Wall clock time and date at job start Mon Mar 30 2020 05:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00298 * 2 1 4 4 H 1.48505 * 109.47003 * 270.00273 * 3 2 1 5 5 H 1.48500 * 109.46800 * 30.00004 * 3 2 1 6 6 H 1.48497 * 109.47442 * 150.00077 * 3 2 1 7 7 C 1.37872 * 119.99625 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00591 * 359.97438 * 7 2 1 9 9 C 1.50709 * 119.99685 * 179.97438 * 7 2 1 10 10 H 1.08995 * 110.34902 * 57.86795 * 9 7 2 11 11 C 1.54348 * 110.30561 * 295.72932 * 9 7 2 12 12 C 1.54347 * 102.37481 * 214.75748 * 11 9 7 13 13 C 1.51380 * 105.16745 * 26.32554 * 12 11 9 14 14 C 1.38566 * 130.34772 * 163.10621 * 13 12 11 15 15 C 1.38147 * 120.37819 * 180.18805 * 14 13 12 16 16 C 1.38127 * 120.01887 * 359.51165 * 15 14 13 17 17 C 1.38786 * 119.84507 * 0.24312 * 16 15 14 18 18 N 1.39670 * 119.97109 * 180.02562 * 17 16 15 19 19 C 1.46504 * 119.99716 * 359.97438 * 18 17 16 20 20 C 1.53002 * 117.49618 * 223.62612 * 19 18 17 21 21 C 1.52997 * 117.49718 * 155.00317 * 19 18 17 22 22 C 1.38085 * 109.76404 * 342.82410 * 13 12 11 23 23 H 0.97008 * 119.99685 * 359.97438 * 1 2 3 24 24 H 1.09006 * 110.82555 * 332.98133 * 11 9 7 25 25 H 1.09000 * 110.82605 * 96.33421 * 11 9 7 26 26 H 1.08995 * 110.29938 * 267.40403 * 12 11 9 27 27 H 1.08995 * 110.30339 * 145.24767 * 12 11 9 28 28 H 1.08000 * 119.81203 * 359.68993 * 14 13 12 29 29 H 1.08001 * 119.99550 * 179.78239 * 15 14 13 30 30 H 1.07990 * 120.07665 * 180.27072 * 16 15 14 31 31 H 0.96994 * 120.00205 * 179.97438 * 18 17 16 32 32 H 1.09004 * 115.54995 * 9.33458 * 19 18 17 33 33 H 1.08996 * 117.49975 * 359.97438 * 20 19 18 34 34 H 1.09003 * 117.49644 * 145.02440 * 20 19 18 35 35 H 1.09000 * 117.49977 * 214.97865 * 21 19 18 36 36 H 1.09003 * 117.49824 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 1 3.8909 -0.6507 0.8643 11 6 4.0467 -0.5654 -1.3052 12 6 5.3230 -1.3915 -1.5713 13 6 5.0767 -2.7272 -0.9028 14 6 5.7175 -3.9447 -1.0678 15 6 5.3155 -5.0497 -0.3428 16 6 4.2757 -4.9428 0.5603 17 6 3.6336 -3.7246 0.7332 18 7 2.5823 -3.6134 1.6460 19 6 2.1576 -4.7826 2.4200 20 6 0.6540 -5.0284 2.5605 21 6 1.4628 -4.5287 3.7593 22 6 4.0367 -2.6136 -0.0016 23 1 -0.4850 0.8401 0.0004 24 1 3.3296 -0.6876 -2.1171 25 1 4.2866 0.4876 -1.1578 26 1 6.1899 -0.9012 -1.1286 27 1 5.4698 -1.5262 -2.6429 28 1 6.5308 -4.0322 -1.7731 29 1 5.8170 -5.9965 -0.4788 30 1 3.9635 -5.8050 1.1307 31 1 2.1335 -2.7622 1.7675 32 1 2.8060 -5.6557 2.3469 33 1 -0.0191 -4.3201 2.0775 34 1 0.3129 -6.0636 2.5798 35 1 1.6539 -5.2350 4.5672 36 1 1.3214 -3.4918 4.0643 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261149755.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:37 Heat of formation + Delta-G solvation = 35.599827 kcal Electronic energy + Delta-G solvation = -17433.099134 eV Core-core repulsion = 14881.700379 eV Total energy + Delta-G solvation = -2551.398755 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.02384 -38.63292 -36.70102 -34.85044 -33.96237 -30.53181 -29.65631 -28.69071 -25.18733 -23.61132 -23.24250 -22.88150 -21.18777 -20.66332 -18.93548 -17.98532 -17.10586 -16.54562 -16.23767 -15.61277 -15.42312 -15.21504 -14.75702 -14.13558 -14.00555 -13.83536 -13.59855 -13.31466 -12.93907 -12.61865 -12.51314 -12.42707 -12.31899 -11.76583 -11.71831 -11.59212 -11.41155 -11.25142 -11.12285 -10.71362 -10.36212 -9.18858 -8.28026 -7.96502 -6.30296 0.71607 0.91679 1.31878 1.34880 1.44434 2.33843 2.63350 2.93993 3.07139 3.25251 3.82528 3.92368 3.99095 4.02560 4.12642 4.35998 4.39494 4.43790 4.62316 4.67203 4.75600 4.84926 4.87780 4.97150 5.04284 5.08928 5.18459 5.23814 5.29798 5.43015 5.49326 5.66315 5.68671 5.82257 6.01627 6.24953 6.36496 6.74017 6.80029 6.95441 7.34578 8.87287 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.016567 B = 0.011119 C = 0.007067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.721410 B = 2517.610829 C = 3961.017975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.019 3.981 3 Si 0.935 3.065 4 H -0.264 1.264 5 H -0.296 1.296 6 H -0.249 1.249 7 C -0.504 4.504 8 H 0.043 0.957 9 C 0.051 3.949 10 H 0.025 0.975 11 C -0.128 4.128 12 C -0.071 4.071 13 C -0.075 4.075 14 C -0.177 4.177 15 C -0.080 4.080 16 C -0.217 4.217 17 C 0.215 3.785 18 N -0.724 5.724 19 C 0.077 3.923 20 C -0.206 4.206 21 C -0.184 4.184 22 C -0.167 4.167 23 H 0.264 0.736 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.136 0.864 29 H 0.152 0.848 30 H 0.138 0.862 31 H 0.402 0.598 32 H 0.148 0.852 33 H 0.065 0.935 34 H 0.123 0.877 35 H 0.130 0.870 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.344 -9.014 2.446 13.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.190 1.190 5 H -0.223 1.223 6 H -0.173 1.173 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.033 3.967 10 H 0.043 0.957 11 C -0.165 4.165 12 C -0.108 4.108 13 C -0.076 4.076 14 C -0.197 4.197 15 C -0.098 4.098 16 C -0.239 4.239 17 C 0.112 3.888 18 N -0.352 5.352 19 C -0.030 4.030 20 C -0.245 4.245 21 C -0.222 4.222 22 C -0.172 4.172 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.108 0.892 27 H 0.105 0.895 28 H 0.154 0.846 29 H 0.169 0.831 30 H 0.156 0.844 31 H 0.240 0.760 32 H 0.165 0.835 33 H 0.084 0.916 34 H 0.141 0.859 35 H 0.148 0.852 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.159 -9.054 2.531 13.842 hybrid contribution -0.863 1.523 0.069 1.751 sum 9.297 -7.531 2.600 12.244 Atomic orbital electron populations 1.70051 1.08003 1.27742 1.52806 1.25764 0.95251 1.02508 0.94326 0.85998 0.79387 0.79365 0.79204 1.18954 1.22325 1.17314 1.21198 0.90516 0.93001 1.49445 0.93838 1.18583 0.94089 0.90085 0.93980 0.95740 1.22602 0.96912 0.98182 0.98845 1.21019 0.97616 0.91443 1.00715 1.20692 0.94880 0.95850 0.96129 1.20590 1.03271 0.91553 1.04291 1.21028 0.95550 0.98845 0.94398 1.20789 1.01697 0.95693 1.05726 1.17782 0.88107 0.93468 0.89470 1.44649 1.36074 1.11993 1.42469 1.21787 0.94329 0.91587 0.95305 1.23441 0.95173 1.02968 1.02876 1.23400 1.03984 1.02506 0.92351 1.20401 1.00199 0.95515 1.01040 0.92751 0.92745 0.92317 0.89249 0.89511 0.84577 0.83062 0.84432 0.76044 0.83504 0.91648 0.85891 0.85182 0.90417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.48 13.96 21.45 0.30 -58.18 16 2 C 0.02 1.08 5.46 84.65 0.46 1.55 16 3 Si 0.93 44.41 24.77 68.60 1.70 46.11 16 4 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.25 -11.11 6.41 99.48 0.64 -10.48 16 7 C -0.50 -28.32 7.40 25.60 0.19 -28.13 16 8 H 0.04 2.72 6.85 -2.91 -0.02 2.70 16 9 C 0.05 2.46 2.20 -11.62 -0.03 2.43 16 10 H 0.02 1.22 7.09 -2.39 -0.02 1.21 16 11 C -0.13 -5.40 5.09 31.51 0.16 -5.24 16 12 C -0.07 -2.42 6.77 30.52 0.21 -2.22 16 13 C -0.07 -2.79 6.14 -19.61 -0.12 -2.91 16 14 C -0.18 -5.47 10.03 22.33 0.22 -5.25 16 15 C -0.08 -2.29 10.04 22.22 0.22 -2.07 16 16 C -0.22 -7.07 9.32 22.37 0.21 -6.87 16 17 C 0.21 8.70 6.51 38.25 0.25 8.95 16 18 N -0.72 -29.17 5.25 -318.84 -1.67 -30.84 16 19 C 0.08 2.36 6.32 44.99 0.28 2.65 16 20 C -0.21 -6.05 10.46 30.60 0.32 -5.73 16 21 C -0.18 -4.96 10.45 30.59 0.32 -4.64 16 22 C -0.17 -7.31 5.57 -19.47 -0.11 -7.42 16 23 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 24 H 0.05 2.47 7.91 -2.38 -0.02 2.45 16 25 H 0.06 2.35 5.87 -2.39 -0.01 2.33 16 26 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 27 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 29 H 0.15 3.10 8.06 -2.91 -0.02 3.07 16 30 H 0.14 3.69 5.88 -2.92 -0.02 3.67 16 31 H 0.40 18.79 6.41 -92.71 -0.59 18.19 16 32 H 0.15 3.68 5.89 -2.38 -0.01 3.67 16 33 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 35 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -65.82 285.54 3.34 -62.48 By element: Atomic # 1 Polarization: 34.89 SS G_CDS: 0.42 Total: 35.31 kcal Atomic # 6 Polarization: -57.47 SS G_CDS: 2.59 Total: -54.88 kcal Atomic # 7 Polarization: -87.65 SS G_CDS: -1.38 Total: -89.02 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.70 Total: 46.11 kcal Total: -65.82 3.34 -62.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261149755.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.083 kcal (2) G-P(sol) polarization free energy of solvation -65.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds