Wall clock time and date at job start Mon Mar 30 2020 05:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46631 * 2 1 4 4 C 1.50705 * 109.47012 * 240.00223 * 2 1 3 5 5 H 1.07994 * 119.99489 * 239.99612 * 4 2 1 6 6 C 1.37878 * 119.99929 * 59.99755 * 4 2 1 7 7 N 1.31511 * 120.00104 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99953 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46829 * 59.99606 * 8 6 4 10 10 H 1.48491 * 109.47279 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47002 * 300.00231 * 8 6 4 12 12 N 1.46490 * 109.47577 * 119.99983 * 2 1 3 13 13 C 1.37846 * 119.99915 * 275.00593 * 12 2 1 14 14 N 1.32639 * 120.91692 * 359.97438 * 13 12 2 15 15 C 1.32335 * 121.49514 * 180.02562 * 14 13 12 16 16 N 1.31198 * 122.96990 * 0.26586 * 15 14 13 17 17 C 1.34117 * 120.46137 * 359.47887 * 16 15 14 18 18 C 1.40159 * 121.98463 * 180.25293 * 17 16 15 19 19 C 1.36313 * 119.57540 * 180.28011 * 18 17 16 20 20 C 1.39209 * 121.03469 * 359.97438 * 19 18 17 21 21 C 1.36383 * 120.89820 * 359.97438 * 20 19 18 22 22 C 1.39927 * 119.50067 * 0.02839 * 21 20 19 23 23 H 1.09002 * 109.47344 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47402 * 300.00161 * 1 2 3 25 25 H 1.08996 * 109.47737 * 60.00021 * 1 2 3 26 26 H 0.97007 * 119.99985 * 180.02562 * 7 6 4 27 27 H 0.97006 * 119.99983 * 94.99551 * 12 2 1 28 28 H 1.08002 * 118.51135 * 179.97438 * 15 14 13 29 29 H 1.07994 * 120.21177 * 0.24790 * 18 17 16 30 30 H 1.07999 * 119.48271 * 180.02562 * 19 18 17 31 31 H 1.08004 * 119.55118 * 180.02562 * 20 19 18 32 32 H 1.08001 * 120.25136 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3224 -1.1194 -4.0081 9 1 1.8280 -2.5198 -4.0082 10 1 1.8277 -0.4191 -5.2205 11 1 3.8073 -1.1188 -4.0078 12 7 2.0184 -0.6905 1.1961 13 6 2.1499 -0.0029 2.3835 14 7 1.8401 1.2843 2.4635 15 6 1.9625 1.9557 3.5973 16 7 2.3972 1.4086 4.7077 17 6 2.7337 0.1107 4.7398 18 6 3.1966 -0.5075 5.9094 19 6 3.5304 -1.8289 5.8850 20 6 3.4184 -2.5761 4.7158 21 6 2.9705 -2.0060 3.5606 22 6 2.6196 -0.6515 3.5516 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 0.7087 1.1615 -3.4844 27 1 2.2490 -1.6318 1.1525 28 1 1.6968 3.0025 3.6079 29 1 3.2888 0.0595 6.8239 30 1 3.8866 -2.3039 6.7872 31 1 3.6892 -3.6216 4.7237 32 1 2.8873 -2.5955 2.6595 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264308708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:16 Heat of formation + Delta-G solvation = 46.187566 kcal Electronic energy + Delta-G solvation = -16674.921057 eV Core-core repulsion = 14020.441078 eV Total energy + Delta-G solvation = -2654.479979 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.10345 -38.63674 -37.93487 -35.32952 -33.40836 -32.37908 -31.12264 -29.89805 -27.35428 -25.41816 -25.01884 -23.12576 -22.11642 -20.04728 -18.98035 -18.45889 -17.70335 -16.86062 -16.16558 -16.04324 -15.80945 -15.44388 -14.89620 -14.65288 -14.44744 -14.07191 -13.36459 -13.21392 -13.00521 -12.92434 -12.75112 -12.49805 -12.39149 -12.17187 -12.04777 -11.45035 -11.10053 -10.61237 -10.27742 -9.96324 -9.90609 -8.59468 -8.19081 -6.36771 -0.38827 -0.06588 1.09430 1.44253 1.45505 1.53425 2.21062 2.22141 2.46245 3.11220 3.27634 3.38795 3.49730 3.70648 3.85453 4.11189 4.39440 4.46079 4.58846 4.73231 4.93832 4.97807 5.08159 5.10715 5.29511 5.36408 5.48527 5.51765 5.62422 5.77365 5.86757 5.98280 6.11697 6.38320 6.65469 6.88690 7.33587 7.54003 8.86293 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.034629 B = 0.006015 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.367498 B = 4654.208230 C = 5233.338246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.279 3.721 3 H 0.018 0.982 4 C -0.555 4.555 5 H 0.069 0.931 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.970 3.030 9 H -0.265 1.265 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.667 5.667 13 C 0.459 3.541 14 N -0.631 5.631 15 C 0.337 3.663 16 N -0.587 5.587 17 C 0.161 3.839 18 C -0.132 4.132 19 C -0.062 4.062 20 C -0.136 4.136 21 C -0.077 4.077 22 C -0.223 4.223 23 H 0.031 0.969 24 H 0.017 0.983 25 H 0.069 0.931 26 H 0.266 0.734 27 H 0.411 0.589 28 H 0.210 0.790 29 H 0.148 0.852 30 H 0.170 0.830 31 H 0.163 0.837 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.331 -7.175 13.238 15.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.176 3.824 3 H 0.036 0.964 4 C -0.593 4.593 5 H 0.087 0.913 6 C -0.180 4.180 7 N -0.549 5.549 8 Si 0.794 3.206 9 H -0.190 1.190 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.294 5.294 13 C 0.203 3.797 14 N -0.361 5.361 15 C 0.047 3.953 16 N -0.309 5.309 17 C 0.036 3.964 18 C -0.151 4.151 19 C -0.082 4.082 20 C -0.154 4.154 21 C -0.097 4.097 22 C -0.232 4.232 23 H 0.050 0.950 24 H 0.036 0.964 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.249 0.751 28 H 0.226 0.774 29 H 0.166 0.834 30 H 0.188 0.812 31 H 0.180 0.820 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.958 -6.015 12.995 14.856 hybrid contribution 0.232 -0.931 -1.244 1.571 sum 4.190 -6.946 11.751 14.279 Atomic orbital electron populations 1.21880 0.98147 0.99019 0.99886 1.18481 0.91069 0.92476 0.80398 0.96416 1.21491 1.33008 1.13773 0.91006 0.91324 1.25705 0.94777 0.95540 1.02023 1.70024 1.36580 1.23595 1.24744 0.85437 0.78573 0.78735 0.77833 1.19026 1.20995 1.19785 1.45213 1.64625 1.12647 1.06907 1.19176 0.85212 0.88934 0.86400 1.68061 1.29303 1.07925 1.30792 1.24973 0.87809 1.00534 0.81983 1.68806 1.21309 1.11288 1.29467 1.19248 0.94186 0.89692 0.93302 1.20915 1.01774 0.96070 0.96379 1.21425 0.94582 0.92704 0.99495 1.21245 1.00430 1.01969 0.91783 1.21020 0.96552 0.91842 1.00306 1.19242 1.11213 0.98077 0.94638 0.94955 0.96432 0.91230 0.92435 0.75115 0.77363 0.83438 0.81237 0.81958 0.84639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.46 9.27 71.98 0.67 -5.79 16 2 C 0.28 14.03 2.59 44.25 0.11 14.14 16 3 H 0.02 1.04 7.57 -2.38 -0.02 1.02 16 4 C -0.55 -28.87 8.73 25.60 0.22 -28.65 16 5 H 0.07 3.36 7.74 -2.91 -0.02 3.34 16 6 C 0.02 1.07 5.30 84.66 0.45 1.52 16 7 N -0.91 -50.99 11.32 21.45 0.24 -50.75 16 8 Si 0.97 41.35 29.54 68.60 2.03 43.37 16 9 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 10 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 12 N -0.67 -27.99 5.13 -326.71 -1.68 -29.66 16 13 C 0.46 18.87 7.52 134.00 1.01 19.88 16 14 N -0.63 -27.25 9.33 -196.75 -1.83 -29.09 16 15 C 0.34 12.52 12.22 180.90 2.21 14.73 16 16 N -0.59 -21.21 10.45 -193.94 -2.03 -23.24 16 17 C 0.16 5.45 6.61 40.10 0.27 5.72 16 18 C -0.13 -3.32 10.01 22.29 0.22 -3.10 16 19 C -0.06 -1.14 9.95 22.05 0.22 -0.92 16 20 C -0.14 -2.66 9.96 22.07 0.22 -2.44 16 21 C -0.08 -2.05 9.54 22.25 0.21 -1.84 16 22 C -0.22 -7.77 5.75 -21.20 -0.12 -7.89 16 23 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.07 3.77 6.07 -2.39 -0.01 3.75 16 26 H 0.27 14.16 8.31 -92.70 -0.77 13.39 16 27 H 0.41 14.93 6.80 -92.70 -0.63 14.30 16 28 H 0.21 6.22 8.06 -2.91 -0.02 6.20 16 29 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 30 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 31 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 32 H 0.14 3.20 6.59 -2.91 -0.02 3.18 16 Total: -1.00 -64.85 276.13 2.94 -61.91 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.51 Total: 22.09 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 5.69 Total: 5.36 kcal Atomic # 7 Polarization: -127.44 SS G_CDS: -5.29 Total: -132.74 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.37 kcal Total: -64.85 2.94 -61.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264308708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.101 kcal (2) G-P(sol) polarization free energy of solvation -64.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds