Wall clock time and date at job start Mon Mar 30 2020 05:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46631 * 2 1 4 4 C 1.50705 * 109.47012 * 240.00223 * 2 1 3 5 5 H 1.07994 * 119.99489 * 239.99612 * 4 2 1 6 6 C 1.37878 * 119.99929 * 59.99755 * 4 2 1 7 7 N 1.31511 * 120.00104 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99953 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46829 * 59.99606 * 8 6 4 10 10 H 1.48491 * 109.47279 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47002 * 300.00231 * 8 6 4 12 12 N 1.46490 * 109.47577 * 119.99983 * 2 1 3 13 13 C 1.37846 * 119.99915 * 275.00593 * 12 2 1 14 14 N 1.32639 * 120.91692 * 359.97438 * 13 12 2 15 15 C 1.32335 * 121.49514 * 180.02562 * 14 13 12 16 16 N 1.31198 * 122.96990 * 0.26586 * 15 14 13 17 17 C 1.34117 * 120.46137 * 359.47887 * 16 15 14 18 18 C 1.40159 * 121.98463 * 180.25293 * 17 16 15 19 19 C 1.36313 * 119.57540 * 180.28011 * 18 17 16 20 20 C 1.39209 * 121.03469 * 359.97438 * 19 18 17 21 21 C 1.36383 * 120.89820 * 359.97438 * 20 19 18 22 22 C 1.39927 * 119.50067 * 0.02839 * 21 20 19 23 23 H 1.09002 * 109.47344 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47402 * 300.00161 * 1 2 3 25 25 H 1.08996 * 109.47737 * 60.00021 * 1 2 3 26 26 H 0.97007 * 119.99985 * 180.02562 * 7 6 4 27 27 H 0.97006 * 119.99983 * 94.99551 * 12 2 1 28 28 H 1.08002 * 118.51135 * 179.97438 * 15 14 13 29 29 H 1.07994 * 120.21177 * 0.24790 * 18 17 16 30 30 H 1.07999 * 119.48271 * 180.02562 * 19 18 17 31 31 H 1.08004 * 119.55118 * 180.02562 * 20 19 18 32 32 H 1.08001 * 120.25136 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3224 -1.1194 -4.0081 9 1 1.8280 -2.5198 -4.0082 10 1 1.8277 -0.4191 -5.2205 11 1 3.8073 -1.1188 -4.0078 12 7 2.0184 -0.6905 1.1961 13 6 2.1499 -0.0029 2.3835 14 7 1.8401 1.2843 2.4635 15 6 1.9625 1.9557 3.5973 16 7 2.3972 1.4086 4.7077 17 6 2.7337 0.1107 4.7398 18 6 3.1966 -0.5075 5.9094 19 6 3.5304 -1.8289 5.8850 20 6 3.4184 -2.5761 4.7158 21 6 2.9705 -2.0060 3.5606 22 6 2.6196 -0.6515 3.5516 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 0.7087 1.1615 -3.4844 27 1 2.2490 -1.6318 1.1525 28 1 1.6968 3.0025 3.6079 29 1 3.2888 0.0595 6.8239 30 1 3.8866 -2.3039 6.7872 31 1 3.6892 -3.6216 4.7237 32 1 2.8873 -2.5955 2.6595 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264308708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:16 Heat of formation + Delta-G solvation = 62.316191 kcal Electronic energy + Delta-G solvation = -16674.221667 eV Core-core repulsion = 14020.441078 eV Total energy + Delta-G solvation = -2653.780590 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.79599 -37.36731 -36.40720 -33.59091 -31.83303 -31.06347 -29.82743 -28.27447 -25.37177 -24.11510 -23.71956 -21.69824 -20.50090 -18.68232 -17.62103 -16.91939 -16.13885 -15.07839 -14.84578 -14.62475 -14.60514 -14.02899 -13.52049 -13.33343 -12.62471 -12.41561 -12.14779 -11.86819 -11.49354 -11.38547 -11.11841 -10.92385 -10.60184 -10.33783 -10.30724 -10.11138 -9.18682 -9.00359 -8.76747 -8.58196 -8.44242 -7.17142 -6.21658 -4.31997 0.83076 1.15055 2.39114 3.20126 3.25835 3.26539 3.36681 3.75893 4.27802 4.59167 4.61792 4.73392 4.90963 5.04334 5.11074 5.13780 5.43961 5.55267 5.75777 6.04986 6.20106 6.34028 6.53836 6.63968 6.72400 6.92294 6.95876 7.03860 7.30415 7.44872 7.54525 7.75896 7.93911 8.08764 8.35655 8.69461 8.95543 9.34975 10.83988 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.034629 B = 0.006015 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.367498 B = 4654.208230 C = 5233.338246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.266 3.734 3 H 0.060 0.940 4 C -0.542 4.542 5 H 0.060 0.940 6 C 0.070 3.930 7 N -0.880 5.880 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.661 5.661 13 C 0.476 3.524 14 N -0.596 5.596 15 C 0.354 3.646 16 N -0.586 5.586 17 C 0.194 3.806 18 C -0.123 4.123 19 C -0.079 4.079 20 C -0.156 4.156 21 C -0.057 4.057 22 C -0.211 4.211 23 H 0.025 0.975 24 H 0.018 0.982 25 H 0.093 0.907 26 H 0.266 0.734 27 H 0.401 0.599 28 H 0.186 0.814 29 H 0.132 0.868 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.043 -4.667 11.645 12.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.164 3.836 3 H 0.078 0.922 4 C -0.580 4.580 5 H 0.078 0.922 6 C -0.134 4.134 7 N -0.517 5.517 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.201 1.201 12 N -0.285 5.285 13 C 0.219 3.781 14 N -0.326 5.326 15 C 0.063 3.937 16 N -0.309 5.309 17 C 0.068 3.932 18 C -0.143 4.143 19 C -0.100 4.100 20 C -0.176 4.176 21 C -0.078 4.078 22 C -0.220 4.220 23 H 0.044 0.956 24 H 0.037 0.963 25 H 0.111 0.889 26 H 0.076 0.924 27 H 0.237 0.763 28 H 0.203 0.797 29 H 0.150 0.850 30 H 0.142 0.858 31 H 0.141 0.859 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.654 -3.500 11.334 12.155 hybrid contribution 0.564 -1.660 -0.971 2.004 sum 3.218 -5.160 10.363 12.016 Atomic orbital electron populations 1.22079 0.98005 0.99141 1.01199 1.18978 0.91285 0.94308 0.78985 0.92224 1.21143 1.33019 1.13524 0.90307 0.92172 1.24849 0.94646 0.94903 0.99005 1.69881 1.35449 1.22197 1.24189 0.86482 0.79208 0.79595 0.81694 1.20119 1.20992 1.20137 1.45665 1.62863 1.12334 1.07597 1.18927 0.84604 0.88730 0.85848 1.68110 1.28257 1.06909 1.29278 1.24530 0.87198 0.99533 0.82395 1.68789 1.21918 1.10457 1.29732 1.18714 0.92847 0.89721 0.91954 1.20601 1.01857 0.94753 0.97041 1.20881 0.97250 0.93840 0.97998 1.20708 1.03696 1.00200 0.92951 1.20767 0.95564 0.93012 0.98431 1.19103 1.10748 0.96531 0.95659 0.95629 0.96332 0.88871 0.92361 0.76295 0.79718 0.85041 0.85775 0.85926 0.85834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.27 37.16 0.34 -3.13 16 2 C 0.27 6.44 2.59 -69.09 -0.18 6.27 16 3 H 0.06 1.64 7.57 -51.93 -0.39 1.25 16 4 C -0.54 -13.90 8.73 -34.44 -0.30 -14.20 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 7 N -0.88 -23.96 11.32 55.43 0.63 -23.33 16 8 Si 0.90 20.16 29.54 -169.99 -5.02 15.13 16 9 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 N -0.66 -13.53 5.13 -54.62 -0.28 -13.81 16 13 C 0.48 9.53 7.52 -154.97 -1.17 8.37 16 14 N -0.60 -12.32 9.33 -13.54 -0.13 -12.45 16 15 C 0.35 6.37 12.22 -92.20 -1.13 5.24 16 16 N -0.59 -10.57 10.45 -12.65 -0.13 -10.70 16 17 C 0.19 3.37 6.61 -84.86 -0.56 2.81 16 18 C -0.12 -1.73 10.01 -39.55 -0.40 -2.12 16 19 C -0.08 -0.93 9.95 -39.91 -0.40 -1.32 16 20 C -0.16 -1.90 9.96 -39.89 -0.40 -2.29 16 21 C -0.06 -0.83 9.54 -39.62 -0.38 -1.21 16 22 C -0.21 -3.73 5.75 -106.68 -0.61 -4.34 16 23 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 26 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 27 H 0.40 7.24 6.80 -40.82 -0.28 6.96 16 28 H 0.19 2.66 8.06 -52.49 -0.42 2.23 16 29 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 30 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 32 H 0.12 1.58 6.59 -52.49 -0.35 1.24 16 LS Contribution 276.13 15.07 4.16 4.16 Total: -1.00 -28.98 276.13 -9.45 -38.43 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -3.41 Total: 6.77 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -5.27 Total: -4.21 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: 0.09 Total: -60.29 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -28.98 -9.45 -38.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264308708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.744 kcal (2) G-P(sol) polarization free energy of solvation -28.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds