Wall clock time and date at job start Mon Mar 30 2020 05:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 119.99820 * 2 1 4 4 H 1.48498 * 109.47220 * 270.00083 * 3 2 1 5 5 H 1.48506 * 109.47202 * 29.99811 * 3 2 1 6 6 H 1.48495 * 109.47273 * 149.99775 * 3 2 1 7 7 C 1.37880 * 120.00060 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99543 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99841 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.26860 * 302.07110 * 9 7 2 11 11 C 1.54342 * 110.30127 * 179.97438 * 9 7 2 12 12 C 1.54336 * 102.39948 * 267.36116 * 11 9 7 13 13 C 1.51376 * 105.17435 * 333.62127 * 12 11 9 14 14 C 1.38373 * 130.32496 * 197.20382 * 13 12 11 15 15 C 1.38771 * 120.16103 * 179.97438 * 14 13 12 16 16 N 1.39672 * 120.11581 * 180.02562 * 15 14 13 17 17 C 1.46501 * 120.00343 * 179.97438 * 16 15 14 18 18 C 1.53000 * 117.50055 * 223.75114 * 17 16 15 19 19 C 1.52995 * 117.50101 * 155.08716 * 17 16 15 20 20 C 1.38934 * 119.77283 * 0.02562 * 15 14 13 21 21 C 1.37960 * 119.85934 * 0.02562 * 20 15 14 22 22 C 1.38294 * 109.75157 * 17.47300 * 13 12 11 23 23 H 0.96989 * 120.00357 * 0.02562 * 1 2 3 24 24 H 1.09000 * 110.82077 * 149.12855 * 11 9 7 25 25 H 1.09005 * 110.98772 * 25.66563 * 11 9 7 26 26 H 1.09003 * 110.29658 * 214.69595 * 12 11 9 27 27 H 1.08995 * 110.30350 * 92.54713 * 12 11 9 28 28 H 1.08005 * 119.91775 * 359.97438 * 14 13 12 29 29 H 0.97003 * 120.00183 * 359.97438 * 16 15 14 30 30 H 1.08998 * 115.54574 * 9.41742 * 17 16 15 31 31 H 1.08995 * 117.49823 * 359.97438 * 18 17 16 32 32 H 1.09001 * 117.49952 * 145.02031 * 18 17 16 33 33 H 1.08998 * 117.49931 * 214.97892 * 19 17 16 34 34 H 1.09003 * 117.49995 * 359.97438 * 19 17 16 35 35 H 1.07998 * 120.06692 * 179.97438 * 20 15 14 36 36 H 1.08002 * 119.83825 * 179.97438 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.5925 -2.5541 0.8685 11 6 2.2370 -3.6867 0.0015 12 6 2.3941 -3.9867 -1.5043 13 6 1.1088 -3.5027 -2.1409 14 6 0.5596 -3.7883 -3.3785 15 6 -0.6494 -3.2192 -3.7529 16 7 -1.2031 -3.5087 -5.0021 17 6 -2.4799 -2.9069 -5.3946 18 6 -3.5093 -3.8134 -6.0725 19 6 -2.7606 -2.7588 -6.8913 20 6 -1.3071 -2.3605 -2.8809 21 6 -0.7552 -2.0779 -1.6486 22 6 0.4546 -2.6428 -1.2777 23 1 -0.4850 0.8399 -0.0004 24 1 1.8120 -4.5431 0.5249 25 1 3.1925 -3.4010 0.4414 26 1 2.5162 -5.0577 -1.6657 27 1 3.2461 -3.4424 -1.9114 28 1 1.0732 -4.4559 -4.0546 29 1 -0.7424 -4.1081 -5.6098 30 1 -2.8550 -2.1266 -4.7325 31 1 -3.2365 -4.8573 -6.2267 32 1 -4.5618 -3.6290 -5.8567 33 1 -3.3207 -1.8812 -7.2139 34 1 -1.9951 -3.1087 -7.5840 35 1 -2.2480 -1.9147 -3.1677 36 1 -1.2665 -1.4100 -0.9712 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261161270.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:30 Heat of formation + Delta-G solvation = 36.401273 kcal Electronic energy + Delta-G solvation = -17035.539877 eV Core-core repulsion = 14484.175876 eV Total energy + Delta-G solvation = -2551.364001 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.75919 -38.87589 -36.63426 -34.47376 -33.32898 -31.35840 -28.79093 -28.20266 -25.69075 -23.59552 -23.20586 -22.66936 -21.17799 -20.60867 -18.53770 -17.85953 -17.19807 -16.46824 -15.98811 -15.65805 -15.54801 -14.88543 -14.26287 -14.11495 -14.00509 -13.88583 -13.35915 -13.07405 -12.86473 -12.55992 -12.44612 -12.39278 -12.23615 -12.06099 -11.73779 -11.39122 -11.24515 -11.13275 -10.96932 -10.48274 -10.01559 -9.29416 -8.12929 -7.76919 -6.15597 0.83731 1.08698 1.41087 1.42093 1.51240 2.44897 2.50268 3.00832 3.22292 3.37096 3.88582 3.95274 4.09910 4.15874 4.25602 4.37634 4.51698 4.65932 4.72200 4.78418 4.83536 4.94988 5.02316 5.03965 5.17657 5.24602 5.30760 5.40202 5.44466 5.56110 5.65427 5.76610 5.91205 6.10111 6.23316 6.36040 6.50470 6.69709 6.94744 7.01985 7.49350 8.99567 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.024601 B = 0.006779 C = 0.005775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.884247 B = 4129.202384 C = 4847.102229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.016 3.984 3 Si 0.950 3.050 4 H -0.284 1.284 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.069 3.931 10 H -0.005 1.005 11 C -0.111 4.111 12 C -0.061 4.061 13 C -0.086 4.086 14 C -0.197 4.197 15 C 0.194 3.806 16 N -0.717 5.717 17 C 0.068 3.932 18 C -0.191 4.191 19 C -0.184 4.184 20 C -0.217 4.217 21 C -0.064 4.064 22 C -0.113 4.113 23 H 0.258 0.742 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.131 0.869 29 H 0.404 0.596 30 H 0.117 0.883 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.120 0.880 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.452 -7.375 -11.151 13.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.184 4.184 3 Si 0.776 3.224 4 H -0.210 1.210 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.073 0.927 9 C 0.051 3.949 10 H 0.013 0.987 11 C -0.148 4.148 12 C -0.098 4.098 13 C -0.087 4.087 14 C -0.219 4.219 15 C 0.093 3.907 16 N -0.347 5.347 17 C -0.039 4.039 18 C -0.230 4.230 19 C -0.222 4.222 20 C -0.240 4.240 21 C -0.083 4.083 22 C -0.115 4.115 23 H 0.067 0.933 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.105 0.895 27 H 0.089 0.911 28 H 0.149 0.851 29 H 0.239 0.761 30 H 0.134 0.866 31 H 0.116 0.884 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.119 0.881 35 H 0.138 0.862 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.737 -7.155 -11.127 13.746 hybrid contribution 0.339 1.114 0.009 1.165 sum -3.398 -6.040 -11.118 13.101 Atomic orbital electron populations 1.69986 1.06893 1.26595 1.50618 1.25691 0.95708 1.02022 0.94959 0.85687 0.79016 0.79947 0.77761 1.20993 1.20866 1.19097 1.21412 0.92700 0.91305 1.50286 0.92671 1.18294 0.92302 0.93581 0.90763 0.98676 1.22294 0.99475 0.97324 0.95737 1.20873 0.93808 1.00574 0.94550 1.20674 0.96889 0.97141 0.93979 1.19968 0.97074 1.07453 0.97404 1.17469 0.92436 0.94641 0.86163 1.43728 1.22757 1.53156 1.15043 1.21579 0.86464 1.00161 0.95689 1.23505 0.98319 0.96958 1.04181 1.23441 1.03488 1.01901 0.93378 1.20675 1.02488 1.05195 0.95602 1.21023 0.95397 0.96047 0.95842 1.20904 0.94540 0.96729 0.99332 0.93276 0.91927 0.91439 0.89550 0.91147 0.85124 0.76060 0.86564 0.88414 0.87358 0.87161 0.88123 0.86234 0.86347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.14 9.96 21.45 0.21 -51.92 16 2 C 0.02 0.87 5.33 84.65 0.45 1.33 16 3 Si 0.95 44.55 29.54 68.60 2.03 46.58 16 4 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.52 -29.08 8.49 25.60 0.22 -28.87 16 8 H 0.06 3.02 7.59 -2.91 -0.02 3.00 16 9 C 0.07 3.61 2.78 -11.61 -0.03 3.58 16 10 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 11 C -0.11 -4.61 6.58 31.50 0.21 -4.41 16 12 C -0.06 -2.31 6.76 30.52 0.21 -2.10 16 13 C -0.09 -3.72 6.13 -19.60 -0.12 -3.84 16 14 C -0.20 -7.42 9.89 22.43 0.22 -7.20 16 15 C 0.19 7.18 6.65 38.19 0.25 7.43 16 16 N -0.72 -20.21 5.74 -319.06 -1.83 -22.04 16 17 C 0.07 1.66 6.32 44.99 0.28 1.95 16 18 C -0.19 -3.53 10.46 30.62 0.32 -3.21 16 19 C -0.18 -3.33 10.46 30.62 0.32 -3.01 16 20 C -0.22 -9.15 9.32 22.37 0.21 -8.95 16 21 C -0.06 -3.20 8.95 22.28 0.20 -3.00 16 22 C -0.11 -5.70 5.15 -19.55 -0.10 -5.80 16 23 H 0.26 14.27 8.31 -92.72 -0.77 13.50 16 24 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.07 2.70 7.76 -2.38 -0.02 2.68 16 26 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 27 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 28 H 0.13 4.03 8.06 -2.91 -0.02 4.00 16 29 H 0.40 9.48 8.84 -92.71 -0.82 8.66 16 30 H 0.12 3.10 5.91 -2.39 -0.01 3.08 16 31 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.12 4.51 5.90 -2.91 -0.02 4.49 16 36 H 0.12 6.47 6.08 -2.91 -0.02 6.45 16 Total: -1.00 -63.04 293.41 3.31 -59.73 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 0.26 Total: 23.76 kcal Atomic # 6 Polarization: -58.74 SS G_CDS: 2.64 Total: -56.10 kcal Atomic # 7 Polarization: -72.34 SS G_CDS: -1.62 Total: -73.96 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -63.04 3.31 -59.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261161270.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.130 kcal (2) G-P(sol) polarization free energy of solvation -63.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds