Wall clock time and date at job start Mon Mar 30 2020 05:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86805 * 120.00020 * 2 1 4 4 H 1.48501 * 109.46954 * 270.00103 * 3 2 1 5 5 H 1.48501 * 109.46974 * 30.00306 * 3 2 1 6 6 H 1.48499 * 109.46975 * 150.00209 * 3 2 1 7 7 C 1.39865 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99940 * 163.04539 * 7 2 1 9 9 C 1.41131 * 120.00122 * 343.05580 * 7 2 1 10 10 C 1.40894 * 120.15169 * 334.53271 * 9 7 2 11 11 C 1.36340 * 119.83511 * 180.26292 * 10 9 7 12 12 C 1.39575 * 120.16091 * 359.44166 * 11 10 9 13 13 N 1.38850 * 119.84192 * 180.25937 * 12 11 10 14 14 C 1.46502 * 120.00145 * 0.30361 * 13 12 11 15 15 H 1.08995 * 110.43567 * 32.45196 * 14 13 12 16 16 C 1.54893 * 110.48217 * 269.77031 * 14 13 12 17 17 C 1.54889 * 102.75098 * 203.37862 * 16 14 13 18 18 C 1.54267 * 104.19256 * 37.94080 * 17 16 14 19 19 H 1.09001 * 117.76146 * 116.74715 * 18 17 16 20 20 C 1.55469 * 118.30270 * 272.80469 * 18 17 16 21 21 C 1.53005 * 59.83959 * 93.29644 * 20 18 17 22 22 H 1.09003 * 119.29623 * 111.70933 * 21 20 18 23 23 C 1.39573 * 120.31173 * 0.55963 * 12 11 10 24 24 C 1.36335 * 120.16197 * 359.72779 * 23 12 11 25 25 H 0.97001 * 120.00050 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.08185 * 359.97438 * 10 9 7 27 27 H 1.07996 * 119.91770 * 179.69861 * 11 10 9 28 28 H 0.97001 * 119.99827 * 180.29341 * 13 12 11 29 29 H 1.09001 * 110.75383 * 321.69282 * 16 14 13 30 30 H 1.09001 * 110.75967 * 85.06192 * 16 14 13 31 31 H 1.08997 * 110.48522 * 279.26865 * 17 16 14 32 32 H 1.08991 * 110.60141 * 156.67011 * 17 16 14 33 33 H 1.08998 * 118.06303 * 346.16325 * 20 18 17 34 34 H 1.09001 * 117.16527 * 200.82735 * 20 18 17 35 35 H 1.08004 * 119.91373 * 179.70579 * 23 12 11 36 36 H 1.08006 * 120.08043 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 2.4905 2.0464 -1.4001 5 1 1.4405 2.6527 0.7001 6 1 3.5406 1.4402 0.7000 7 6 2.0084 -1.2112 -0.0005 8 1 3.0532 -1.2314 -0.2733 9 6 1.3487 -2.4071 0.3551 10 6 0.2183 -2.3689 1.1952 11 6 -0.4108 -3.5286 1.5390 12 6 0.0555 -4.7505 1.0516 13 7 -0.5935 -5.9271 1.4017 14 6 -1.7687 -5.8834 2.2753 15 1 -2.3326 -4.9655 2.1091 16 6 -1.3447 -6.0011 3.7604 17 6 -2.6277 -6.5402 4.4405 18 6 -3.2099 -7.5349 3.4151 19 1 -3.2739 -8.5837 3.7049 20 6 -4.1628 -6.9869 2.3156 21 6 -2.6637 -7.1173 2.0384 22 1 -2.3169 -7.8580 1.3178 23 6 1.1747 -4.7959 0.2190 24 6 1.8172 -3.6447 -0.1284 25 1 -0.4850 0.8400 0.0004 26 1 -0.1462 -1.4238 1.5696 27 1 -1.2745 -3.5013 2.1868 28 1 -0.2688 -6.7779 1.0676 29 1 -0.5222 -6.7075 3.8724 30 1 -1.0747 -5.0251 4.1637 31 1 -3.3309 -5.7284 4.6261 32 1 -2.3824 -7.0517 5.3711 33 1 -4.5653 -5.9817 2.4404 34 1 -4.8275 -7.7024 1.8314 35 1 1.5329 -5.7454 -0.1507 36 1 2.6835 -3.6814 -0.7724 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304524856.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:13 Heat of formation + Delta-G solvation = 30.746666 kcal Electronic energy + Delta-G solvation = -16749.700374 eV Core-core repulsion = 14198.091170 eV Total energy + Delta-G solvation = -2551.609204 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.67856 -39.33190 -36.28267 -34.52655 -32.08666 -31.33789 -30.58117 -27.93233 -25.82376 -23.61059 -23.18130 -22.05890 -21.16783 -20.45630 -19.15549 -17.84621 -17.34745 -16.75297 -15.93473 -15.57235 -15.31741 -14.59594 -14.45918 -14.29992 -13.86674 -13.78898 -13.55772 -13.31317 -13.04077 -12.72641 -12.42208 -12.33965 -12.16268 -12.10616 -11.67331 -11.58376 -11.23103 -11.09417 -10.92400 -10.53670 -10.26912 -9.40849 -8.53866 -8.14791 -6.01037 1.10719 1.18447 1.40076 1.52492 1.59336 2.27811 2.69191 2.83635 2.86559 3.54956 3.80289 3.88839 4.08216 4.20029 4.31667 4.46383 4.49064 4.54571 4.57396 4.63753 4.76298 4.92478 5.01845 5.08088 5.10615 5.21182 5.24413 5.27640 5.31152 5.44299 5.46622 5.70646 5.81871 5.96443 6.18887 6.39575 6.68142 6.88288 7.08679 7.15573 7.33103 8.49381 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.041272 B = 0.004901 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.260574 B = 5711.911670 C = 6004.361650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.032 3.968 3 Si 0.977 3.023 4 H -0.264 1.264 5 H -0.269 1.269 6 H -0.261 1.261 7 C -0.507 4.507 8 H 0.068 0.932 9 C 0.034 3.966 10 C -0.142 4.142 11 C -0.175 4.175 12 C 0.115 3.885 13 N -0.742 5.742 14 C 0.180 3.820 15 H 0.058 0.942 16 C -0.135 4.135 17 C -0.092 4.092 18 C -0.154 4.154 19 H 0.129 0.871 20 C -0.150 4.150 21 C -0.181 4.181 22 H 0.115 0.885 23 C -0.167 4.167 24 C -0.195 4.195 25 H 0.282 0.718 26 H 0.098 0.902 27 H 0.102 0.898 28 H 0.396 0.604 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.463 -11.594 6.470 14.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.180 4.180 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.193 1.193 6 H -0.185 1.185 7 C -0.538 4.538 8 H 0.086 0.914 9 C 0.031 3.969 10 C -0.162 4.162 11 C -0.197 4.197 12 C 0.015 3.985 13 N -0.375 5.375 14 C 0.073 3.927 15 H 0.076 0.924 16 C -0.174 4.174 17 C -0.130 4.130 18 C -0.172 4.172 19 H 0.147 0.853 20 C -0.187 4.187 21 C -0.200 4.200 22 H 0.133 0.867 23 C -0.190 4.190 24 C -0.215 4.215 25 H 0.092 0.908 26 H 0.116 0.884 27 H 0.120 0.880 28 H 0.231 0.769 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.783 -11.368 6.560 14.774 hybrid contribution 0.564 0.727 -0.428 1.015 sum -6.219 -10.640 6.132 13.766 Atomic orbital electron populations 1.69920 1.08791 1.29751 1.38844 1.26614 0.95449 1.04106 0.91826 0.85299 0.79080 0.76560 0.79266 1.18929 1.19310 1.18509 1.19592 0.97640 0.92649 1.43944 0.91391 1.17818 0.93641 0.93102 0.92307 1.20858 0.98875 0.96575 0.99872 1.20241 1.01907 0.91978 1.05558 1.17463 0.94757 0.86611 0.99625 1.43880 1.32142 1.04992 1.56481 1.21179 0.85707 0.96618 0.89170 0.92432 1.23109 0.98555 1.00625 0.95149 1.21895 0.95406 0.97897 0.97773 1.23754 1.03485 1.00441 0.89531 0.85325 1.23536 0.91275 1.02684 1.01205 1.23378 0.95584 0.99667 1.01346 0.86713 1.20107 0.97813 0.97687 1.03344 1.20767 1.02999 0.92942 1.04773 0.90799 0.88406 0.88035 0.76938 0.91227 0.92905 0.91359 0.89502 0.89346 0.86586 0.86419 0.88455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.99 10.96 21.82 0.24 -46.75 16 2 C 0.03 1.69 5.15 85.23 0.44 2.13 16 3 Si 0.98 40.67 29.59 68.60 2.03 42.70 16 4 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 5 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 6 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 7 C -0.51 -29.01 9.03 23.37 0.21 -28.79 16 8 H 0.07 3.76 7.90 -2.91 -0.02 3.74 16 9 C 0.03 1.94 5.57 -21.27 -0.12 1.82 16 10 C -0.14 -7.83 8.63 22.48 0.19 -7.64 16 11 C -0.17 -8.42 9.14 22.15 0.20 -8.22 16 12 C 0.11 4.99 6.67 38.68 0.26 5.25 16 13 N -0.74 -25.04 5.30 -313.47 -1.66 -26.70 16 14 C 0.18 5.28 2.70 46.06 0.12 5.40 16 15 H 0.06 1.95 6.37 -2.39 -0.02 1.94 16 16 C -0.14 -3.57 6.58 31.89 0.21 -3.36 16 17 C -0.09 -1.84 6.64 31.67 0.21 -1.63 16 18 C -0.15 -2.84 7.04 -9.22 -0.06 -2.90 16 19 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 20 C -0.15 -2.86 10.21 31.45 0.32 -2.54 16 21 C -0.18 -4.11 6.44 -10.07 -0.06 -4.17 16 22 H 0.11 2.45 8.05 -2.39 -0.02 2.44 16 23 C -0.17 -7.48 9.82 22.15 0.22 -7.26 16 24 C -0.19 -9.94 9.74 22.47 0.22 -9.72 16 25 H 0.28 14.25 8.30 -92.71 -0.77 13.48 16 26 H 0.10 5.69 6.19 -2.91 -0.02 5.67 16 27 H 0.10 4.50 6.17 -2.91 -0.02 4.48 16 28 H 0.40 11.59 8.58 -92.71 -0.80 10.79 16 29 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 36 H 0.10 4.70 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -62.24 295.19 3.24 -59.00 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: 0.28 Total: 33.41 kcal Atomic # 6 Polarization: -64.01 SS G_CDS: 2.36 Total: -61.65 kcal Atomic # 7 Polarization: -72.03 SS G_CDS: -1.42 Total: -73.46 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -62.24 3.24 -59.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304524856.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.745 kcal (2) G-P(sol) polarization free energy of solvation -62.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds