Wall clock time and date at job start Mon Mar 30 2020 05:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99814 * 2 1 4 4 H 1.48504 * 109.47267 * 240.00328 * 3 2 1 5 5 H 1.48497 * 109.47444 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47044 * 120.00503 * 3 2 1 7 7 C 1.38812 * 120.00319 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00268 * 161.53060 * 7 2 1 9 9 N 1.36936 * 119.99540 * 341.53670 * 7 2 1 10 10 C 1.46497 * 120.00365 * 320.01360 * 9 7 2 11 11 C 1.53001 * 109.47233 * 270.00258 * 10 9 7 12 12 H 1.08997 * 112.83134 * 316.11466 * 11 10 9 13 13 C 1.53519 * 113.58761 * 184.99399 * 11 10 9 14 14 C 1.51607 * 87.25565 * 245.41069 * 13 11 10 15 15 C 1.38369 * 147.53830 * 180.02562 * 14 13 11 16 16 C 1.38097 * 120.33138 * 180.02562 * 15 14 13 17 17 C 1.38251 * 119.95158 * 359.97438 * 16 15 14 18 18 C 1.38095 * 119.95370 * 0.02562 * 17 16 15 19 19 C 1.38370 * 120.32849 * 0.02562 * 18 17 16 20 20 C 1.46503 * 119.99895 * 140.01742 * 9 7 2 21 21 C 1.52997 * 117.50053 * 3.27809 * 20 9 7 22 22 C 1.52997 * 60.00387 * 252.51514 * 21 20 9 23 23 H 0.97004 * 119.99915 * 355.00448 * 1 2 3 24 24 H 1.09000 * 109.47749 * 149.99739 * 10 9 7 25 25 H 1.09000 * 109.46786 * 30.00174 * 10 9 7 26 26 H 1.09004 * 113.58708 * 0.02562 * 13 11 10 27 27 H 1.09003 * 113.58474 * 130.81603 * 13 11 10 28 28 H 1.08004 * 119.83567 * 0.02562 * 15 14 13 29 29 H 1.07993 * 120.02493 * 179.97438 * 16 15 14 30 30 H 1.07999 * 120.01950 * 179.97438 * 17 16 15 31 31 H 1.07998 * 119.83195 * 179.97438 * 18 17 16 32 32 H 1.09004 * 115.55002 * 148.99247 * 20 9 7 33 33 H 1.08998 * 117.49687 * 0.02562 * 21 20 9 34 34 H 1.09000 * 117.49874 * 145.01885 * 21 20 9 35 35 H 1.09004 * 117.49354 * 252.51061 * 22 21 20 36 36 H 1.08998 * 117.49872 * 107.48761 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0486 -1.2261 -0.2968 9 7 1.3785 -2.3576 0.3745 10 6 0.4439 -2.3486 1.5027 11 6 1.2038 -2.6461 2.7969 12 1 1.9164 -3.4640 2.6904 13 6 0.2942 -2.7798 4.0264 14 6 0.9651 -1.5326 4.5676 15 6 1.0572 -0.6079 5.5927 16 6 1.9612 0.4331 5.5138 17 6 2.7799 0.5538 4.4063 18 6 2.6921 -0.3664 3.3803 19 6 1.7873 -1.4106 3.4539 20 6 1.6372 -3.6031 -0.3523 21 6 2.6803 -3.5646 -1.4709 22 6 1.1934 -3.6726 -1.8150 23 1 -0.4850 0.8369 0.0732 24 1 -0.3209 -3.1095 1.3472 25 1 -0.0281 -1.3688 1.5755 26 1 -0.7640 -2.6442 3.8029 27 1 0.4909 -3.6731 4.6193 28 1 0.4189 -0.7006 6.4590 29 1 2.0286 1.1523 6.3166 30 1 3.4870 1.3677 4.3432 31 1 3.3322 -0.2699 2.5159 32 1 1.5663 -4.5160 0.2391 33 1 3.1744 -2.6128 -1.6658 34 1 3.2961 -4.4522 -1.6155 35 1 0.8310 -4.6314 -2.1859 36 1 0.7091 -2.7917 -2.2363 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287391288.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:10 Heat of formation + Delta-G solvation = 108.081806 kcal Electronic energy + Delta-G solvation = -17597.701415 eV Core-core repulsion = 15049.445715 eV Total energy + Delta-G solvation = -2548.255700 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.80317 -36.92620 -35.09721 -33.13758 -30.61675 -30.02878 -27.39213 -25.55143 -23.90452 -22.36018 -21.32711 -20.71077 -19.77967 -18.97932 -16.39512 -16.09162 -15.32159 -14.86303 -14.45358 -14.15115 -13.78122 -13.71253 -12.75168 -12.49219 -12.41733 -11.97741 -11.75807 -11.52305 -11.17094 -10.90592 -10.76144 -10.66743 -10.54315 -10.19222 -10.08052 -9.69474 -9.58027 -9.48901 -9.18754 -8.43230 -8.20500 -7.95286 -6.48511 -5.75149 -3.42339 1.92254 2.03747 3.35685 3.41915 3.43440 4.37926 4.45367 4.80066 4.97154 5.08827 5.14431 5.37340 5.48536 5.53637 5.68237 5.83475 5.94751 6.03371 6.15357 6.16280 6.28338 6.32690 6.40812 6.52594 6.58015 6.61709 6.68410 6.80055 6.94869 6.95980 7.08676 7.11831 7.27077 7.47501 7.64619 7.70064 7.81482 8.53141 9.18460 9.79487 10.37980 11.19838 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.019484 B = 0.010552 C = 0.007873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.707316 B = 2652.943692 C = 3555.615806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.023 3.977 3 Si 0.884 3.116 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.275 1.275 7 C -0.255 4.255 8 H 0.060 0.940 9 N -0.548 5.548 10 C 0.164 3.836 11 C -0.062 4.062 12 H 0.081 0.919 13 C -0.071 4.071 14 C -0.149 4.149 15 C -0.104 4.104 16 C -0.136 4.136 17 C -0.126 4.126 18 C -0.083 4.083 19 C -0.073 4.073 20 C 0.120 3.880 21 C -0.196 4.196 22 C -0.221 4.221 23 H 0.254 0.746 24 H 0.034 0.966 25 H 0.100 0.900 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.121 0.879 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.990 -3.782 7.410 8.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.178 4.178 3 Si 0.713 3.287 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.201 1.201 7 C -0.385 4.385 8 H 0.078 0.922 9 N -0.264 5.264 10 C 0.037 3.963 11 C -0.082 4.082 12 H 0.099 0.901 13 C -0.108 4.108 14 C -0.149 4.149 15 C -0.122 4.122 16 C -0.154 4.154 17 C -0.144 4.144 18 C -0.101 4.101 19 C -0.073 4.073 20 C 0.011 3.989 21 C -0.234 4.234 22 C -0.262 4.262 23 H 0.064 0.936 24 H 0.052 0.948 25 H 0.118 0.882 26 H 0.104 0.896 27 H 0.096 0.904 28 H 0.125 0.875 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.139 0.861 32 H 0.103 0.897 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.855 -3.595 7.357 8.396 hybrid contribution 0.490 1.144 -0.063 1.246 sum 2.345 -2.451 7.294 8.044 Atomic orbital electron populations 1.69995 1.05516 1.26159 1.50790 1.25149 0.94877 0.98436 0.99292 0.86697 0.79575 0.83996 0.78479 1.20801 1.21649 1.20064 1.18861 0.92599 0.84750 1.42241 0.92228 1.43300 1.49813 1.03568 1.29755 1.20824 0.90129 1.02807 0.82506 1.22365 0.96221 0.93264 0.96375 0.90098 1.21903 0.99742 0.93576 0.95603 1.22362 0.99471 0.97676 0.95432 1.20123 0.99393 0.94752 0.97939 1.20777 0.97649 0.98446 0.98516 1.20925 1.00074 0.99055 0.94345 1.20484 0.98453 0.93202 0.97961 1.22174 0.94009 0.95941 0.95150 1.21244 1.00506 0.90797 0.86319 1.23002 0.92103 1.01729 1.06574 1.23340 0.96976 1.00928 1.04958 0.93558 0.94765 0.88235 0.89604 0.90366 0.87526 0.86731 0.86742 0.86108 0.89671 0.88546 0.90936 0.91383 0.89037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.95 11.46 55.49 0.64 -24.32 16 2 C 0.02 0.63 5.01 -17.43 -0.09 0.54 16 3 Si 0.88 21.34 29.60 -169.99 -5.03 16.30 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.27 -6.41 6.99 56.52 0.40 -6.02 16 7 C -0.25 -6.63 8.46 -15.06 -0.13 -6.76 16 8 H 0.06 1.58 6.76 -52.49 -0.35 1.22 16 9 N -0.55 -13.09 2.74 -165.66 -0.45 -13.55 16 10 C 0.16 3.68 5.09 -4.04 -0.02 3.66 16 11 C -0.06 -1.20 4.15 -91.07 -0.38 -1.58 16 12 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 13 C -0.07 -1.16 7.86 -27.19 -0.21 -1.37 16 14 C -0.15 -2.75 7.49 -103.88 -0.78 -3.52 16 15 C -0.10 -1.75 10.03 -39.58 -0.40 -2.14 16 16 C -0.14 -2.23 10.04 -39.63 -0.40 -2.63 16 17 C -0.13 -2.28 10.04 -39.63 -0.40 -2.67 16 18 C -0.08 -1.72 10.03 -39.59 -0.40 -2.11 16 19 C -0.07 -1.49 6.91 -103.87 -0.72 -2.21 16 20 C 0.12 2.53 6.56 -67.93 -0.45 2.09 16 21 C -0.20 -3.86 9.80 -26.73 -0.26 -4.12 16 22 C -0.22 -4.51 10.36 -26.73 -0.28 -4.79 16 23 H 0.25 7.07 8.32 -40.82 -0.34 6.73 16 24 H 0.03 0.73 8.07 -51.93 -0.42 0.31 16 25 H 0.10 2.59 5.45 -51.93 -0.28 2.31 16 26 H 0.09 1.35 8.00 -51.93 -0.42 0.93 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 29 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.11 1.82 8.06 -52.49 -0.42 1.39 16 31 H 0.12 2.64 7.94 -52.49 -0.42 2.22 16 32 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 33 H 0.10 2.08 6.47 -51.93 -0.34 1.75 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.09 2.15 8.14 -51.93 -0.42 1.73 16 LS Contribution 300.87 15.07 4.53 4.53 Total: -1.00 -28.13 300.87 -10.38 -38.51 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -5.17 Total: 6.13 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: -4.90 Total: -27.62 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.18 Total: -37.86 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.13 -10.38 -38.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287391288.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.596 kcal (2) G-P(sol) polarization free energy of solvation -28.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds