Wall clock time and date at job start Mon Mar 30 2020 05:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00298 * 2 1 4 4 H 1.48505 * 109.47003 * 270.00273 * 3 2 1 5 5 H 1.48500 * 109.46800 * 30.00004 * 3 2 1 6 6 H 1.48497 * 109.47442 * 150.00077 * 3 2 1 7 7 C 1.37872 * 119.99625 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00591 * 359.97438 * 7 2 1 9 9 C 1.50709 * 119.99685 * 179.97438 * 7 2 1 10 10 H 1.08995 * 110.34902 * 57.86795 * 9 7 2 11 11 C 1.54348 * 110.30561 * 295.72932 * 9 7 2 12 12 C 1.54347 * 102.37481 * 214.75748 * 11 9 7 13 13 C 1.51380 * 105.16745 * 26.32554 * 12 11 9 14 14 C 1.38566 * 130.34772 * 163.10621 * 13 12 11 15 15 C 1.38147 * 120.37819 * 180.18805 * 14 13 12 16 16 C 1.38127 * 120.01887 * 359.51165 * 15 14 13 17 17 C 1.38786 * 119.84507 * 0.24312 * 16 15 14 18 18 N 1.39670 * 119.97109 * 180.02562 * 17 16 15 19 19 C 1.46504 * 119.99716 * 359.97438 * 18 17 16 20 20 C 1.53002 * 117.49618 * 223.62612 * 19 18 17 21 21 C 1.52997 * 117.49718 * 155.00317 * 19 18 17 22 22 C 1.38085 * 109.76404 * 342.82410 * 13 12 11 23 23 H 0.97008 * 119.99685 * 359.97438 * 1 2 3 24 24 H 1.09006 * 110.82555 * 332.98133 * 11 9 7 25 25 H 1.09000 * 110.82605 * 96.33421 * 11 9 7 26 26 H 1.08995 * 110.29938 * 267.40403 * 12 11 9 27 27 H 1.08995 * 110.30339 * 145.24767 * 12 11 9 28 28 H 1.08000 * 119.81203 * 359.68993 * 14 13 12 29 29 H 1.08001 * 119.99550 * 179.78239 * 15 14 13 30 30 H 1.07990 * 120.07665 * 180.27072 * 16 15 14 31 31 H 0.96994 * 120.00205 * 179.97438 * 18 17 16 32 32 H 1.09004 * 115.54995 * 9.33458 * 19 18 17 33 33 H 1.08996 * 117.49975 * 359.97438 * 20 19 18 34 34 H 1.09003 * 117.49644 * 145.02440 * 20 19 18 35 35 H 1.09000 * 117.49977 * 214.97865 * 21 19 18 36 36 H 1.09003 * 117.49824 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 1 3.8909 -0.6507 0.8643 11 6 4.0467 -0.5654 -1.3052 12 6 5.3230 -1.3915 -1.5713 13 6 5.0767 -2.7272 -0.9028 14 6 5.7175 -3.9447 -1.0678 15 6 5.3155 -5.0497 -0.3428 16 6 4.2757 -4.9428 0.5603 17 6 3.6336 -3.7246 0.7332 18 7 2.5823 -3.6134 1.6460 19 6 2.1576 -4.7826 2.4200 20 6 0.6540 -5.0284 2.5605 21 6 1.4628 -4.5287 3.7593 22 6 4.0367 -2.6136 -0.0016 23 1 -0.4850 0.8401 0.0004 24 1 3.3296 -0.6876 -2.1171 25 1 4.2866 0.4876 -1.1578 26 1 6.1899 -0.9012 -1.1286 27 1 5.4698 -1.5262 -2.6429 28 1 6.5308 -4.0322 -1.7731 29 1 5.8170 -5.9965 -0.4788 30 1 3.9635 -5.8050 1.1307 31 1 2.1335 -2.7622 1.7675 32 1 2.8060 -5.6557 2.3469 33 1 -0.0191 -4.3201 2.0775 34 1 0.3129 -6.0636 2.5798 35 1 1.6539 -5.2350 4.5672 36 1 1.3214 -3.4918 4.0643 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261149755.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:37 Heat of formation + Delta-G solvation = 51.690818 kcal Electronic energy + Delta-G solvation = -17432.401376 eV Core-core repulsion = 14881.700379 eV Total energy + Delta-G solvation = -2550.700997 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.56431 -37.33255 -35.16376 -33.27714 -32.12358 -28.88728 -28.17396 -27.13193 -23.34452 -22.24078 -22.07457 -21.44714 -19.53713 -19.29710 -17.00674 -16.50663 -15.67671 -14.97508 -14.55023 -14.19541 -14.05852 -13.64676 -13.01225 -12.62573 -12.50014 -12.29253 -12.25059 -11.68793 -11.29587 -11.21562 -11.10045 -10.74121 -10.65625 -10.34790 -10.15758 -10.04596 -9.91897 -9.61078 -9.17235 -9.03076 -8.60430 -7.72904 -6.52327 -6.13248 -4.13026 2.13204 2.31373 3.25508 3.34941 3.36071 4.00055 4.18087 4.37465 4.61179 5.08716 5.13886 5.26902 5.31015 5.32742 5.50671 5.66368 5.75865 5.87566 5.93767 5.96873 6.01043 6.16381 6.24934 6.31921 6.42391 6.48054 6.62814 6.71594 6.84624 6.98064 7.08648 7.16414 7.31708 7.47660 7.63873 7.71729 8.14849 8.49021 8.57603 8.91114 9.49355 10.98628 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.016567 B = 0.011119 C = 0.007067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.721410 B = 2517.610829 C = 3961.017975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.075 3.925 3 Si 0.876 3.124 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.264 1.264 7 C -0.515 4.515 8 H 0.081 0.919 9 C 0.052 3.948 10 H 0.039 0.961 11 C -0.126 4.126 12 C -0.079 4.079 13 C -0.066 4.066 14 C -0.175 4.175 15 C -0.091 4.091 16 C -0.214 4.214 17 C 0.238 3.762 18 N -0.709 5.709 19 C 0.093 3.907 20 C -0.203 4.203 21 C -0.199 4.199 22 C -0.119 4.119 23 H 0.264 0.736 24 H 0.074 0.926 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.105 0.895 29 H 0.110 0.890 30 H 0.113 0.887 31 H 0.420 0.580 32 H 0.122 0.878 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.492 -7.447 2.618 10.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.128 4.128 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.189 1.189 7 C -0.552 4.552 8 H 0.099 0.901 9 C 0.033 3.967 10 H 0.057 0.943 11 C -0.164 4.164 12 C -0.116 4.116 13 C -0.067 4.067 14 C -0.195 4.195 15 C -0.109 4.109 16 C -0.237 4.237 17 C 0.134 3.866 18 N -0.339 5.339 19 C -0.015 4.015 20 C -0.242 4.242 21 C -0.238 4.238 22 C -0.123 4.123 23 H 0.074 0.926 24 H 0.092 0.908 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.123 0.877 29 H 0.129 0.871 30 H 0.131 0.869 31 H 0.262 0.738 32 H 0.140 0.860 33 H 0.119 0.881 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.280 -7.455 2.703 10.765 hybrid contribution 0.058 1.179 -0.008 1.181 sum 7.338 -6.275 2.695 10.024 Atomic orbital electron populations 1.69905 1.06235 1.26986 1.50317 1.24991 0.94612 0.98918 0.94231 0.86948 0.80195 0.83794 0.78606 1.20173 1.22049 1.18900 1.21033 0.88361 0.94579 1.51268 0.90062 1.18699 0.96700 0.87878 0.93422 0.94322 1.22720 0.95512 0.97298 1.00881 1.21044 0.98915 0.92517 0.99114 1.20404 0.95251 0.94361 0.96701 1.20209 1.02900 0.92448 1.03917 1.20515 0.96721 0.97436 0.96255 1.20435 1.01756 0.96158 1.05318 1.17395 0.87510 0.92529 0.89140 1.44523 1.36003 1.11675 1.41727 1.21428 0.93650 0.91929 0.94535 1.23456 0.96143 1.02161 1.02424 1.23344 1.05682 1.02624 0.92138 1.20356 0.97862 0.95959 0.98146 0.92630 0.90763 0.93005 0.91452 0.91883 0.87728 0.87146 0.86880 0.73805 0.86025 0.88143 0.88889 0.88735 0.88611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.36 13.96 55.43 0.77 -25.59 16 2 C 0.07 2.06 5.46 -17.82 -0.10 1.97 16 3 Si 0.88 21.07 24.77 -169.99 -4.21 16.86 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.26 -6.11 6.41 56.52 0.36 -5.75 16 7 C -0.51 -13.75 7.40 -34.44 -0.25 -14.00 16 8 H 0.08 2.36 6.85 -52.49 -0.36 2.00 16 9 C 0.05 1.21 2.20 -91.89 -0.20 1.01 16 10 H 0.04 0.94 7.09 -51.93 -0.37 0.57 16 11 C -0.13 -2.70 5.09 -25.32 -0.13 -2.83 16 12 C -0.08 -1.44 6.77 -26.84 -0.18 -1.62 16 13 C -0.07 -1.30 6.14 -104.22 -0.64 -1.94 16 14 C -0.17 -3.03 10.03 -39.49 -0.40 -3.42 16 15 C -0.09 -1.48 10.04 -39.66 -0.40 -1.88 16 16 C -0.21 -3.76 9.32 -39.42 -0.37 -4.13 16 17 C 0.24 4.81 6.51 -83.74 -0.54 4.27 16 18 N -0.71 -13.81 5.25 -52.13 -0.27 -14.08 16 19 C 0.09 1.45 6.32 -67.93 -0.43 1.02 16 20 C -0.20 -2.98 10.46 -26.73 -0.28 -3.26 16 21 C -0.20 -2.76 10.45 -26.73 -0.28 -3.04 16 22 C -0.12 -2.59 5.57 -104.01 -0.58 -3.17 16 23 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 24 H 0.07 1.67 7.91 -51.93 -0.41 1.26 16 25 H 0.05 1.07 5.87 -51.93 -0.30 0.77 16 26 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 30 H 0.11 1.71 5.88 -52.49 -0.31 1.40 16 31 H 0.42 9.14 6.41 -40.82 -0.26 8.88 16 32 H 0.12 1.67 5.89 -51.93 -0.31 1.37 16 33 H 0.10 1.71 8.14 -51.93 -0.42 1.28 16 34 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 285.54 15.07 4.30 4.30 Total: -1.00 -28.68 285.54 -9.06 -37.74 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -4.88 Total: 11.79 kcal Atomic # 6 Polarization: -26.25 SS G_CDS: -4.78 Total: -31.03 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.50 Total: -39.67 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.21 Total: 16.86 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.68 -9.06 -37.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261149755.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.432 kcal (2) G-P(sol) polarization free energy of solvation -28.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds