Wall clock time and date at job start Mon Mar 30 2020 05:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99972 * 2 1 4 4 H 1.48502 * 109.46702 * 269.99563 * 3 2 1 5 5 H 1.48500 * 109.46851 * 29.99179 * 3 2 1 6 6 H 1.48497 * 109.47209 * 149.99821 * 3 2 1 7 7 C 1.38818 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00059 * 160.26988 * 7 2 1 9 9 N 1.36934 * 119.99775 * 340.27482 * 7 2 1 10 10 C 1.46498 * 119.99945 * 320.53284 * 9 7 2 11 11 C 1.53003 * 109.47333 * 270.00149 * 10 9 7 12 12 H 1.08997 * 113.12039 * 42.62833 * 11 10 9 13 13 C 1.52886 * 113.99036 * 175.00015 * 11 10 9 14 14 C 1.50761 * 89.76421 * 113.94629 * 13 11 10 15 15 C 1.38237 * 149.34309 * 180.33983 * 14 13 11 16 16 C 1.38178 * 120.12627 * 179.97438 * 15 14 13 17 17 C 1.38241 * 119.74438 * 359.65067 * 16 15 14 18 18 C 1.37974 * 120.18144 * 0.14193 * 17 16 15 19 19 C 1.38362 * 90.24520 * 359.97438 * 14 13 11 20 20 C 1.46498 * 119.99878 * 140.53917 * 9 7 2 21 21 C 1.53001 * 117.49923 * 3.32611 * 20 9 7 22 22 C 1.53000 * 60.00042 * 252.50891 * 21 20 9 23 23 H 0.96992 * 120.00397 * 355.02667 * 1 2 3 24 24 H 1.09004 * 109.46887 * 150.00298 * 10 9 7 25 25 H 1.09000 * 109.47285 * 30.00460 * 10 9 7 26 26 H 1.09002 * 113.16705 * 358.72861 * 13 11 10 27 27 H 1.08993 * 113.22166 * 229.18005 * 13 11 10 28 28 H 1.07997 * 119.93387 * 359.91347 * 15 14 13 29 29 H 1.07998 * 120.12325 * 179.81697 * 16 15 14 30 30 H 1.08004 * 119.90502 * 180.16540 * 17 16 15 31 31 H 1.07993 * 119.83985 * 180.02562 * 18 17 16 32 32 H 1.09004 * 115.54821 * 149.03491 * 20 9 7 33 33 H 1.08993 * 117.49842 * 359.97438 * 21 20 9 34 34 H 1.09003 * 117.50001 * 145.02723 * 21 20 9 35 35 H 1.09002 * 117.50442 * 252.50901 * 22 21 20 36 36 H 1.09000 * 117.51736 * 107.47532 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0428 -1.2297 -0.3152 9 7 1.3859 -2.3531 0.4013 10 6 0.4643 -2.3281 1.5398 11 6 1.2397 -2.6030 2.8298 12 1 2.1917 -2.0745 2.8778 13 6 0.3967 -2.4817 4.0996 14 6 0.5639 -3.9600 4.3442 15 6 0.3040 -5.0736 5.1208 16 6 0.8122 -6.3062 4.7577 17 6 1.5754 -6.4227 3.6110 18 6 1.8319 -5.3126 2.8328 19 6 1.3263 -4.0700 3.1948 20 6 1.6396 -3.6093 -0.3083 21 6 2.6707 -3.5865 -1.4386 22 6 1.1804 -3.7032 -1.7648 23 1 -0.4850 0.8368 0.0728 24 1 -0.3001 -3.0935 1.4053 25 1 -0.0095 -1.3485 1.6023 26 1 -0.6360 -2.1939 3.9028 27 1 0.8629 -1.8646 4.8676 28 1 -0.2965 -4.9799 6.0135 29 1 0.6116 -7.1757 5.3661 30 1 1.9717 -7.3853 3.3234 31 1 2.4285 -5.4100 1.9379 32 1 1.5772 -4.5128 0.2983 33 1 3.1599 -2.6367 -1.6544 34 1 3.2869 -4.4751 -1.5757 35 1 0.8162 -4.6685 -2.1165 36 1 0.6892 -2.8304 -2.1948 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287391282.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:07 Heat of formation + Delta-G solvation = 95.589052 kcal Electronic energy + Delta-G solvation = -17324.936357 eV Core-core repulsion = 14776.138930 eV Total energy + Delta-G solvation = -2548.797427 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.39038 -38.66299 -36.63567 -35.02408 -32.53599 -31.50361 -28.97096 -27.33456 -25.62443 -23.93253 -23.00675 -22.26883 -21.46701 -20.53946 -18.30931 -17.45840 -17.24331 -16.59521 -16.00208 -15.67090 -15.56991 -15.28868 -14.45875 -14.04946 -13.78483 -13.63865 -13.43896 -13.18395 -12.93350 -12.66214 -12.41966 -12.40208 -12.26614 -11.89884 -11.85607 -11.35599 -11.28559 -11.08396 -10.89280 -10.47741 -9.65743 -9.42043 -8.47933 -7.77364 -5.49949 0.51350 0.55358 1.44537 1.47615 1.56856 2.49426 2.93184 3.15245 3.33866 3.40749 3.49771 3.66829 4.00314 4.21908 4.29572 4.36790 4.37075 4.50517 4.56853 4.62775 4.77324 4.84449 4.88981 4.91492 5.03150 5.06505 5.18525 5.27494 5.31973 5.43118 5.53345 5.57437 5.65416 5.67049 5.75007 6.01065 6.21698 6.47815 7.16503 7.83745 8.38530 9.11888 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.024163 B = 0.007793 C = 0.006402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.501235 B = 3592.088006 C = 4372.347510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.031 4.031 3 Si 0.954 3.046 4 H -0.287 1.287 5 H -0.288 1.288 6 H -0.272 1.272 7 C -0.262 4.262 8 H 0.056 0.944 9 N -0.564 5.564 10 C 0.180 3.820 11 C -0.065 4.065 12 H 0.076 0.924 13 C -0.062 4.062 14 C -0.152 4.152 15 C -0.100 4.100 16 C -0.124 4.124 17 C -0.122 4.122 18 C -0.120 4.120 19 C -0.128 4.128 20 C 0.104 3.896 21 C -0.180 4.180 22 C -0.221 4.221 23 H 0.252 0.748 24 H 0.020 0.980 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.138 0.862 29 H 0.157 0.843 30 H 0.148 0.852 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.679 -10.611 8.530 13.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.229 4.229 3 Si 0.781 3.219 4 H -0.214 1.214 5 H -0.214 1.214 6 H -0.196 1.196 7 C -0.393 4.393 8 H 0.074 0.926 9 N -0.281 5.281 10 C 0.054 3.946 11 C -0.085 4.085 12 H 0.094 0.906 13 C -0.099 4.099 14 C -0.152 4.152 15 C -0.118 4.118 16 C -0.141 4.141 17 C -0.140 4.140 18 C -0.138 4.138 19 C -0.128 4.128 20 C -0.004 4.004 21 C -0.218 4.218 22 C -0.262 4.262 23 H 0.061 0.939 24 H 0.038 0.962 25 H 0.090 0.910 26 H 0.103 0.897 27 H 0.112 0.888 28 H 0.156 0.844 29 H 0.175 0.825 30 H 0.165 0.835 31 H 0.130 0.870 32 H 0.122 0.878 33 H 0.094 0.906 34 H 0.128 0.872 35 H 0.117 0.883 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.556 -10.469 8.480 13.562 hybrid contribution 0.269 1.217 -0.485 1.338 sum 1.825 -9.252 7.995 12.363 Atomic orbital electron populations 1.70170 1.06719 1.26551 1.52295 1.25873 0.95627 1.01414 0.99942 0.85526 0.78567 0.80239 0.77548 1.21355 1.21373 1.19644 1.19165 0.93152 0.86227 1.40712 0.92601 1.43483 1.50851 1.03437 1.30318 1.20504 0.90080 1.00338 0.83715 1.21967 0.99600 0.90571 0.96371 0.90572 1.21547 1.01053 0.90899 0.96413 1.22014 0.99530 0.96855 0.96762 1.20501 1.00627 0.90756 0.99886 1.21350 0.97956 0.97452 0.97362 1.21259 0.99211 0.98303 0.95244 1.20831 1.00674 0.91857 1.00409 1.22660 0.97857 0.95330 0.96932 1.21518 1.01776 0.90365 0.86748 1.23021 0.91836 1.02295 1.04698 1.23261 0.97520 1.00851 1.04556 0.93858 0.96157 0.91048 0.89680 0.88755 0.84405 0.82549 0.83462 0.87002 0.87816 0.90590 0.87201 0.88310 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.72 11.50 21.65 0.25 -52.47 16 2 C -0.03 -1.68 4.98 84.86 0.42 -1.26 16 3 Si 0.95 44.13 29.60 68.60 2.03 46.16 16 4 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 5 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 7 C -0.26 -14.20 8.47 84.04 0.71 -13.49 16 8 H 0.06 3.05 6.74 -2.91 -0.02 3.03 16 9 N -0.56 -28.16 2.75 -678.02 -1.86 -30.02 16 10 C 0.18 8.50 5.13 86.38 0.44 8.94 16 11 C -0.06 -2.60 4.28 -11.35 -0.05 -2.65 16 12 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 13 C -0.06 -2.05 7.63 27.47 0.21 -1.85 16 14 C -0.15 -4.88 7.60 -19.82 -0.15 -5.03 16 15 C -0.10 -2.60 10.04 22.26 0.22 -2.37 16 16 C -0.12 -2.81 10.06 22.26 0.22 -2.59 16 17 C -0.12 -3.07 10.03 22.21 0.22 -2.85 16 18 C -0.12 -3.81 9.50 22.38 0.21 -3.60 16 19 C -0.13 -4.60 6.75 -21.79 -0.15 -4.74 16 20 C 0.10 4.52 6.56 44.99 0.30 4.81 16 21 C -0.18 -7.10 9.80 30.59 0.30 -6.80 16 22 C -0.22 -9.23 10.36 30.59 0.32 -8.91 16 23 H 0.25 14.03 8.32 -92.71 -0.77 13.26 16 24 H 0.02 0.96 7.92 -2.38 -0.02 0.94 16 25 H 0.07 3.81 5.59 -2.39 -0.01 3.79 16 26 H 0.08 2.79 7.99 -2.39 -0.02 2.77 16 27 H 0.09 2.77 8.14 -2.39 -0.02 2.76 16 28 H 0.14 2.81 8.06 -2.91 -0.02 2.78 16 29 H 0.16 2.39 8.06 -2.91 -0.02 2.36 16 30 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 31 H 0.11 3.51 6.99 -2.91 -0.02 3.49 16 32 H 0.10 4.11 6.44 -2.38 -0.02 4.09 16 33 H 0.08 3.32 6.46 -2.39 -0.02 3.30 16 34 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 35 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 36 H 0.05 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -61.70 297.69 4.71 -56.99 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 1.06 Total: 21.72 kcal Atomic # 6 Polarization: -45.61 SS G_CDS: 3.24 Total: -42.37 kcal Atomic # 7 Polarization: -80.88 SS G_CDS: -1.61 Total: -82.49 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -61.70 4.71 -56.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287391282.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.575 kcal (2) G-P(sol) polarization free energy of solvation -61.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds