Wall clock time and date at job start Mon Mar 30 2020 05:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 119.99820 * 2 1 4 4 H 1.48498 * 109.47220 * 270.00083 * 3 2 1 5 5 H 1.48506 * 109.47202 * 29.99811 * 3 2 1 6 6 H 1.48495 * 109.47273 * 149.99775 * 3 2 1 7 7 C 1.37880 * 120.00060 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99543 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99841 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.26860 * 302.07110 * 9 7 2 11 11 C 1.54342 * 110.30127 * 179.97438 * 9 7 2 12 12 C 1.54336 * 102.39948 * 267.36116 * 11 9 7 13 13 C 1.51376 * 105.17435 * 333.62127 * 12 11 9 14 14 C 1.38373 * 130.32496 * 197.20382 * 13 12 11 15 15 C 1.38771 * 120.16103 * 179.97438 * 14 13 12 16 16 N 1.39672 * 120.11581 * 180.02562 * 15 14 13 17 17 C 1.46501 * 120.00343 * 179.97438 * 16 15 14 18 18 C 1.53000 * 117.50055 * 223.75114 * 17 16 15 19 19 C 1.52995 * 117.50101 * 155.08716 * 17 16 15 20 20 C 1.38934 * 119.77283 * 0.02562 * 15 14 13 21 21 C 1.37960 * 119.85934 * 0.02562 * 20 15 14 22 22 C 1.38294 * 109.75157 * 17.47300 * 13 12 11 23 23 H 0.96989 * 120.00357 * 0.02562 * 1 2 3 24 24 H 1.09000 * 110.82077 * 149.12855 * 11 9 7 25 25 H 1.09005 * 110.98772 * 25.66563 * 11 9 7 26 26 H 1.09003 * 110.29658 * 214.69595 * 12 11 9 27 27 H 1.08995 * 110.30350 * 92.54713 * 12 11 9 28 28 H 1.08005 * 119.91775 * 359.97438 * 14 13 12 29 29 H 0.97003 * 120.00183 * 359.97438 * 16 15 14 30 30 H 1.08998 * 115.54574 * 9.41742 * 17 16 15 31 31 H 1.08995 * 117.49823 * 359.97438 * 18 17 16 32 32 H 1.09001 * 117.49952 * 145.02031 * 18 17 16 33 33 H 1.08998 * 117.49931 * 214.97892 * 19 17 16 34 34 H 1.09003 * 117.49995 * 359.97438 * 19 17 16 35 35 H 1.07998 * 120.06692 * 179.97438 * 20 15 14 36 36 H 1.08002 * 119.83825 * 179.97438 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.5925 -2.5541 0.8685 11 6 2.2370 -3.6867 0.0015 12 6 2.3941 -3.9867 -1.5043 13 6 1.1088 -3.5027 -2.1409 14 6 0.5596 -3.7883 -3.3785 15 6 -0.6494 -3.2192 -3.7529 16 7 -1.2031 -3.5087 -5.0021 17 6 -2.4799 -2.9069 -5.3946 18 6 -3.5093 -3.8134 -6.0725 19 6 -2.7606 -2.7588 -6.8913 20 6 -1.3071 -2.3605 -2.8809 21 6 -0.7552 -2.0779 -1.6486 22 6 0.4546 -2.6428 -1.2777 23 1 -0.4850 0.8399 -0.0004 24 1 1.8120 -4.5431 0.5249 25 1 3.1925 -3.4010 0.4414 26 1 2.5162 -5.0577 -1.6657 27 1 3.2461 -3.4424 -1.9114 28 1 1.0732 -4.4559 -4.0546 29 1 -0.7424 -4.1081 -5.6098 30 1 -2.8550 -2.1266 -4.7325 31 1 -3.2365 -4.8573 -6.2267 32 1 -4.5618 -3.6290 -5.8567 33 1 -3.3207 -1.8812 -7.2139 34 1 -1.9951 -3.1087 -7.5840 35 1 -2.2480 -1.9147 -3.1677 36 1 -1.2665 -1.4100 -0.9712 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261161270.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:30 Heat of formation + Delta-G solvation = 50.685659 kcal Electronic energy + Delta-G solvation = -17034.920460 eV Core-core repulsion = 14484.175876 eV Total energy + Delta-G solvation = -2550.744584 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.17149 -37.66549 -35.16432 -32.50697 -31.88132 -29.65721 -27.06532 -26.55222 -23.84647 -22.38001 -22.12634 -21.27134 -19.38562 -19.14897 -16.64504 -16.42285 -15.91344 -14.70304 -14.33641 -14.28187 -13.84637 -13.51521 -12.80767 -12.63597 -12.34288 -12.19500 -11.92733 -11.59685 -11.34446 -11.06509 -10.83417 -10.77981 -10.54336 -10.41401 -10.26838 -10.07080 -9.65683 -9.33088 -9.18018 -8.53703 -8.39278 -7.64864 -6.41419 -5.93174 -4.03603 2.50627 2.72863 3.32254 3.38654 3.41316 3.71231 3.97128 4.44525 4.87281 4.94216 5.00524 5.11308 5.32055 5.53659 5.59293 5.75604 5.85972 5.90042 5.98966 6.05921 6.10257 6.24193 6.39697 6.53747 6.65454 6.72584 6.91877 7.02655 7.11490 7.32170 7.36466 7.63068 7.76355 7.81192 7.98045 8.17612 8.26191 8.36482 8.41113 8.98674 9.59537 11.06390 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.024601 B = 0.006779 C = 0.005775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.884247 B = 4129.202384 C = 4847.102229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.064 3.936 3 Si 0.891 3.109 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.501 4.501 8 H 0.058 0.942 9 C 0.078 3.922 10 H 0.034 0.966 11 C -0.116 4.116 12 C -0.068 4.068 13 C -0.081 4.081 14 C -0.193 4.193 15 C 0.179 3.821 16 N -0.727 5.727 17 C 0.106 3.894 18 C -0.207 4.207 19 C -0.202 4.202 20 C -0.207 4.207 21 C -0.042 4.042 22 C -0.071 4.071 23 H 0.260 0.740 24 H 0.046 0.954 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.098 0.902 29 H 0.391 0.609 30 H 0.128 0.872 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.789 -6.303 -8.667 11.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.539 4.539 8 H 0.076 0.924 9 C 0.060 3.940 10 H 0.052 0.948 11 C -0.154 4.154 12 C -0.105 4.105 13 C -0.082 4.082 14 C -0.215 4.215 15 C 0.081 3.919 16 N -0.357 5.357 17 C -0.002 4.002 18 C -0.246 4.246 19 C -0.241 4.241 20 C -0.229 4.229 21 C -0.061 4.061 22 C -0.073 4.073 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.117 0.883 29 H 0.225 0.775 30 H 0.146 0.854 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.123 0.877 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.057 -6.065 -8.608 11.285 hybrid contribution 0.557 0.818 -0.690 1.207 sum -3.501 -5.246 -9.298 11.235 Atomic orbital electron populations 1.69809 1.05875 1.26242 1.50222 1.24948 0.94858 0.99015 0.94970 0.86603 0.79896 0.83536 0.78030 1.20831 1.21235 1.19936 1.21111 0.92670 0.89919 1.50190 0.92402 1.18287 0.91832 0.92428 0.91460 0.94820 1.22355 1.00455 0.98527 0.94059 1.20880 0.94927 0.98484 0.96176 1.20364 0.96362 0.97936 0.93549 1.19655 0.96906 1.07244 0.97675 1.17409 0.92935 0.96336 0.85215 1.43743 1.22146 1.53379 1.16476 1.21400 0.86358 0.98680 0.93779 1.23460 0.98315 0.96827 1.06041 1.23367 1.03781 1.01507 0.95459 1.20585 1.01656 1.04395 0.96264 1.21136 0.94832 0.95354 0.94729 1.20909 0.93428 0.94169 0.98806 0.93040 0.93501 0.91831 0.93059 0.91334 0.88345 0.77491 0.85403 0.89031 0.88616 0.88485 0.89038 0.87713 0.83557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.41 9.96 55.43 0.55 -23.86 16 2 C 0.06 1.74 5.33 -17.82 -0.10 1.64 16 3 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 7 C -0.50 -13.63 8.49 -34.44 -0.29 -13.92 16 8 H 0.06 1.55 7.59 -52.49 -0.40 1.16 16 9 C 0.08 1.97 2.78 -91.88 -0.26 1.71 16 10 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 11 C -0.12 -2.43 6.58 -25.33 -0.17 -2.60 16 12 C -0.07 -1.34 6.76 -26.85 -0.18 -1.52 16 13 C -0.08 -1.79 6.13 -104.22 -0.64 -2.43 16 14 C -0.19 -3.84 9.89 -39.33 -0.39 -4.23 16 15 C 0.18 3.45 6.65 -83.83 -0.56 2.90 16 16 N -0.73 -11.21 5.74 -52.20 -0.30 -11.51 16 17 C 0.11 1.42 6.32 -67.93 -0.43 0.99 16 18 C -0.21 -2.26 10.46 -26.69 -0.28 -2.54 16 19 C -0.20 -2.19 10.46 -26.69 -0.28 -2.47 16 20 C -0.21 -4.32 9.32 -39.43 -0.37 -4.69 16 21 C -0.04 -1.00 8.95 -39.56 -0.35 -1.35 16 22 C -0.07 -1.74 5.15 -104.14 -0.54 -2.28 16 23 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.06 1.28 7.76 -51.93 -0.40 0.88 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16 29 H 0.39 5.29 8.84 -40.82 -0.36 4.93 16 30 H 0.13 1.78 5.91 -51.93 -0.31 1.47 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.10 1.95 5.90 -52.49 -0.31 1.64 16 36 H 0.15 3.72 6.08 -52.49 -0.32 3.40 16 LS Contribution 293.41 15.07 4.42 4.42 Total: -1.00 -28.35 293.41 -10.21 -38.56 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -5.04 Total: 6.90 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: -4.82 Total: -30.79 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.25 Total: -35.37 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.35 -10.21 -38.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261161270.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.245 kcal (2) G-P(sol) polarization free energy of solvation -28.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds