Wall clock time and date at job start Mon Mar 30 2020 05:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47250 * 2 1 4 4 C 1.50699 * 109.46780 * 119.99117 * 2 1 3 5 5 H 1.07994 * 120.00139 * 120.00229 * 4 2 1 6 6 C 1.37880 * 120.00020 * 300.00098 * 4 2 1 7 7 N 1.31509 * 119.99995 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00040 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47197 * 89.99809 * 8 6 4 10 10 H 1.48502 * 109.47307 * 210.00624 * 8 6 4 11 11 H 1.48502 * 109.46913 * 329.99933 * 8 6 4 12 12 N 1.46491 * 109.47491 * 239.99304 * 2 1 3 13 13 C 1.37848 * 120.00391 * 85.00395 * 12 2 1 14 14 N 1.32651 * 120.90849 * 359.97438 * 13 12 2 15 15 C 1.32329 * 121.48999 * 180.02562 * 14 13 12 16 16 N 1.31194 * 122.97576 * 0.02562 * 15 14 13 17 17 C 1.34122 * 120.45785 * 359.97438 * 16 15 14 18 18 C 1.40153 * 121.98441 * 180.02562 * 17 16 15 19 19 C 1.36314 * 119.58654 * 179.97438 * 18 17 16 20 20 C 1.39208 * 121.02437 * 359.97438 * 19 18 17 21 21 C 1.36385 * 120.90238 * 0.02562 * 20 19 18 22 22 C 1.39934 * 119.50099 * 0.02562 * 21 20 19 23 23 H 1.09012 * 109.46990 * 60.00921 * 1 2 3 24 24 H 1.09002 * 109.47250 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47589 * 300.01077 * 1 2 3 26 26 H 0.97005 * 120.00295 * 179.97438 * 7 6 4 27 27 H 0.97000 * 120.00145 * 264.99798 * 12 2 1 28 28 H 1.08002 * 118.51338 * 179.97438 * 15 14 13 29 29 H 1.08005 * 120.20726 * 0.02562 * 18 17 16 30 30 H 1.07998 * 119.48736 * 180.02562 * 19 18 17 31 31 H 1.07999 * 119.55191 * 180.02562 * 20 19 18 32 32 H 1.08010 * 120.25091 * 179.74933 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7102 1.2306 5 1 2.6531 -1.5883 1.1317 6 6 1.6991 -0.2390 2.4828 7 7 0.9426 0.8300 2.6033 8 14 2.3222 -1.1189 4.0082 9 1 3.6302 -0.5434 4.4121 10 1 1.3440 -0.9484 5.1124 11 1 2.4877 -2.5648 3.7126 12 7 2.0184 -0.6907 -1.1960 13 6 2.1502 -0.0032 -2.3835 14 7 1.8395 1.2839 -2.4638 15 6 1.9611 1.9549 -3.5979 16 7 2.3905 1.4063 -4.7096 17 6 2.7323 0.1098 -4.7401 18 6 3.1952 -0.5086 -5.9096 19 6 3.5297 -1.8298 -5.8852 20 6 3.4194 -2.5764 -4.7154 21 6 2.9725 -2.0060 -3.5600 22 6 2.6199 -0.6518 -3.5515 23 1 -0.3634 0.5137 -0.8902 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5140 0.8898 26 1 0.7079 1.1614 3.4842 27 1 2.2491 -1.6318 -1.1523 28 1 1.6940 3.0013 -3.6090 29 1 3.2871 0.0584 -6.8243 30 1 3.8866 -2.3046 -6.7872 31 1 3.6914 -3.6215 -4.7229 32 1 2.8872 -2.5961 -2.6594 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264308710.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:19 Heat of formation + Delta-G solvation = 62.262423 kcal Electronic energy + Delta-G solvation = -16674.308623 eV Core-core repulsion = 14020.525701 eV Total energy + Delta-G solvation = -2653.782921 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.79630 -37.36740 -36.40756 -33.59212 -31.83339 -31.06388 -29.82749 -28.27502 -25.37358 -24.11516 -23.72016 -21.69836 -20.50162 -18.68226 -17.62185 -16.91986 -16.14105 -15.08062 -14.84542 -14.62698 -14.60296 -14.02631 -13.51946 -13.33248 -12.62751 -12.41797 -12.14846 -11.86921 -11.49592 -11.38857 -11.11421 -10.93133 -10.60072 -10.32683 -10.31108 -10.10951 -9.18564 -9.00224 -8.76640 -8.58395 -8.44399 -7.17172 -6.21964 -4.32168 0.83050 1.15053 2.39089 3.19061 3.25992 3.27345 3.36665 3.75904 4.27635 4.59149 4.61790 4.73389 4.90974 5.04335 5.10928 5.13729 5.43960 5.55243 5.75766 6.04966 6.20077 6.34035 6.53828 6.63945 6.72368 6.92196 6.95879 7.03855 7.30366 7.44829 7.54654 7.75839 7.93815 8.08670 8.35637 8.69548 8.95524 9.34868 10.83741 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.034633 B = 0.006015 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.272772 B = 4654.180938 C = 5233.754743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.265 3.735 3 H 0.060 0.940 4 C -0.541 4.541 5 H 0.061 0.939 6 C 0.070 3.930 7 N -0.880 5.880 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.661 5.661 13 C 0.476 3.524 14 N -0.596 5.596 15 C 0.354 3.646 16 N -0.586 5.586 17 C 0.194 3.806 18 C -0.123 4.123 19 C -0.079 4.079 20 C -0.156 4.156 21 C -0.057 4.057 22 C -0.211 4.211 23 H 0.018 0.982 24 H 0.025 0.975 25 H 0.093 0.907 26 H 0.266 0.734 27 H 0.401 0.599 28 H 0.186 0.814 29 H 0.132 0.868 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.065 -4.673 -11.653 12.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.164 3.836 3 H 0.078 0.922 4 C -0.579 4.579 5 H 0.079 0.921 6 C -0.134 4.134 7 N -0.517 5.517 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.285 5.285 13 C 0.219 3.781 14 N -0.325 5.325 15 C 0.063 3.937 16 N -0.309 5.309 17 C 0.068 3.932 18 C -0.143 4.143 19 C -0.100 4.100 20 C -0.176 4.176 21 C -0.078 4.078 22 C -0.220 4.220 23 H 0.037 0.963 24 H 0.044 0.956 25 H 0.111 0.889 26 H 0.076 0.924 27 H 0.237 0.763 28 H 0.203 0.797 29 H 0.150 0.850 30 H 0.142 0.858 31 H 0.141 0.859 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.666 -3.514 -11.346 12.174 hybrid contribution 0.569 -1.644 0.977 1.995 sum 3.235 -5.158 -10.370 12.025 Atomic orbital electron populations 1.22080 0.97998 0.99149 1.01200 1.18981 0.91296 0.94309 0.79001 0.92225 1.21179 1.32936 1.13510 0.90294 0.92119 1.24851 0.94636 0.94922 0.99020 1.69889 1.35445 1.22295 1.24085 0.86425 0.78675 0.79822 0.82063 1.20469 1.20950 1.19847 1.45665 1.62859 1.12339 1.07595 1.18928 0.84608 0.88732 0.85846 1.68115 1.28200 1.06926 1.29309 1.24527 0.87230 0.99523 0.82382 1.68791 1.21934 1.10475 1.29695 1.18713 0.92830 0.89741 0.91951 1.20601 1.01867 0.94748 0.97040 1.20881 0.97247 0.93840 0.97997 1.20707 1.03715 1.00201 0.92930 1.20771 0.95563 0.93008 0.98434 1.19101 1.10747 0.96537 0.95655 0.96326 0.95622 0.88869 0.92419 0.76294 0.79721 0.85043 0.85771 0.85927 0.85832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.27 37.16 0.34 -3.13 16 2 C 0.27 6.43 2.59 -69.09 -0.18 6.26 16 3 H 0.06 1.64 7.57 -51.93 -0.39 1.24 16 4 C -0.54 -13.88 8.73 -34.44 -0.30 -14.18 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 7 N -0.88 -23.96 11.32 55.43 0.63 -23.33 16 8 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 12 N -0.66 -13.53 5.13 -54.62 -0.28 -13.81 16 13 C 0.48 9.53 7.52 -154.97 -1.17 8.36 16 14 N -0.60 -12.32 9.33 -13.54 -0.13 -12.45 16 15 C 0.35 6.37 12.22 -92.20 -1.13 5.24 16 16 N -0.59 -10.56 10.45 -12.66 -0.13 -10.70 16 17 C 0.19 3.37 6.61 -84.86 -0.56 2.81 16 18 C -0.12 -1.73 10.01 -39.56 -0.40 -2.12 16 19 C -0.08 -0.93 9.95 -39.91 -0.40 -1.32 16 20 C -0.16 -1.90 9.96 -39.89 -0.40 -2.29 16 21 C -0.06 -0.83 9.54 -39.61 -0.38 -1.21 16 22 C -0.21 -3.73 5.75 -106.69 -0.61 -4.34 16 23 H 0.02 0.42 8.14 -51.92 -0.42 -0.01 16 24 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 26 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 27 H 0.40 7.24 6.80 -40.82 -0.28 6.97 16 28 H 0.19 2.66 8.06 -52.49 -0.42 2.23 16 29 H 0.13 1.61 8.06 -52.48 -0.42 1.19 16 30 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 32 H 0.12 1.58 6.59 -52.48 -0.35 1.24 16 LS Contribution 276.13 15.07 4.16 4.16 Total: -1.00 -28.99 276.13 -9.45 -38.44 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -3.41 Total: 6.75 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -5.27 Total: -4.21 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: 0.09 Total: -60.28 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -28.99 -9.45 -38.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264308710.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.702 kcal (2) G-P(sol) polarization free energy of solvation -28.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds