Wall clock time and date at job start Mon Mar 30 2020 05:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99814 * 2 1 4 4 H 1.48504 * 109.47267 * 240.00328 * 3 2 1 5 5 H 1.48497 * 109.47444 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47044 * 120.00503 * 3 2 1 7 7 C 1.38812 * 120.00319 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00268 * 161.53060 * 7 2 1 9 9 N 1.36936 * 119.99540 * 341.53670 * 7 2 1 10 10 C 1.46497 * 120.00365 * 320.01360 * 9 7 2 11 11 C 1.53001 * 109.47233 * 270.00258 * 10 9 7 12 12 H 1.08997 * 112.83134 * 316.11466 * 11 10 9 13 13 C 1.53519 * 113.58761 * 184.99399 * 11 10 9 14 14 C 1.51607 * 87.25565 * 245.41069 * 13 11 10 15 15 C 1.38369 * 147.53830 * 180.02562 * 14 13 11 16 16 C 1.38097 * 120.33138 * 180.02562 * 15 14 13 17 17 C 1.38251 * 119.95158 * 359.97438 * 16 15 14 18 18 C 1.38095 * 119.95370 * 0.02562 * 17 16 15 19 19 C 1.38370 * 120.32849 * 0.02562 * 18 17 16 20 20 C 1.46503 * 119.99895 * 140.01742 * 9 7 2 21 21 C 1.52997 * 117.50053 * 3.27809 * 20 9 7 22 22 C 1.52997 * 60.00387 * 252.51514 * 21 20 9 23 23 H 0.97004 * 119.99915 * 355.00448 * 1 2 3 24 24 H 1.09000 * 109.47749 * 149.99739 * 10 9 7 25 25 H 1.09000 * 109.46786 * 30.00174 * 10 9 7 26 26 H 1.09004 * 113.58708 * 0.02562 * 13 11 10 27 27 H 1.09003 * 113.58474 * 130.81603 * 13 11 10 28 28 H 1.08004 * 119.83567 * 0.02562 * 15 14 13 29 29 H 1.07993 * 120.02493 * 179.97438 * 16 15 14 30 30 H 1.07999 * 120.01950 * 179.97438 * 17 16 15 31 31 H 1.07998 * 119.83195 * 179.97438 * 18 17 16 32 32 H 1.09004 * 115.55002 * 148.99247 * 20 9 7 33 33 H 1.08998 * 117.49687 * 0.02562 * 21 20 9 34 34 H 1.09000 * 117.49874 * 145.01885 * 21 20 9 35 35 H 1.09004 * 117.49354 * 252.51061 * 22 21 20 36 36 H 1.08998 * 117.49872 * 107.48761 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0486 -1.2261 -0.2968 9 7 1.3785 -2.3576 0.3745 10 6 0.4439 -2.3486 1.5027 11 6 1.2038 -2.6461 2.7969 12 1 1.9164 -3.4640 2.6904 13 6 0.2942 -2.7798 4.0264 14 6 0.9651 -1.5326 4.5676 15 6 1.0572 -0.6079 5.5927 16 6 1.9612 0.4331 5.5138 17 6 2.7799 0.5538 4.4063 18 6 2.6921 -0.3664 3.3803 19 6 1.7873 -1.4106 3.4539 20 6 1.6372 -3.6031 -0.3523 21 6 2.6803 -3.5646 -1.4709 22 6 1.1934 -3.6726 -1.8150 23 1 -0.4850 0.8369 0.0732 24 1 -0.3209 -3.1095 1.3472 25 1 -0.0281 -1.3688 1.5755 26 1 -0.7640 -2.6442 3.8029 27 1 0.4909 -3.6731 4.6193 28 1 0.4189 -0.7006 6.4590 29 1 2.0286 1.1523 6.3166 30 1 3.4870 1.3677 4.3432 31 1 3.3322 -0.2699 2.5159 32 1 1.5663 -4.5160 0.2391 33 1 3.1744 -2.6128 -1.6658 34 1 3.2961 -4.4522 -1.6155 35 1 0.8310 -4.6314 -2.1859 36 1 0.7091 -2.7917 -2.2363 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287391288.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:10 Heat of formation + Delta-G solvation = 95.540555 kcal Electronic energy + Delta-G solvation = -17598.245244 eV Core-core repulsion = 15049.445715 eV Total energy + Delta-G solvation = -2548.799530 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.21753 -38.63832 -36.53657 -34.97802 -32.46732 -31.46016 -29.01061 -27.16635 -25.64870 -23.88634 -22.95554 -22.18940 -21.48763 -20.46324 -18.29267 -17.50995 -17.07352 -16.59832 -16.00713 -15.77233 -15.38846 -15.20104 -14.47141 -13.99968 -13.84174 -13.57922 -13.49654 -13.04344 -12.85971 -12.62556 -12.56164 -12.29546 -12.17444 -12.04407 -11.71964 -11.38438 -11.30168 -11.02261 -10.79441 -10.44030 -9.61289 -9.35866 -8.44238 -7.75319 -5.46599 0.53257 0.62967 1.38749 1.42142 1.45928 2.47624 2.97183 3.19741 3.42147 3.44182 3.51056 3.73216 4.02896 4.24274 4.34198 4.35232 4.43189 4.55319 4.58773 4.71229 4.81818 4.88751 4.95641 4.96637 5.02993 5.10167 5.14810 5.32680 5.40627 5.42727 5.57494 5.59582 5.68431 5.71306 5.85856 6.07323 6.26481 6.49864 7.20463 7.88811 8.40183 9.13114 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.019484 B = 0.010552 C = 0.007873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.707316 B = 2652.943692 C = 3555.615806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.017 4.017 3 Si 0.924 3.076 4 H -0.280 1.280 5 H -0.298 1.298 6 H -0.266 1.266 7 C -0.243 4.243 8 H 0.049 0.951 9 N -0.565 5.565 10 C 0.168 3.832 11 C -0.061 4.061 12 H 0.084 0.916 13 C -0.053 4.053 14 C -0.155 4.155 15 C -0.106 4.106 16 C -0.128 4.128 17 C -0.137 4.137 18 C -0.111 4.111 19 C -0.113 4.113 20 C 0.103 3.897 21 C -0.184 4.184 22 C -0.217 4.217 23 H 0.247 0.753 24 H 0.041 0.959 25 H 0.063 0.937 26 H 0.092 0.908 27 H 0.111 0.889 28 H 0.141 0.859 29 H 0.152 0.848 30 H 0.131 0.869 31 H 0.093 0.907 32 H 0.115 0.885 33 H 0.070 0.930 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.153 -4.928 9.270 10.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.215 4.215 3 Si 0.753 3.247 4 H -0.206 1.206 5 H -0.224 1.224 6 H -0.192 1.192 7 C -0.373 4.373 8 H 0.067 0.933 9 N -0.282 5.282 10 C 0.042 3.958 11 C -0.082 4.082 12 H 0.102 0.898 13 C -0.090 4.090 14 C -0.155 4.155 15 C -0.124 4.124 16 C -0.146 4.146 17 C -0.155 4.155 18 C -0.130 4.130 19 C -0.113 4.113 20 C -0.005 4.005 21 C -0.222 4.222 22 C -0.258 4.258 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.081 0.919 26 H 0.110 0.890 27 H 0.130 0.870 28 H 0.159 0.841 29 H 0.170 0.830 30 H 0.149 0.851 31 H 0.112 0.888 32 H 0.133 0.867 33 H 0.089 0.911 34 H 0.128 0.872 35 H 0.120 0.880 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.039 -4.759 9.218 10.573 hybrid contribution 0.477 1.464 -0.637 1.666 sum 2.516 -3.295 8.581 9.530 Atomic orbital electron populations 1.70116 1.06517 1.25934 1.53066 1.25589 0.95283 1.00488 1.00132 0.86034 0.78631 0.81362 0.78705 1.20620 1.22436 1.19182 1.18878 0.92118 0.85861 1.40480 0.93335 1.43492 1.49871 1.03931 1.30892 1.20665 0.90366 1.00971 0.83774 1.22222 0.96717 0.93284 0.95936 0.89760 1.21857 0.99195 0.94134 0.93816 1.22714 0.98999 0.98617 0.95174 1.20570 0.99425 0.93919 0.98458 1.21228 0.96173 0.98700 0.98508 1.21198 1.00969 0.98955 0.94402 1.20521 0.99232 0.94907 0.98303 1.22431 0.95275 0.96722 0.96904 1.21572 1.01551 0.90614 0.86804 1.22999 0.91936 1.02074 1.05164 1.23243 0.97406 1.00880 1.04266 0.94392 0.94108 0.91865 0.88981 0.87043 0.84133 0.82985 0.85142 0.88840 0.86732 0.91124 0.87190 0.88027 0.92970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.49 11.46 21.65 0.25 -53.24 16 2 C -0.02 -0.95 5.01 84.86 0.42 -0.53 16 3 Si 0.92 45.12 29.60 68.60 2.03 47.15 16 4 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 5 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 6 H -0.27 -12.48 6.99 99.48 0.70 -11.79 16 7 C -0.24 -13.01 8.46 84.03 0.71 -12.30 16 8 H 0.05 2.67 6.76 -2.91 -0.02 2.65 16 9 N -0.56 -27.31 2.74 -678.03 -1.86 -29.18 16 10 C 0.17 7.63 5.09 86.38 0.44 8.06 16 11 C -0.06 -2.34 4.15 -11.09 -0.05 -2.39 16 12 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 13 C -0.05 -1.61 7.86 30.30 0.24 -1.37 16 14 C -0.15 -5.40 7.49 -19.38 -0.15 -5.55 16 15 C -0.11 -3.22 10.03 22.27 0.22 -3.00 16 16 C -0.13 -3.84 10.04 22.24 0.22 -3.61 16 17 C -0.14 -4.82 10.04 22.24 0.22 -4.60 16 18 C -0.11 -4.68 10.03 22.27 0.22 -4.46 16 19 C -0.11 -4.64 6.91 -19.38 -0.13 -4.77 16 20 C 0.10 4.21 6.56 44.99 0.30 4.51 16 21 C -0.18 -7.01 9.80 30.59 0.30 -6.71 16 22 C -0.22 -8.66 10.36 30.60 0.32 -8.35 16 23 H 0.25 14.28 8.32 -92.71 -0.77 13.51 16 24 H 0.04 1.73 8.07 -2.39 -0.02 1.71 16 25 H 0.06 3.39 5.45 -2.39 -0.01 3.38 16 26 H 0.09 2.69 8.00 -2.38 -0.02 2.67 16 27 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 28 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 29 H 0.15 3.36 8.06 -2.91 -0.02 3.33 16 30 H 0.13 4.00 8.06 -2.91 -0.02 3.97 16 31 H 0.09 4.29 7.94 -2.91 -0.02 4.27 16 32 H 0.12 4.01 8.14 -2.38 -0.02 3.99 16 33 H 0.07 3.07 6.47 -2.39 -0.02 3.05 16 34 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 35 H 0.10 3.35 8.14 -2.38 -0.02 3.33 16 36 H 0.05 2.49 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -62.98 300.87 4.75 -58.23 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: 1.04 Total: 22.09 kcal Atomic # 6 Polarization: -48.34 SS G_CDS: 3.29 Total: -45.05 kcal Atomic # 7 Polarization: -80.81 SS G_CDS: -1.61 Total: -82.42 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -62.98 4.75 -58.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287391288.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.766 kcal (2) G-P(sol) polarization free energy of solvation -62.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds