Wall clock time and date at job start Mon Mar 30 2020 05:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86805 * 120.00020 * 2 1 4 4 H 1.48501 * 109.46954 * 270.00103 * 3 2 1 5 5 H 1.48501 * 109.46974 * 30.00306 * 3 2 1 6 6 H 1.48499 * 109.46975 * 150.00209 * 3 2 1 7 7 C 1.39865 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99940 * 163.04539 * 7 2 1 9 9 C 1.41131 * 120.00122 * 343.05580 * 7 2 1 10 10 C 1.40894 * 120.15169 * 334.53271 * 9 7 2 11 11 C 1.36340 * 119.83511 * 180.26292 * 10 9 7 12 12 C 1.39575 * 120.16091 * 359.44166 * 11 10 9 13 13 N 1.38850 * 119.84192 * 180.25937 * 12 11 10 14 14 C 1.46502 * 120.00145 * 0.30361 * 13 12 11 15 15 H 1.08995 * 110.43567 * 32.45196 * 14 13 12 16 16 C 1.54893 * 110.48217 * 269.77031 * 14 13 12 17 17 C 1.54889 * 102.75098 * 203.37862 * 16 14 13 18 18 C 1.54267 * 104.19256 * 37.94080 * 17 16 14 19 19 H 1.09001 * 117.76146 * 116.74715 * 18 17 16 20 20 C 1.55469 * 118.30270 * 272.80469 * 18 17 16 21 21 C 1.53005 * 59.83959 * 93.29644 * 20 18 17 22 22 H 1.09003 * 119.29623 * 111.70933 * 21 20 18 23 23 C 1.39573 * 120.31173 * 0.55963 * 12 11 10 24 24 C 1.36335 * 120.16197 * 359.72779 * 23 12 11 25 25 H 0.97001 * 120.00050 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.08185 * 359.97438 * 10 9 7 27 27 H 1.07996 * 119.91770 * 179.69861 * 11 10 9 28 28 H 0.97001 * 119.99827 * 180.29341 * 13 12 11 29 29 H 1.09001 * 110.75383 * 321.69282 * 16 14 13 30 30 H 1.09001 * 110.75967 * 85.06192 * 16 14 13 31 31 H 1.08997 * 110.48522 * 279.26865 * 17 16 14 32 32 H 1.08991 * 110.60141 * 156.67011 * 17 16 14 33 33 H 1.08998 * 118.06303 * 346.16325 * 20 18 17 34 34 H 1.09001 * 117.16527 * 200.82735 * 20 18 17 35 35 H 1.08004 * 119.91373 * 179.70579 * 23 12 11 36 36 H 1.08006 * 120.08043 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 2.4905 2.0464 -1.4001 5 1 1.4405 2.6527 0.7001 6 1 3.5406 1.4402 0.7000 7 6 2.0084 -1.2112 -0.0005 8 1 3.0532 -1.2314 -0.2733 9 6 1.3487 -2.4071 0.3551 10 6 0.2183 -2.3689 1.1952 11 6 -0.4108 -3.5286 1.5390 12 6 0.0555 -4.7505 1.0516 13 7 -0.5935 -5.9271 1.4017 14 6 -1.7687 -5.8834 2.2753 15 1 -2.3326 -4.9655 2.1091 16 6 -1.3447 -6.0011 3.7604 17 6 -2.6277 -6.5402 4.4405 18 6 -3.2099 -7.5349 3.4151 19 1 -3.2739 -8.5837 3.7049 20 6 -4.1628 -6.9869 2.3156 21 6 -2.6637 -7.1173 2.0384 22 1 -2.3169 -7.8580 1.3178 23 6 1.1747 -4.7959 0.2190 24 6 1.8172 -3.6447 -0.1284 25 1 -0.4850 0.8400 0.0004 26 1 -0.1462 -1.4238 1.5696 27 1 -1.2745 -3.5013 2.1868 28 1 -0.2688 -6.7779 1.0676 29 1 -0.5222 -6.7075 3.8724 30 1 -1.0747 -5.0251 4.1637 31 1 -3.3309 -5.7284 4.6261 32 1 -2.3824 -7.0517 5.3711 33 1 -4.5653 -5.9817 2.4404 34 1 -4.8275 -7.7024 1.8314 35 1 1.5329 -5.7454 -0.1507 36 1 2.6835 -3.6814 -0.7724 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304524856.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:14 Heat of formation + Delta-G solvation = 44.662893 kcal Electronic energy + Delta-G solvation = -16749.096921 eV Core-core repulsion = 14198.091170 eV Total energy + Delta-G solvation = -2551.005751 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.51827 -37.59655 -34.57941 -32.76728 -30.95549 -29.42818 -28.85892 -26.47831 -24.07504 -22.56431 -21.41113 -20.45090 -19.95787 -19.25159 -17.18477 -16.25320 -16.11637 -14.92897 -14.49597 -14.24904 -13.70017 -13.33428 -12.81142 -12.75375 -12.57116 -12.13214 -11.98488 -11.60565 -11.49836 -11.14145 -10.99059 -10.96192 -10.76983 -10.58444 -10.42004 -10.12483 -9.68069 -9.60071 -9.24394 -9.16175 -8.50322 -7.46439 -6.60384 -6.34506 -4.00810 2.93953 3.12764 3.16435 3.21298 3.37414 3.61550 4.07787 4.23214 4.54389 4.74333 4.83227 5.08711 5.20012 5.36801 5.54730 5.57611 5.65123 5.76920 5.80495 5.87741 5.98126 6.19051 6.20765 6.28922 6.34921 6.35281 6.50096 6.96289 6.99149 7.23108 7.38694 7.59902 7.72260 7.87467 8.18025 8.32944 8.53590 8.74233 8.83909 9.09037 9.18361 10.40954 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.041272 B = 0.004901 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.260574 B = 5711.911670 C = 6004.361650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.075 3.925 3 Si 0.902 3.098 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.468 4.468 8 H 0.072 0.928 9 C 0.074 3.926 10 C -0.123 4.123 11 C -0.165 4.165 12 C 0.095 3.905 13 N -0.752 5.752 14 C 0.188 3.812 15 H 0.080 0.920 16 C -0.137 4.137 17 C -0.095 4.095 18 C -0.170 4.170 19 H 0.107 0.893 20 C -0.155 4.155 21 C -0.166 4.166 22 H 0.107 0.893 23 C -0.160 4.160 24 C -0.186 4.186 25 H 0.276 0.724 26 H 0.118 0.882 27 H 0.088 0.912 28 H 0.383 0.617 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.773 -9.872 5.861 12.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.499 4.499 8 H 0.090 0.910 9 C 0.071 3.929 10 C -0.142 4.142 11 C -0.187 4.187 12 C -0.002 4.002 13 N -0.385 5.385 14 C 0.080 3.920 15 H 0.098 0.902 16 C -0.176 4.176 17 C -0.133 4.133 18 C -0.188 4.188 19 H 0.125 0.875 20 C -0.192 4.192 21 C -0.185 4.185 22 H 0.125 0.875 23 C -0.183 4.183 24 C -0.206 4.206 25 H 0.086 0.914 26 H 0.136 0.864 27 H 0.106 0.894 28 H 0.216 0.784 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.071 -9.594 5.939 12.813 hybrid contribution 0.426 0.375 -0.270 0.628 sum -5.646 -9.219 5.669 12.207 Atomic orbital electron populations 1.69852 1.07342 1.28541 1.38020 1.25781 0.94650 1.00825 0.92759 0.86428 0.80622 0.81298 0.78960 1.19796 1.20359 1.18727 1.19352 0.97513 0.91266 1.41764 0.91012 1.17491 0.92515 0.91997 0.90923 1.20934 0.98101 0.96341 0.98868 1.20115 1.01494 0.91995 1.05077 1.17360 0.95540 0.85672 1.01638 1.43833 1.32009 1.05932 1.56749 1.21026 0.86297 0.95923 0.88735 0.90220 1.23179 0.97064 1.01329 0.96039 1.21901 0.96879 0.97509 0.97019 1.23651 1.04739 0.99541 0.90861 0.87508 1.23416 0.92091 1.02276 1.01382 1.23493 0.94834 1.00746 0.99413 0.87467 1.19805 0.97906 0.97064 1.03486 1.20548 1.02609 0.92707 1.04760 0.91376 0.86435 0.89382 0.78409 0.91277 0.91135 0.91497 0.91443 0.88792 0.88645 0.89646 0.89094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.77 10.96 55.54 0.61 -21.16 16 2 C 0.07 1.95 5.15 -17.34 -0.09 1.86 16 3 Si 0.90 19.42 29.59 -169.99 -5.03 14.38 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.47 -12.87 9.03 -37.88 -0.34 -13.21 16 8 H 0.07 1.91 7.90 -52.49 -0.41 1.49 16 9 C 0.07 2.02 5.57 -106.79 -0.59 1.42 16 10 C -0.12 -3.25 8.63 -39.26 -0.34 -3.59 16 11 C -0.17 -3.90 9.14 -39.77 -0.36 -4.27 16 12 C 0.09 2.09 6.67 -83.69 -0.56 1.53 16 13 N -0.75 -13.32 5.30 -50.43 -0.27 -13.59 16 14 C 0.19 2.89 2.70 -66.27 -0.18 2.71 16 15 H 0.08 1.37 6.37 -51.93 -0.33 1.04 16 16 C -0.14 -1.91 6.58 -24.74 -0.16 -2.07 16 17 C -0.10 -1.08 6.64 -25.07 -0.17 -1.25 16 18 C -0.17 -1.87 7.04 -88.19 -0.62 -2.49 16 19 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 20 C -0.15 -1.71 10.21 -25.42 -0.26 -1.97 16 21 C -0.17 -2.11 6.44 -89.50 -0.58 -2.68 16 22 H 0.11 1.32 8.05 -51.93 -0.42 0.90 16 23 C -0.16 -3.66 9.82 -39.77 -0.39 -4.05 16 24 C -0.19 -4.68 9.74 -39.27 -0.38 -5.06 16 25 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 26 H 0.12 3.23 6.19 -52.49 -0.32 2.91 16 27 H 0.09 1.91 6.17 -52.49 -0.32 1.59 16 28 H 0.38 6.11 8.58 -40.82 -0.35 5.76 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.09 1.72 8.06 -52.48 -0.42 1.29 16 36 H 0.09 2.16 8.06 -52.48 -0.42 1.74 16 LS Contribution 295.19 15.07 4.45 4.45 Total: -1.00 -28.08 295.19 -10.37 -38.44 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -5.10 Total: 10.58 kcal Atomic # 6 Polarization: -28.09 SS G_CDS: -5.02 Total: -33.11 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.34 Total: -34.75 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.08 -10.37 -38.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304524856.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.108 kcal (2) G-P(sol) polarization free energy of solvation -28.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds