7 2 12 12 C 1.54347 * 102.37134 * 145.24533 * 11 9 7 13 13 C 1.51392 * 105.16674 * 333.67501 * 12 11 9 14 14 C 1.38575 * 130.34294 * 197.18614 * 13 12 11 15 15 C 1.38145 * 120.36879 * 180.02562 * 14 13 12 16 16 C 1.38119 * 120.02132 * 359.95474 * 15 14 13 17 17 C 1.38784 * 119.85015 * 0.02562 * 16 15 14 18 18 N 1.39669 * 119.96807 * 180.02562 * 17 16 15 19 19 C 1.46496 * 120.00310 * 359.97117 * 18 17 16 20 20 C 1.53003 * 117.50278 * 223.62522 * 19 18 17 21 21 C 1.53002 * 60.00018 * 252.51334 * 20 19 18 22 22 C 1.38073 * 109.76031 * 17.18069 * 13 12 11 23 23 H 0.97001 * 119.99752 * 359.97438 * 1 2 3 24 24 H 1.09004 * 110.82843 * 27.02653 * 11 9 7 25 25 H 1.09001 * 110.99893 * 263.53795 * 11 9 7 26 26 H 1.08997 * 110.30742 * 92.59640 * 12 11 9 27 27 H 1.09003 * 110.30761 * 214.75311 * 12 11 9 28 28 H 1.07997 * 119.81513 * 359.97438 * 14 13 12 29 29 H 1.08002 * 119.98825 * 179.97438 * 15 14 13 30 30 H 1.08001 * 120.07539 * 179.97438 * 16 15 14 31 31 H 0.97007 * 120.00079 * 179.97438 * 18 17 16 32 32 H 1.08998 * 115.55015 * 9.33821 * 19 18 17 33 33 H 1.08998 * 117.49312 * 359.97438 * 20 19 18 34 34 H 1.08999 * 117.50110 * 145.02030 * 20 19 18 35 35 H 1.09007 * 117.49105 * 252.50858 * 21 20 19 36 36 H 1.09000 * 117.52379 * 107.48351 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6281 -2.5756 0.8907 11 6 0.3836 -2.6168 -1.2718 12 6 0.4486 -4.1282 -1.5778 13 6 1.7559 -4.5983 -0.9761 14 6 2.4841 -5.7550 -1.2048 15 6 3.6692 -5.9788 -0.5311 16 6 4.1353 -5.0469 0.3756 17 6 3.4102 -3.8866 0.6082 18 7 3.8795 -2.9424 1.5241 19 6 5.1362 -3.1773 2.2394 20 6 5.1663 -2.8636 3.7366 21 6 5.8984 -1.9525 2.7493 22 6 2.2162 -3.6630 -0.0708 23 1 -0.4850 0.8401 0.0004 24 1 0.8131 -2.0372 -2.0890 25 1 -0.6422 -2.3051 -1.0750 26 1 -0.3900 -4.6451 -1.1112 27 1 0.4457 -4.2967 -2.6547 28 1 2.1227 -6.4859 -1.9129 29 1 4.2316 -6.8825 -0.7137 30 1 5.0614 -5.2212 0.9031 31 1 3.3732 -2.1311 1.6867 32 1 5.7238 -4.0266 1.8908 33 1 4.2511 -2.4821 4.1893 34 1 5.7736 -3.5068 4.3735 35 1 6.9875 -1.9963 2.7366 36 1 5.4650 -0.9720 2.5522 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261149754.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:34 Heat of formation + Delta-G solvation = 32.457050 kcal Electronic energy + Delta-G solvation = -17395.616182 eV Core-core repulsion = 14844.081146 eV Total energy + Delta-G solvation = -2551.535036 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.94257 -38.59311 -36.60430 -34.80899 -33.83824 -30.13219 -29.50064 -28.55138 -25.49800 -23.53871 -23.22652 -22.69151 -21.21676 -20.61949 -18.63920 -17.80236 -16.93859 -16.72305 -16.12577 -15.57211 -15.37904 -15.30910 -14.33199 -14.03854 -13.95556 -13.67056 -13.52274 -13.04938 -12.96309 -12.61528 -12.51247 -12.39321 -12.29272 -12.09193 -11.67174 -11.53852 -11.33611 -11.11396 -10.95564 -10.51963 -10.33168 -9.16505 -8.16459 -7.90993 -6.22475 0.75123 0.93659 1.36201 1.38387 1.46710 2.39822 2.64997 2.96210 3.17741 3.27601 3.88722 3.95976 4.03232 4.15231 4.17628 4.41658 4.50392 4.56113 4.67065 4.75502 4.77183 4.91369 4.97023 5.03376 5.16711 5.23359 5.24576 5.34435 5.48994 5.56544 5.64830 5.80651 5.85984 5.88163 6.08011 6.29264 6.35363 6.81127 6.86213 6.97854 7.44387 8.94979 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.015040 B = 0.011513 C = 0.006966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.295222 B = 2431.485771 C = 4018.455220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.018 3.982 3 Si 0.946 3.054 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.519 4.519 8 H 0.057 0.943 9 C 0.087 3.913 10 H -0.004 1.004 11 C -0.084 4.084 12 C -0.079 4.079 13 C -0.079 4.079 14 C -0.178 4.178 15 C -0.083 4.083 16 C -0.214 4.214 17 C 0.214 3.786 18 N -0.724 5.724 19 C 0.075 3.925 20 C -0.193 4.193 21 C -0.196 4.196 22 C -0.168 4.168 23 H 0.260 0.740 24 H 0.034 0.966 25 H 0.046 0.954 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.133 0.867 29 H 0.152 0.848 30 H 0.140 0.860 31 H 0.402 0.598 32 H 0.144 0.856 33 H 0.078 0.922 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.313 -9.143 2.227 13.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.181 4.181 3 Si 0.772 3.228 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.557 4.557 8 H 0.075 0.925 9 C 0.069 3.931 10 H 0.014 0.986 11 C -0.122 4.122 12 C -0.115 4.115 13 C -0.080 4.080 14 C -0.197 4.197 15 C -0.101 4.101 16 C -0.236 4.236 17 C 0.111 3.889 18 N -0.353 5.353 19 C -0.032 4.032 20 C -0.232 4.232 21 C -0.234 4.234 22 C -0.172 4.172 23 H 0.069 0.931 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.150 0.850 29 H 0.169 0.831 30 H 0.158 0.842 31 H 0.240 0.760 32 H 0.161 0.839 33 H 0.097 0.903 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.311 -9.065 2.306 13.198 hybrid contribution -0.334 1.831 0.132 1.866 sum 8.977 -7.234 2.437 11.784 Atomic orbital electron populations 1.70084 1.07095 1.27120 1.51080 1.25678 0.95543 1.01935 0.94961 0.85736 0.78888 0.80052 0.78082 1.20577 1.21002 1.19222 1.21363 0.92849 0.91073 1.50413 0.92522 1.18028 0.91174 0.90633 0.93294 0.98575 1.21961 0.99096 0.93200 0.97931 1.21128 0.94125 0.95962 1.00328 1.20706 0.96442 0.94385 0.96438 1.20589 0.97136 0.97539 1.04484 1.21004 0.95394 0.98898 0.94804 1.20787 1.02490 0.94794 1.05576 1.17719 0.91619 0.89944 0.89584 1.44601 1.24065 1.22678 1.43954 1.21770 0.88204 1.00294 0.92943 1.23482 1.02543 1.03943 0.93220 1.23404 1.00497 0.95076 1.04456 1.20705 0.96642 0.99018 1.00818 0.93074 0.94675 0.93485 0.90472 0.90296 0.84955 0.83063 0.84206 0.76020 0.83859 0.90306 0.85750 0.85787 0.90698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.02 12.31 21.45 0.26 -52.76 16 2 C 0.02 1.01 5.33 84.65 0.45 1.46 16 3 Si 0.95 43.86 29.54 68.60 2.03 45.89 16 4 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 7 C -0.52 -28.47 6.94 25.60 0.18 -28.29 16 8 H 0.06 3.10 6.45 -2.91 -0.02 3.08 16 9 C 0.09 4.55 2.69 -11.62 -0.03 4.52 16 10 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 11 C -0.08 -4.11 5.63 31.51 0.18 -3.93 16 12 C -0.08 -3.10 6.77 30.53 0.21 -2.90 16 13 C -0.08 -3.20 6.14 -19.60 -0.12 -3.32 16 14 C -0.18 -5.88 10.04 22.33 0.22 -5.66 16 15 C -0.08 -2.45 10.04 22.22 0.22 -2.23 16 16 C -0.21 -7.02 9.32 22.37 0.21 -6.81 16 17 C 0.21 8.68 6.51 38.25 0.25 8.93 16 18 N -0.72 -27.99 5.23 -318.85 -1.67 -29.66 16 19 C 0.07 2.15 6.32 44.99 0.28 2.43 16 20 C -0.19 -4.77 10.46 30.60 0.32 -4.45 16 21 C -0.20 -5.04 10.46 30.60 0.32 -4.72 16 22 C -0.17 -7.67 5.57 -19.47 -0.11 -7.78 16 23 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 24 H 0.03 1.81 7.91 -2.39 -0.02 1.80 16 25 H 0.05 2.42 7.88 -2.39 -0.02 2.40 16 26 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 27 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 28 H 0.13 3.57 8.06 -2.91 -0.02 3.55 16 29 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 30 H 0.14 3.68 5.88 -2.91 -0.02 3.66 16 31 H 0.40 17.71 6.36 -92.70 -0.59 17.12 16 32 H 0.14 3.44 5.89 -2.39 -0.01 3.42 16 33 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.12 2.45 8.14 -2.38 -0.02 2.44 16 36 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -62.36 292.37 3.69 -58.66 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: 0.49 Total: 30.61 kcal Atomic # 6 Polarization: -55.32 SS G_CDS: 2.58 Total: -52.74 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -1.40 Total: -82.42 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -62.36 3.69 -58.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261149754.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.119 kcal (2) G-P(sol) polarization free energy of solvation -62.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds