Wall clock time and date at job start Mon Mar 30 2020 05:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30895 * 1 3 3 Si 1.86802 * 120.00058 * 2 1 4 4 H 1.48498 * 109.47224 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46960 * 300.00171 * 3 2 1 6 6 H 1.48504 * 109.46968 * 60.00070 * 3 2 1 7 7 C 1.39868 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99949 * 197.98518 * 7 2 1 9 9 C 1.41138 * 119.99814 * 17.97529 * 7 2 1 10 10 C 1.40884 * 120.15426 * 204.60757 * 9 7 2 11 11 C 1.36338 * 119.83383 * 179.97438 * 10 9 7 12 12 C 1.39564 * 120.16310 * 0.02562 * 11 10 9 13 13 N 1.38865 * 119.84381 * 179.97438 * 12 11 10 14 14 C 1.46499 * 120.00176 * 179.97438 * 13 12 11 15 15 H 1.09009 * 110.43249 * 32.46044 * 14 13 12 16 16 C 1.54892 * 110.59965 * 269.84555 * 14 13 12 17 17 C 1.54894 * 102.74431 * 279.20630 * 16 14 13 18 18 C 1.56210 * 104.22819 * 321.67222 * 17 16 14 19 19 H 1.09001 * 119.04026 * 243.50679 * 18 17 16 20 20 C 1.53002 * 117.00108 * 87.85616 * 18 17 16 21 21 C 1.53003 * 60.34858 * 266.87901 * 20 18 17 22 22 H 1.09003 * 119.30299 * 248.70745 * 21 20 18 23 23 C 1.39565 * 120.31646 * 0.23558 * 12 11 10 24 24 C 1.36343 * 120.15867 * 359.47824 * 23 12 11 25 25 H 0.97001 * 120.00412 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.08491 * 359.96184 * 10 9 7 27 27 H 1.08004 * 119.92055 * 180.02562 * 11 10 9 28 28 H 0.97005 * 119.99755 * 0.02562 * 13 12 11 29 29 H 1.08998 * 110.75347 * 37.51723 * 16 14 13 30 30 H 1.08993 * 110.75485 * 160.70680 * 16 14 13 31 31 H 1.09004 * 110.48235 * 80.73414 * 17 16 14 32 32 H 1.08994 * 110.48116 * 203.24550 * 17 16 14 33 33 H 1.09000 * 117.45833 * 159.29541 * 20 18 17 34 34 H 1.08994 * 117.46223 * 14.46605 * 20 18 17 35 35 H 1.08001 * 119.92250 * 179.72505 * 23 12 11 36 36 H 1.08001 * 120.08616 * 180.23504 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.7030 1.3464 0.0006 5 1 1.8842 2.3964 -1.2125 6 1 1.8842 2.3964 1.2126 7 6 2.0083 -1.2113 -0.0005 8 1 3.0487 -1.2342 0.2882 9 6 1.3543 -2.4036 -0.3783 10 6 1.8266 -3.6473 0.0854 11 6 1.1895 -4.7949 -0.2832 12 6 0.0725 -4.7398 -1.1181 13 7 -0.5710 -5.9129 -1.4897 14 6 -1.7442 -5.8590 -2.3655 15 1 -1.6603 -5.0256 -3.0632 16 6 -3.0428 -5.7379 -1.5300 17 6 -3.3048 -7.2002 -1.0918 18 6 -2.9056 -8.0522 -2.3388 19 1 -3.6711 -8.6408 -2.8444 20 6 -1.4398 -8.4765 -2.4499 21 6 -1.9087 -7.1887 -3.1301 22 1 -1.9398 -7.1411 -4.2186 23 6 -0.3977 -3.5117 -1.5856 24 6 0.2260 -2.3555 -1.2205 25 1 -0.4851 0.8400 -0.0004 26 1 2.6912 -3.6915 0.7310 27 1 1.5501 -5.7491 0.0718 28 1 -0.2442 -6.7679 -1.1688 29 1 -2.8857 -5.0969 -0.6626 30 1 -3.8625 -5.3625 -2.1425 31 1 -2.6852 -7.4578 -0.2327 32 1 -4.3594 -7.3451 -0.8576 33 1 -1.2103 -9.3282 -3.0902 34 1 -0.8190 -8.3774 -1.5595 35 1 -1.2599 -3.4768 -2.2350 36 1 -0.1412 -1.4055 -1.5800 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304524866.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:16 Heat of formation + Delta-G solvation = 48.188022 kcal Electronic energy + Delta-G solvation = -16894.099759 eV Core-core repulsion = 14343.246869 eV Total energy + Delta-G solvation = -2550.852890 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.74417 -37.52492 -34.38585 -32.64997 -31.00900 -29.41904 -28.73302 -26.72933 -24.17446 -22.62542 -21.26945 -20.72039 -19.75524 -18.81197 -17.18506 -16.76837 -15.62162 -15.21592 -14.89639 -13.96623 -13.68157 -13.30108 -12.88706 -12.67383 -12.35903 -12.04813 -11.93494 -11.71032 -11.41934 -11.02082 -11.00705 -10.82730 -10.72865 -10.62402 -10.41047 -10.13931 -9.70561 -9.65077 -9.23603 -9.19306 -8.47590 -7.45842 -6.61540 -6.34271 -3.99893 2.92790 3.13217 3.17203 3.22654 3.37501 3.64972 4.07870 4.37278 4.56710 4.75811 4.81814 4.95299 5.20169 5.31491 5.57552 5.61715 5.67475 5.82043 5.86752 5.96761 6.03073 6.16462 6.20257 6.30873 6.37185 6.40986 6.48588 6.97048 7.00662 7.23578 7.38977 7.60797 7.72741 7.88345 8.18689 8.33764 8.54711 8.75114 8.84681 9.09309 9.18919 10.40225 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.049468 B = 0.004971 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.882703 B = 5631.590673 C = 5922.052334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.075 3.925 3 Si 0.901 3.099 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.277 1.277 7 C -0.467 4.467 8 H 0.072 0.928 9 C 0.073 3.927 10 C -0.186 4.186 11 C -0.161 4.161 12 C 0.095 3.905 13 N -0.750 5.750 14 C 0.186 3.814 15 H 0.081 0.919 16 C -0.141 4.141 17 C -0.090 4.090 18 C -0.165 4.165 19 H 0.109 0.891 20 C -0.155 4.155 21 C -0.170 4.170 22 H 0.110 0.890 23 C -0.165 4.165 24 C -0.124 4.124 25 H 0.275 0.725 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.382 0.618 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.458 -10.561 -4.318 12.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.498 4.498 8 H 0.090 0.910 9 C 0.070 3.930 10 C -0.207 4.207 11 C -0.183 4.183 12 C -0.002 4.002 13 N -0.385 5.385 14 C 0.079 3.921 15 H 0.099 0.901 16 C -0.181 4.181 17 C -0.128 4.128 18 C -0.183 4.183 19 H 0.127 0.873 20 C -0.193 4.193 21 C -0.189 4.189 22 H 0.128 0.872 23 C -0.187 4.187 24 C -0.144 4.144 25 H 0.086 0.914 26 H 0.109 0.891 27 H 0.102 0.898 28 H 0.217 0.783 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.767 -10.278 -4.405 12.582 hybrid contribution 0.394 0.441 0.113 0.602 sum -5.373 -9.837 -4.292 12.002 Atomic orbital electron populations 1.69862 1.07360 1.28453 1.37919 1.25781 0.94630 1.00842 0.92751 0.86386 0.81016 0.81674 0.78296 1.18645 1.19981 1.20304 1.19395 0.97928 0.91399 1.41123 0.90959 1.17496 0.92443 0.91974 0.91069 1.20535 1.02660 0.92632 1.04834 1.19796 0.98032 0.96989 1.03473 1.17365 0.95525 0.85772 1.01554 1.43979 1.32017 1.05736 1.56807 1.20877 0.85815 0.94690 0.90744 0.90140 1.23166 0.97858 0.96183 1.00858 1.22233 1.00574 0.94202 0.95779 1.23675 0.92347 1.02619 0.99680 0.87304 1.22911 0.96369 0.97240 1.02730 1.23523 1.05461 0.91403 0.98519 0.87229 1.20123 1.01861 0.91905 1.04773 1.20938 0.98145 0.96437 0.98831 0.91427 0.89135 0.89753 0.78346 0.90516 0.91449 0.91529 0.91876 0.88705 0.88983 0.89307 0.86442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.68 10.96 55.54 0.61 -21.07 16 2 C 0.07 1.95 5.13 -17.34 -0.09 1.86 16 3 Si 0.90 19.41 29.60 -169.99 -5.03 14.38 16 4 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.47 -12.85 9.03 -37.87 -0.34 -13.19 16 8 H 0.07 1.93 7.91 -52.49 -0.41 1.51 16 9 C 0.07 2.00 5.57 -106.79 -0.60 1.40 16 10 C -0.19 -4.68 9.74 -39.27 -0.38 -5.07 16 11 C -0.16 -3.66 9.82 -39.77 -0.39 -4.05 16 12 C 0.09 2.08 6.67 -83.69 -0.56 1.52 16 13 N -0.75 -13.18 5.23 -50.43 -0.26 -13.44 16 14 C 0.19 2.84 2.89 -66.27 -0.19 2.65 16 15 H 0.08 1.33 6.35 -51.92 -0.33 1.00 16 16 C -0.14 -2.01 6.59 -24.73 -0.16 -2.18 16 17 C -0.09 -1.11 6.62 -24.01 -0.16 -1.26 16 18 C -0.16 -1.84 7.11 -88.48 -0.63 -2.47 16 19 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 20 C -0.16 -1.74 9.64 -26.73 -0.26 -2.00 16 21 C -0.17 -2.13 6.78 -89.54 -0.61 -2.73 16 22 H 0.11 1.26 8.14 -51.93 -0.42 0.83 16 23 C -0.16 -3.88 9.14 -39.77 -0.36 -4.24 16 24 C -0.12 -3.27 8.64 -39.26 -0.34 -3.61 16 25 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 26 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 27 H 0.08 1.70 8.06 -52.48 -0.42 1.28 16 28 H 0.38 6.16 6.34 -40.82 -0.26 5.90 16 29 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.09 1.08 6.23 -51.93 -0.32 0.76 16 35 H 0.09 1.91 6.16 -52.49 -0.32 1.59 16 36 H 0.12 3.22 6.16 -52.49 -0.32 2.90 16 LS Contribution 291.02 15.07 4.39 4.39 Total: -1.00 -27.91 291.02 -10.28 -38.19 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -4.91 Total: 10.92 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: -5.07 Total: -33.36 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: 0.35 Total: -34.51 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.91 -10.28 -38.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304524866.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.375 kcal (2) G-P(sol) polarization free energy of solvation -27.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds