Wall clock time and date at job start Mon Mar 30 2020 05:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30897 * 1 3 3 Si 1.86801 * 120.00067 * 2 1 4 4 H 1.48499 * 109.47114 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.46711 * 239.99966 * 3 2 1 6 6 H 1.48500 * 109.47057 * 119.99831 * 3 2 1 7 7 C 1.39873 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.07990 * 119.99938 * 154.23734 * 7 2 1 9 9 C 1.41138 * 119.99587 * 334.23658 * 7 2 1 10 10 C 1.40881 * 120.15775 * 334.49729 * 9 7 2 11 11 C 1.36347 * 119.83529 * 179.73990 * 10 9 7 12 12 C 1.39568 * 120.15912 * 0.53043 * 11 10 9 13 13 N 1.38849 * 119.84188 * 179.73995 * 12 11 10 14 14 C 1.46501 * 119.99729 * 359.97438 * 13 12 11 15 15 H 1.08996 * 110.43737 * 325.69592 * 14 13 12 16 16 C 1.54890 * 110.48469 * 88.24569 * 14 13 12 17 17 C 1.55233 * 102.59146 * 80.81182 * 16 14 13 18 18 C 1.54270 * 104.23160 * 37.91229 * 17 16 14 19 19 H 1.09004 * 117.75712 * 116.75326 * 18 17 16 20 20 C 1.53000 * 118.20036 * 272.21316 * 18 17 16 21 21 C 1.53002 * 60.37689 * 93.61498 * 20 18 17 22 22 H 1.08996 * 119.29230 * 112.24093 * 21 20 18 23 23 C 1.39572 * 120.31588 * 359.72045 * 12 11 10 24 24 C 1.36342 * 120.15953 * 0.02562 * 23 12 11 25 25 H 0.97003 * 120.00398 * 174.25104 * 1 2 3 26 26 H 1.07997 * 120.08166 * 359.97438 * 10 9 7 27 27 H 1.07999 * 119.91713 * 180.26956 * 11 10 9 28 28 H 0.96998 * 120.00288 * 179.97438 * 13 12 11 29 29 H 1.09004 * 110.75440 * 199.05017 * 16 14 13 30 30 H 1.08998 * 110.75384 * 322.41529 * 16 14 13 31 31 H 1.08999 * 110.46640 * 279.22388 * 17 16 14 32 32 H 1.09000 * 110.58466 * 156.66047 * 17 16 14 33 33 H 1.09006 * 117.45702 * 346.01544 * 20 18 17 34 34 H 1.08999 * 117.45848 * 201.21706 * 20 18 17 35 35 H 1.07995 * 119.92090 * 180.02562 * 23 12 11 36 36 H 1.07997 * 120.08048 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 1.2780 2.7465 -0.0006 5 1 3.0967 1.6963 -1.2125 6 1 3.0967 1.6964 1.2125 7 6 2.0083 -1.2113 0.0005 8 1 3.0077 -1.2580 -0.4059 9 6 1.4078 -2.3726 0.5324 10 6 0.3993 -2.2635 1.5100 11 6 -0.1801 -3.3895 2.0154 12 6 0.2314 -4.6482 1.5746 13 7 -0.3594 -5.7907 2.0977 14 6 -1.4117 -5.6731 3.1102 15 1 -1.2222 -4.8175 3.7584 16 6 -2.8005 -5.5460 2.4365 17 6 -3.1458 -7.0198 2.0923 18 6 -2.6108 -7.8253 3.2942 19 1 -3.3328 -8.3726 3.9004 20 6 -1.1543 -8.2928 3.2606 21 6 -1.5083 -6.9691 3.9415 22 1 -1.4033 -6.8808 5.0228 23 6 1.2336 -4.7640 0.6101 24 6 1.8182 -3.6464 0.0922 25 1 -0.4851 -0.8358 -0.0841 26 1 0.0832 -1.2903 1.8555 27 1 -0.9564 -3.3073 2.7617 28 1 -0.0755 -6.6666 1.7927 29 1 -3.5303 -5.1302 3.1313 30 1 -2.7373 -4.9401 1.5326 31 1 -2.6430 -7.3247 1.1745 32 1 -4.2239 -7.1484 1.9963 33 1 -0.6323 -8.2427 2.3050 34 1 -0.8804 -9.1305 3.9020 35 1 1.5468 -5.7411 0.2733 36 1 2.5933 -3.7375 -0.6543 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304524884.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:19 Heat of formation + Delta-G solvation = 41.442814 kcal Electronic energy + Delta-G solvation = -16944.908822 eV Core-core repulsion = 14393.763438 eV Total energy + Delta-G solvation = -2551.145384 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.86116 -37.73213 -34.63796 -32.68606 -31.03621 -29.57979 -28.58611 -26.69508 -24.13903 -22.71322 -21.37208 -20.82262 -19.77878 -18.95635 -17.77322 -16.82680 -15.70625 -15.30584 -14.41267 -14.05127 -13.71951 -13.41029 -13.24285 -12.73898 -12.31697 -12.15946 -12.06454 -11.79092 -11.44210 -11.13908 -10.93152 -10.87712 -10.75726 -10.70648 -10.31482 -10.18674 -9.74703 -9.56566 -9.36634 -9.05224 -8.53920 -7.68529 -7.01377 -6.50752 -4.06828 2.92555 2.96319 3.25165 3.38956 3.45793 3.58418 4.16488 4.30192 4.51920 4.69802 4.75943 4.90463 5.19522 5.25585 5.53631 5.57267 5.60733 5.68907 5.77613 5.90836 5.98366 6.10928 6.13419 6.16777 6.27405 6.32434 6.42277 6.78852 6.86276 7.11737 7.42848 7.50232 7.66036 7.92362 7.98186 8.25303 8.38851 8.51182 8.71017 8.98138 9.11581 10.27151 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.048729 B = 0.005019 C = 0.004782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.470294 B = 5577.774945 C = 5853.335331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.039 3.961 3 Si 1.062 2.938 4 H -0.276 1.276 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.536 4.536 8 H 0.069 0.931 9 C 0.066 3.934 10 C -0.180 4.180 11 C -0.146 4.146 12 C 0.083 3.917 13 N -0.750 5.750 14 C 0.186 3.814 15 H 0.079 0.921 16 C -0.141 4.141 17 C -0.091 4.091 18 C -0.163 4.163 19 H 0.107 0.893 20 C -0.154 4.154 21 C -0.170 4.170 22 H 0.111 0.889 23 C -0.147 4.147 24 C -0.190 4.190 25 H 0.296 0.704 26 H 0.105 0.895 27 H 0.091 0.909 28 H 0.383 0.617 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.551 -10.697 5.505 12.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.180 4.180 3 Si 0.887 3.113 4 H -0.201 1.201 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.565 4.565 8 H 0.087 0.913 9 C 0.063 3.937 10 C -0.200 4.200 11 C -0.168 4.168 12 C -0.014 4.014 13 N -0.386 5.386 14 C 0.078 3.922 15 H 0.096 0.904 16 C -0.180 4.180 17 C -0.129 4.129 18 C -0.181 4.181 19 H 0.125 0.875 20 C -0.191 4.191 21 C -0.189 4.189 22 H 0.129 0.871 23 C -0.169 4.169 24 C -0.210 4.210 25 H 0.109 0.891 26 H 0.123 0.877 27 H 0.109 0.891 28 H 0.217 0.783 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.910 -8.916 5.666 11.650 hybrid contribution 0.281 -2.123 -0.105 2.144 sum -4.629 -11.040 5.562 13.200 Atomic orbital electron populations 1.70480 1.08145 1.33844 1.31354 1.26826 0.95705 1.03923 0.91574 0.83693 0.75642 0.74284 0.77730 1.20122 1.20430 1.20262 1.20298 1.03201 0.94435 1.38593 0.91302 1.17561 0.92287 0.92494 0.91359 1.20766 1.02428 0.96726 1.00111 1.20030 1.02467 0.91594 1.02675 1.17277 0.98128 0.86175 0.99776 1.43946 1.42530 1.05451 1.46643 1.20890 0.87387 0.95043 0.88858 0.90351 1.23244 0.97270 0.96112 1.01386 1.21951 1.00050 0.94479 0.96415 1.23258 0.91206 1.02998 1.00680 0.87516 1.22911 0.97019 0.96761 1.02425 1.23528 1.05012 0.91257 0.99100 0.87060 1.19871 0.99596 0.97088 1.00354 1.20515 1.04606 0.92415 1.03486 0.89110 0.87708 0.89109 0.78275 0.91413 0.90559 0.91582 0.91726 0.89018 0.88577 0.89550 0.89010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.45 12.32 55.54 0.68 -21.76 16 2 C 0.04 1.04 4.92 -17.34 -0.09 0.95 16 3 Si 1.06 22.53 30.00 -169.99 -5.10 17.43 16 4 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 7 C -0.54 -14.81 8.96 -37.87 -0.34 -15.15 16 8 H 0.07 1.87 7.96 -52.49 -0.42 1.45 16 9 C 0.07 1.80 5.30 -106.80 -0.57 1.24 16 10 C -0.18 -4.70 7.90 -39.26 -0.31 -5.01 16 11 C -0.15 -3.37 9.14 -39.77 -0.36 -3.74 16 12 C 0.08 1.80 6.67 -83.69 -0.56 1.24 16 13 N -0.75 -13.00 5.23 -50.43 -0.26 -13.26 16 14 C 0.19 2.79 2.82 -66.27 -0.19 2.61 16 15 H 0.08 1.28 6.47 -51.93 -0.34 0.94 16 16 C -0.14 -1.98 6.61 -24.55 -0.16 -2.14 16 17 C -0.09 -1.11 6.59 -24.88 -0.16 -1.27 16 18 C -0.16 -1.80 6.94 -89.50 -0.62 -2.42 16 19 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 20 C -0.15 -1.70 9.66 -26.73 -0.26 -1.96 16 21 C -0.17 -2.09 6.83 -89.50 -0.61 -2.71 16 22 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 23 C -0.15 -3.32 9.82 -39.77 -0.39 -3.71 16 24 C -0.19 -4.77 9.74 -39.26 -0.38 -5.15 16 25 H 0.30 8.37 6.72 -40.82 -0.27 8.10 16 26 H 0.10 2.84 6.50 -52.49 -0.34 2.50 16 27 H 0.09 1.92 6.21 -52.49 -0.33 1.59 16 28 H 0.38 6.09 6.32 -40.82 -0.26 5.83 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 1.06 6.22 -51.93 -0.32 0.74 16 34 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 36 H 0.09 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 290.27 15.07 4.37 4.37 Total: -1.00 -28.07 290.27 -10.18 -38.25 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -4.88 Total: 12.19 kcal Atomic # 6 Polarization: -32.22 SS G_CDS: -5.00 Total: -37.22 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.42 Total: -35.02 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.10 Total: 17.43 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.07 -10.18 -38.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304524884.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.691 kcal (2) G-P(sol) polarization free energy of solvation -28.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds