Wall clock time and date at job start Mon Mar 30 2020 05:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99972 * 2 1 4 4 H 1.48502 * 109.46702 * 269.99563 * 3 2 1 5 5 H 1.48500 * 109.46851 * 29.99179 * 3 2 1 6 6 H 1.48497 * 109.47209 * 149.99821 * 3 2 1 7 7 C 1.38818 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00059 * 160.26988 * 7 2 1 9 9 N 1.36934 * 119.99775 * 340.27482 * 7 2 1 10 10 C 1.46498 * 119.99945 * 320.53284 * 9 7 2 11 11 C 1.53003 * 109.47333 * 270.00149 * 10 9 7 12 12 H 1.08997 * 113.12039 * 42.62833 * 11 10 9 13 13 C 1.52886 * 113.99036 * 175.00015 * 11 10 9 14 14 C 1.50761 * 89.76421 * 113.94629 * 13 11 10 15 15 C 1.38237 * 149.34309 * 180.33983 * 14 13 11 16 16 C 1.38178 * 120.12627 * 179.97438 * 15 14 13 17 17 C 1.38241 * 119.74438 * 359.65067 * 16 15 14 18 18 C 1.37974 * 120.18144 * 0.14193 * 17 16 15 19 19 C 1.38362 * 90.24520 * 359.97438 * 14 13 11 20 20 C 1.46498 * 119.99878 * 140.53917 * 9 7 2 21 21 C 1.53001 * 117.49923 * 3.32611 * 20 9 7 22 22 C 1.53000 * 60.00042 * 252.50891 * 21 20 9 23 23 H 0.96992 * 120.00397 * 355.02667 * 1 2 3 24 24 H 1.09004 * 109.46887 * 150.00298 * 10 9 7 25 25 H 1.09000 * 109.47285 * 30.00460 * 10 9 7 26 26 H 1.09002 * 113.16705 * 358.72861 * 13 11 10 27 27 H 1.08993 * 113.22166 * 229.18005 * 13 11 10 28 28 H 1.07997 * 119.93387 * 359.91347 * 15 14 13 29 29 H 1.07998 * 120.12325 * 179.81697 * 16 15 14 30 30 H 1.08004 * 119.90502 * 180.16540 * 17 16 15 31 31 H 1.07993 * 119.83985 * 180.02562 * 18 17 16 32 32 H 1.09004 * 115.54821 * 149.03491 * 20 9 7 33 33 H 1.08993 * 117.49842 * 359.97438 * 21 20 9 34 34 H 1.09003 * 117.50001 * 145.02723 * 21 20 9 35 35 H 1.09002 * 117.50442 * 252.50901 * 22 21 20 36 36 H 1.09000 * 117.51736 * 107.47532 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0428 -1.2297 -0.3152 9 7 1.3859 -2.3531 0.4013 10 6 0.4643 -2.3281 1.5398 11 6 1.2397 -2.6030 2.8298 12 1 2.1917 -2.0745 2.8778 13 6 0.3967 -2.4817 4.0996 14 6 0.5639 -3.9600 4.3442 15 6 0.3040 -5.0736 5.1208 16 6 0.8122 -6.3062 4.7577 17 6 1.5754 -6.4227 3.6110 18 6 1.8319 -5.3126 2.8328 19 6 1.3263 -4.0700 3.1948 20 6 1.6396 -3.6093 -0.3083 21 6 2.6707 -3.5865 -1.4386 22 6 1.1804 -3.7032 -1.7648 23 1 -0.4850 0.8368 0.0728 24 1 -0.3001 -3.0935 1.4053 25 1 -0.0095 -1.3485 1.6023 26 1 -0.6360 -2.1939 3.9028 27 1 0.8629 -1.8646 4.8676 28 1 -0.2965 -4.9799 6.0135 29 1 0.6116 -7.1757 5.3661 30 1 1.9717 -7.3853 3.3234 31 1 2.4285 -5.4100 1.9379 32 1 1.5772 -4.5128 0.2983 33 1 3.1599 -2.6367 -1.6544 34 1 3.2869 -4.4751 -1.5757 35 1 0.8162 -4.6685 -2.1165 36 1 0.6892 -2.8304 -2.1948 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287391282.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:07 Heat of formation + Delta-G solvation = 107.797080 kcal Electronic energy + Delta-G solvation = -17324.406977 eV Core-core repulsion = 14776.138930 eV Total energy + Delta-G solvation = -2548.268047 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.09698 -36.93547 -35.30372 -33.19380 -30.77361 -30.19001 -27.46567 -25.74418 -23.89599 -22.49285 -21.34561 -20.92692 -19.70679 -19.17731 -16.46717 -16.17424 -15.50329 -14.92394 -14.53974 -14.18811 -13.98459 -13.82156 -12.80151 -12.71149 -12.55373 -11.93673 -11.82598 -11.68473 -11.40282 -10.87649 -10.82741 -10.66161 -10.62160 -10.16279 -10.13251 -9.84242 -9.58085 -9.55803 -9.21255 -8.47913 -8.46453 -8.18218 -6.51712 -5.78711 -3.45539 1.70118 1.74290 3.33013 3.41328 3.44321 4.12196 4.42993 4.63516 4.93680 4.97163 5.12207 5.26815 5.32466 5.34375 5.57042 5.83704 5.87835 5.97007 6.03738 6.08016 6.16898 6.22949 6.32341 6.38319 6.52967 6.56835 6.67163 6.70974 6.78173 6.82189 7.01026 7.10144 7.25258 7.27644 7.41168 7.59121 7.79301 8.49467 9.15154 9.76064 10.35838 11.15602 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.024163 B = 0.007793 C = 0.006402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.501235 B = 3592.088006 C = 4372.347510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.015 3.985 3 Si 0.895 3.105 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.259 4.259 8 H 0.063 0.937 9 N -0.548 5.548 10 C 0.170 3.830 11 C -0.062 4.062 12 H 0.098 0.902 13 C -0.069 4.069 14 C -0.143 4.143 15 C -0.096 4.096 16 C -0.134 4.134 17 C -0.124 4.124 18 C -0.105 4.105 19 C -0.095 4.095 20 C 0.122 3.878 21 C -0.197 4.197 22 C -0.223 4.223 23 H 0.255 0.745 24 H 0.030 0.970 25 H 0.102 0.898 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.111 0.889 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.110 -8.388 7.170 11.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.186 4.186 3 Si 0.723 3.277 4 H -0.212 1.212 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.389 4.389 8 H 0.081 0.919 9 N -0.264 5.264 10 C 0.044 3.956 11 C -0.083 4.083 12 H 0.116 0.884 13 C -0.107 4.107 14 C -0.143 4.143 15 C -0.114 4.114 16 C -0.152 4.152 17 C -0.142 4.142 18 C -0.123 4.123 19 C -0.095 4.095 20 C 0.013 3.987 21 C -0.235 4.235 22 C -0.264 4.264 23 H 0.065 0.935 24 H 0.049 0.951 25 H 0.119 0.881 26 H 0.104 0.896 27 H 0.097 0.903 28 H 0.129 0.871 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.133 0.867 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.975 -8.231 7.116 10.924 hybrid contribution 0.442 0.660 -0.068 0.797 sum 1.417 -7.571 7.048 10.441 Atomic orbital electron populations 1.70049 1.05519 1.26213 1.50747 1.25237 0.94990 0.98779 0.99558 0.86449 0.79601 0.83715 0.77888 1.21223 1.21415 1.20233 1.19024 0.93322 0.85088 1.41444 0.91919 1.43312 1.50777 1.03046 1.29295 1.20734 0.90109 1.02461 0.82329 1.22326 1.00589 0.88588 0.96751 0.88367 1.21660 1.01581 0.89843 0.97587 1.21952 0.99213 0.96639 0.96524 1.20105 1.00751 0.91190 0.99398 1.20854 0.99857 0.96700 0.97755 1.20879 0.99805 0.97949 0.95582 1.20657 1.00278 0.91581 0.99766 1.22812 0.95406 0.95797 0.95529 1.21291 1.00350 0.90742 0.86309 1.23015 0.92163 1.01721 1.06605 1.23347 0.96819 1.00876 1.05331 0.93504 0.95131 0.88070 0.89627 0.90289 0.87099 0.86380 0.86510 0.86702 0.89536 0.88500 0.90936 0.91395 0.89005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.52 11.50 55.49 0.64 -23.88 16 2 C 0.02 0.40 4.98 -17.43 -0.09 0.31 16 3 Si 0.89 20.91 29.60 -169.99 -5.03 15.88 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 7 C -0.26 -6.80 8.47 -15.06 -0.13 -6.92 16 8 H 0.06 1.66 6.74 -52.49 -0.35 1.31 16 9 N -0.55 -13.26 2.75 -165.66 -0.46 -13.71 16 10 C 0.17 3.85 5.13 -4.04 -0.02 3.83 16 11 C -0.06 -1.21 4.28 -91.47 -0.39 -1.60 16 12 H 0.10 2.03 8.14 -51.93 -0.42 1.61 16 13 C -0.07 -1.15 7.63 -31.55 -0.24 -1.39 16 14 C -0.14 -2.40 7.60 -104.55 -0.79 -3.19 16 15 C -0.10 -1.41 10.04 -39.60 -0.40 -1.81 16 16 C -0.13 -1.81 10.06 -39.60 -0.40 -2.21 16 17 C -0.12 -1.77 10.03 -39.68 -0.40 -2.17 16 18 C -0.10 -1.75 9.50 -39.41 -0.37 -2.12 16 19 C -0.10 -1.73 6.75 -107.59 -0.73 -2.46 16 20 C 0.12 2.64 6.56 -67.93 -0.45 2.19 16 21 C -0.20 -3.96 9.80 -26.73 -0.26 -4.22 16 22 C -0.22 -4.67 10.36 -26.73 -0.28 -4.95 16 23 H 0.25 6.84 8.32 -40.82 -0.34 6.50 16 24 H 0.03 0.69 7.92 -51.93 -0.41 0.28 16 25 H 0.10 2.55 5.59 -51.93 -0.29 2.26 16 26 H 0.09 1.38 7.99 -51.93 -0.41 0.96 16 27 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 29 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 30 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 31 H 0.11 1.86 6.99 -52.49 -0.37 1.50 16 32 H 0.09 1.74 6.44 -51.93 -0.33 1.41 16 33 H 0.10 2.11 6.46 -51.93 -0.34 1.77 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.09 2.19 8.14 -51.93 -0.42 1.77 16 LS Contribution 297.69 15.07 4.49 4.49 Total: -1.00 -27.82 297.69 -10.33 -38.15 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -5.02 Total: 5.79 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: -4.94 Total: -26.70 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.18 Total: -37.60 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.82 -10.33 -38.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287391282.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.949 kcal (2) G-P(sol) polarization free energy of solvation -27.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds