Wall clock time and date at job start Mon Mar 30 2020 05:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30895 * 1 3 3 Si 1.86802 * 120.00058 * 2 1 4 4 H 1.48498 * 109.47224 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46960 * 300.00171 * 3 2 1 6 6 H 1.48504 * 109.46968 * 60.00070 * 3 2 1 7 7 C 1.39868 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99949 * 197.98518 * 7 2 1 9 9 C 1.41138 * 119.99814 * 17.97529 * 7 2 1 10 10 C 1.40884 * 120.15426 * 204.60757 * 9 7 2 11 11 C 1.36338 * 119.83383 * 179.97438 * 10 9 7 12 12 C 1.39564 * 120.16310 * 0.02562 * 11 10 9 13 13 N 1.38865 * 119.84381 * 179.97438 * 12 11 10 14 14 C 1.46499 * 120.00176 * 179.97438 * 13 12 11 15 15 H 1.09009 * 110.43249 * 32.46044 * 14 13 12 16 16 C 1.54892 * 110.59965 * 269.84555 * 14 13 12 17 17 C 1.54894 * 102.74431 * 279.20630 * 16 14 13 18 18 C 1.56210 * 104.22819 * 321.67222 * 17 16 14 19 19 H 1.09001 * 119.04026 * 243.50679 * 18 17 16 20 20 C 1.53002 * 117.00108 * 87.85616 * 18 17 16 21 21 C 1.53003 * 60.34858 * 266.87901 * 20 18 17 22 22 H 1.09003 * 119.30299 * 248.70745 * 21 20 18 23 23 C 1.39565 * 120.31646 * 0.23558 * 12 11 10 24 24 C 1.36343 * 120.15867 * 359.47824 * 23 12 11 25 25 H 0.97001 * 120.00412 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.08491 * 359.96184 * 10 9 7 27 27 H 1.08004 * 119.92055 * 180.02562 * 11 10 9 28 28 H 0.97005 * 119.99755 * 0.02562 * 13 12 11 29 29 H 1.08998 * 110.75347 * 37.51723 * 16 14 13 30 30 H 1.08993 * 110.75485 * 160.70680 * 16 14 13 31 31 H 1.09004 * 110.48235 * 80.73414 * 17 16 14 32 32 H 1.08994 * 110.48116 * 203.24550 * 17 16 14 33 33 H 1.09000 * 117.45833 * 159.29541 * 20 18 17 34 34 H 1.08994 * 117.46223 * 14.46605 * 20 18 17 35 35 H 1.08001 * 119.92250 * 179.72505 * 23 12 11 36 36 H 1.08001 * 120.08616 * 180.23504 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.7030 1.3464 0.0006 5 1 1.8842 2.3964 -1.2125 6 1 1.8842 2.3964 1.2126 7 6 2.0083 -1.2113 -0.0005 8 1 3.0487 -1.2342 0.2882 9 6 1.3543 -2.4036 -0.3783 10 6 1.8266 -3.6473 0.0854 11 6 1.1895 -4.7949 -0.2832 12 6 0.0725 -4.7398 -1.1181 13 7 -0.5710 -5.9129 -1.4897 14 6 -1.7442 -5.8590 -2.3655 15 1 -1.6603 -5.0256 -3.0632 16 6 -3.0428 -5.7379 -1.5300 17 6 -3.3048 -7.2002 -1.0918 18 6 -2.9056 -8.0522 -2.3388 19 1 -3.6711 -8.6408 -2.8444 20 6 -1.4398 -8.4765 -2.4499 21 6 -1.9087 -7.1887 -3.1301 22 1 -1.9398 -7.1411 -4.2186 23 6 -0.3977 -3.5117 -1.5856 24 6 0.2260 -2.3555 -1.2205 25 1 -0.4851 0.8400 -0.0004 26 1 2.6912 -3.6915 0.7310 27 1 1.5501 -5.7491 0.0718 28 1 -0.2442 -6.7679 -1.1688 29 1 -2.8857 -5.0969 -0.6626 30 1 -3.8625 -5.3625 -2.1425 31 1 -2.6852 -7.4578 -0.2327 32 1 -4.3594 -7.3451 -0.8576 33 1 -1.2103 -9.3282 -3.0902 34 1 -0.8190 -8.3774 -1.5595 35 1 -1.2599 -3.4768 -2.2350 36 1 -0.1412 -1.4055 -1.5800 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304524866.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:16 Heat of formation + Delta-G solvation = 34.524160 kcal Electronic energy + Delta-G solvation = -16894.692268 eV Core-core repulsion = 14343.246869 eV Total energy + Delta-G solvation = -2551.445399 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.90937 -39.28568 -36.11579 -34.36543 -32.18663 -31.31800 -30.45743 -28.11018 -25.99486 -23.60509 -23.08958 -22.38864 -20.82265 -20.14980 -19.15568 -18.16396 -16.95683 -16.74226 -16.53307 -15.68821 -15.09337 -14.61087 -14.43492 -14.32784 -13.89577 -13.65252 -13.45581 -13.31324 -12.90028 -12.73565 -12.41529 -12.32751 -12.17444 -11.91670 -11.72500 -11.56261 -11.19399 -11.08079 -10.99311 -10.64262 -10.24602 -9.40096 -8.54823 -8.14348 -5.99890 1.10611 1.18680 1.40136 1.54560 1.58271 2.27795 2.65748 2.84174 3.01311 3.57139 3.79014 3.85793 3.97291 4.28257 4.30463 4.46143 4.51107 4.55012 4.58441 4.63985 4.88262 4.92177 5.01880 5.07738 5.12779 5.17682 5.22881 5.27873 5.32125 5.45716 5.46577 5.71684 5.82299 5.97427 6.19468 6.40269 6.68989 6.89698 7.09023 7.16259 7.33169 8.48952 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.049468 B = 0.004971 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.882703 B = 5631.590673 C = 5922.052334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.032 3.968 3 Si 0.976 3.024 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.506 4.506 8 H 0.067 0.933 9 C 0.034 3.966 10 C -0.195 4.195 11 C -0.169 4.169 12 C 0.116 3.884 13 N -0.739 5.739 14 C 0.175 3.825 15 H 0.065 0.935 16 C -0.140 4.140 17 C -0.090 4.090 18 C -0.150 4.150 19 H 0.133 0.867 20 C -0.151 4.151 21 C -0.181 4.181 22 H 0.123 0.877 23 C -0.174 4.174 24 C -0.142 4.142 25 H 0.282 0.718 26 H 0.096 0.904 27 H 0.115 0.885 28 H 0.393 0.607 29 H 0.046 0.954 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.117 0.883 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.103 -12.410 -5.009 14.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.179 4.179 3 Si 0.798 3.202 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.193 1.193 7 C -0.538 4.538 8 H 0.085 0.915 9 C 0.031 3.969 10 C -0.215 4.215 11 C -0.191 4.191 12 C 0.016 3.984 13 N -0.374 5.374 14 C 0.069 3.931 15 H 0.083 0.917 16 C -0.179 4.179 17 C -0.127 4.127 18 C -0.168 4.168 19 H 0.151 0.849 20 C -0.188 4.188 21 C -0.200 4.200 22 H 0.141 0.859 23 C -0.196 4.196 24 C -0.162 4.162 25 H 0.092 0.908 26 H 0.114 0.886 27 H 0.133 0.867 28 H 0.229 0.771 29 H 0.065 0.935 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.135 0.865 34 H 0.103 0.897 35 H 0.122 0.878 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.434 -12.178 -5.105 14.689 hybrid contribution 0.510 0.830 0.305 1.021 sum -5.924 -11.348 -4.800 13.672 Atomic orbital electron populations 1.69925 1.08786 1.29705 1.38712 1.26604 0.95429 1.04083 0.91833 0.85257 0.79400 0.76871 0.78700 1.18432 1.19110 1.19332 1.19614 0.98000 0.92816 1.43338 0.91477 1.17819 0.93596 0.93039 0.92463 1.20744 1.03036 0.92872 1.04879 1.20088 0.98049 0.97567 1.03387 1.17466 0.94662 0.86742 0.99517 1.44036 1.32209 1.04711 1.56451 1.21061 0.85162 0.96326 0.90535 0.91677 1.23111 0.97761 0.97363 0.99694 1.22217 1.01644 0.92767 0.96078 1.23744 0.92890 1.01773 0.98359 0.84879 1.23028 0.96304 0.96962 1.02508 1.23430 1.07436 0.90156 0.98968 0.85945 1.20256 1.02299 0.91832 1.05212 1.20865 0.98879 0.96681 0.99820 0.90790 0.88582 0.86692 0.77099 0.93549 0.90046 0.92446 0.90087 0.86474 0.89683 0.87792 0.88381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.79 10.96 21.82 0.24 -46.55 16 2 C 0.03 1.72 5.13 85.23 0.44 2.16 16 3 Si 0.98 40.71 29.60 68.60 2.03 42.74 16 4 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 6 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 7 C -0.51 -29.01 9.03 23.38 0.21 -28.80 16 8 H 0.07 3.74 7.91 -2.91 -0.02 3.72 16 9 C 0.03 1.91 5.57 -21.27 -0.12 1.80 16 10 C -0.20 -9.99 9.74 22.47 0.22 -9.77 16 11 C -0.17 -7.57 9.82 22.15 0.22 -7.35 16 12 C 0.12 5.01 6.67 38.67 0.26 5.26 16 13 N -0.74 -24.83 5.23 -313.47 -1.64 -26.46 16 14 C 0.18 5.08 2.89 46.07 0.13 5.22 16 15 H 0.07 2.09 6.35 -2.38 -0.02 2.08 16 16 C -0.14 -3.80 6.59 31.89 0.21 -3.59 16 17 C -0.09 -1.95 6.62 32.36 0.21 -1.73 16 18 C -0.15 -2.76 7.11 -9.41 -0.07 -2.82 16 19 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 20 C -0.15 -2.82 9.64 30.60 0.29 -2.53 16 21 C -0.18 -3.97 6.78 -10.09 -0.07 -4.04 16 22 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 23 C -0.17 -8.33 9.14 22.15 0.20 -8.12 16 24 C -0.14 -7.84 8.64 22.48 0.19 -7.65 16 25 H 0.28 14.18 8.30 -92.71 -0.77 13.42 16 26 H 0.10 4.66 8.06 -2.91 -0.02 4.64 16 27 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 28 H 0.39 11.73 6.34 -92.70 -0.59 11.14 16 29 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.08 1.72 6.23 -2.39 -0.01 1.71 16 35 H 0.10 4.55 6.16 -2.91 -0.02 4.53 16 36 H 0.10 5.69 6.16 -2.91 -0.02 5.67 16 Total: -1.00 -62.08 291.02 3.46 -58.62 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: 0.49 Total: 33.62 kcal Atomic # 6 Polarization: -64.30 SS G_CDS: 2.34 Total: -61.97 kcal Atomic # 7 Polarization: -71.62 SS G_CDS: -1.40 Total: -73.02 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -62.08 3.46 -58.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304524866.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.147 kcal (2) G-P(sol) polarization free energy of solvation -62.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds