Wall clock time and date at job start Mon Mar 30 2020 05:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30897 * 1 3 3 Si 1.86801 * 120.00067 * 2 1 4 4 H 1.48499 * 109.47114 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.46711 * 239.99966 * 3 2 1 6 6 H 1.48500 * 109.47057 * 119.99831 * 3 2 1 7 7 C 1.39873 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.07990 * 119.99938 * 154.23734 * 7 2 1 9 9 C 1.41138 * 119.99587 * 334.23658 * 7 2 1 10 10 C 1.40881 * 120.15775 * 334.49729 * 9 7 2 11 11 C 1.36347 * 119.83529 * 179.73990 * 10 9 7 12 12 C 1.39568 * 120.15912 * 0.53043 * 11 10 9 13 13 N 1.38849 * 119.84188 * 179.73995 * 12 11 10 14 14 C 1.46501 * 119.99729 * 359.97438 * 13 12 11 15 15 H 1.08996 * 110.43737 * 325.69592 * 14 13 12 16 16 C 1.54890 * 110.48469 * 88.24569 * 14 13 12 17 17 C 1.55233 * 102.59146 * 80.81182 * 16 14 13 18 18 C 1.54270 * 104.23160 * 37.91229 * 17 16 14 19 19 H 1.09004 * 117.75712 * 116.75326 * 18 17 16 20 20 C 1.53000 * 118.20036 * 272.21316 * 18 17 16 21 21 C 1.53002 * 60.37689 * 93.61498 * 20 18 17 22 22 H 1.08996 * 119.29230 * 112.24093 * 21 20 18 23 23 C 1.39572 * 120.31588 * 359.72045 * 12 11 10 24 24 C 1.36342 * 120.15953 * 0.02562 * 23 12 11 25 25 H 0.97003 * 120.00398 * 174.25104 * 1 2 3 26 26 H 1.07997 * 120.08166 * 359.97438 * 10 9 7 27 27 H 1.07999 * 119.91713 * 180.26956 * 11 10 9 28 28 H 0.96998 * 120.00288 * 179.97438 * 13 12 11 29 29 H 1.09004 * 110.75440 * 199.05017 * 16 14 13 30 30 H 1.08998 * 110.75384 * 322.41529 * 16 14 13 31 31 H 1.08999 * 110.46640 * 279.22388 * 17 16 14 32 32 H 1.09000 * 110.58466 * 156.66047 * 17 16 14 33 33 H 1.09006 * 117.45702 * 346.01544 * 20 18 17 34 34 H 1.08999 * 117.45848 * 201.21706 * 20 18 17 35 35 H 1.07995 * 119.92090 * 180.02562 * 23 12 11 36 36 H 1.07997 * 120.08048 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 1.2780 2.7465 -0.0006 5 1 3.0967 1.6963 -1.2125 6 1 3.0967 1.6964 1.2125 7 6 2.0083 -1.2113 0.0005 8 1 3.0077 -1.2580 -0.4059 9 6 1.4078 -2.3726 0.5324 10 6 0.3993 -2.2635 1.5100 11 6 -0.1801 -3.3895 2.0154 12 6 0.2314 -4.6482 1.5746 13 7 -0.3594 -5.7907 2.0977 14 6 -1.4117 -5.6731 3.1102 15 1 -1.2222 -4.8175 3.7584 16 6 -2.8005 -5.5460 2.4365 17 6 -3.1458 -7.0198 2.0923 18 6 -2.6108 -7.8253 3.2942 19 1 -3.3328 -8.3726 3.9004 20 6 -1.1543 -8.2928 3.2606 21 6 -1.5083 -6.9691 3.9415 22 1 -1.4033 -6.8808 5.0228 23 6 1.2336 -4.7640 0.6101 24 6 1.8182 -3.6464 0.0922 25 1 -0.4851 -0.8358 -0.0841 26 1 0.0832 -1.2903 1.8555 27 1 -0.9564 -3.3073 2.7617 28 1 -0.0755 -6.6666 1.7927 29 1 -3.5303 -5.1302 3.1313 30 1 -2.7373 -4.9401 1.5326 31 1 -2.6430 -7.3247 1.1745 32 1 -4.2239 -7.1484 1.9963 33 1 -0.6323 -8.2427 2.3050 34 1 -0.8804 -9.1305 3.9020 35 1 1.5468 -5.7411 0.2733 36 1 2.5933 -3.7375 -0.6543 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304524884.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:19 Heat of formation + Delta-G solvation = 27.583657 kcal Electronic energy + Delta-G solvation = -16945.509800 eV Core-core repulsion = 14393.763438 eV Total energy + Delta-G solvation = -2551.746362 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.02478 -39.50675 -36.38944 -34.38142 -32.19588 -31.48264 -30.28232 -28.09797 -26.00274 -23.68491 -23.17703 -22.54044 -20.83146 -20.27379 -19.74121 -18.19271 -16.99068 -16.72205 -16.24026 -15.72103 -15.27613 -14.86365 -14.56275 -14.31844 -13.99523 -13.78950 -13.52532 -13.36401 -12.99105 -12.67668 -12.41536 -12.34185 -11.99205 -11.94686 -11.78766 -11.47429 -11.31541 -11.07274 -10.88813 -10.66085 -10.37094 -9.63592 -9.06748 -8.30313 -6.10344 0.96113 1.08051 1.52091 1.68001 1.81523 2.40240 2.59813 2.77562 2.94143 3.53543 3.65554 3.75204 3.92993 4.21740 4.28067 4.34026 4.37098 4.51126 4.55100 4.61436 4.80788 4.83634 4.88354 5.01007 5.02869 5.11549 5.17247 5.22586 5.25016 5.41766 5.50488 5.60026 5.73729 5.89792 5.92939 6.30878 6.39538 6.71907 6.96985 7.09439 7.23622 8.19278 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.048729 B = 0.005019 C = 0.004782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.470294 B = 5577.774945 C = 5853.335331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.001 3.999 3 Si 1.115 2.885 4 H -0.273 1.273 5 H -0.260 1.260 6 H -0.266 1.266 7 C -0.574 4.574 8 H 0.062 0.938 9 C 0.028 3.972 10 C -0.191 4.191 11 C -0.157 4.157 12 C 0.110 3.890 13 N -0.738 5.738 14 C 0.175 3.825 15 H 0.064 0.936 16 C -0.140 4.140 17 C -0.090 4.090 18 C -0.150 4.150 19 H 0.130 0.870 20 C -0.149 4.149 21 C -0.180 4.180 22 H 0.125 0.875 23 C -0.155 4.155 24 C -0.197 4.197 25 H 0.278 0.722 26 H 0.084 0.916 27 H 0.108 0.892 28 H 0.394 0.606 29 H 0.081 0.919 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.986 -12.857 6.583 15.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.212 4.212 3 Si 0.933 3.067 4 H -0.197 1.197 5 H -0.185 1.185 6 H -0.191 1.191 7 C -0.604 4.604 8 H 0.080 0.920 9 C 0.025 3.975 10 C -0.211 4.211 11 C -0.179 4.179 12 C 0.011 3.989 13 N -0.373 5.373 14 C 0.068 3.932 15 H 0.082 0.918 16 C -0.179 4.179 17 C -0.128 4.128 18 C -0.168 4.168 19 H 0.148 0.852 20 C -0.186 4.186 21 C -0.199 4.199 22 H 0.143 0.857 23 C -0.177 4.177 24 C -0.217 4.217 25 H 0.090 0.910 26 H 0.103 0.897 27 H 0.126 0.874 28 H 0.230 0.770 29 H 0.100 0.900 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.363 -11.141 6.757 14.090 hybrid contribution 0.337 -1.709 -0.373 1.781 sum -5.026 -12.850 6.384 15.203 Atomic orbital electron populations 1.70604 1.08851 1.32587 1.34149 1.28253 0.95742 1.07158 0.90055 0.83042 0.74734 0.70151 0.78815 1.19725 1.18479 1.19135 1.20484 1.03319 0.95846 1.40743 0.91972 1.17863 0.93600 0.93489 0.92537 1.20697 1.02990 0.96838 1.00622 1.20179 1.02935 0.91527 1.03232 1.17408 0.96545 0.87055 0.97913 1.44030 1.42356 1.04570 1.46394 1.21087 0.86995 0.96599 0.88478 0.91795 1.23193 0.97045 0.97403 1.00279 1.21939 1.01248 0.92986 0.96602 1.23323 0.91550 1.02172 0.99729 0.85168 1.23031 0.96901 0.96430 1.02257 1.23444 1.06952 0.90153 0.99356 0.85738 1.20169 0.99473 0.97800 1.00283 1.20720 1.04789 0.92595 1.03627 0.91019 0.89733 0.87422 0.76973 0.89997 0.93501 0.92534 0.89964 0.89696 0.86316 0.86317 0.88595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -48.18 12.32 21.82 0.27 -47.92 16 2 C 0.00 0.06 4.92 85.23 0.42 0.48 16 3 Si 1.11 46.24 30.00 68.60 2.06 48.30 16 4 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 5 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 6 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 7 C -0.57 -33.08 8.96 23.38 0.21 -32.87 16 8 H 0.06 3.52 7.96 -2.92 -0.02 3.49 16 9 C 0.03 1.60 5.30 -21.27 -0.11 1.48 16 10 C -0.19 -10.38 7.90 22.48 0.18 -10.20 16 11 C -0.16 -7.33 9.14 22.15 0.20 -7.12 16 12 C 0.11 4.67 6.67 38.67 0.26 4.92 16 13 N -0.74 -24.13 5.23 -313.47 -1.64 -25.77 16 14 C 0.17 4.92 2.82 46.07 0.13 5.05 16 15 H 0.06 2.00 6.47 -2.39 -0.02 1.99 16 16 C -0.14 -3.70 6.61 32.01 0.21 -3.49 16 17 C -0.09 -1.92 6.59 31.79 0.21 -1.71 16 18 C -0.15 -2.70 6.94 -10.07 -0.07 -2.77 16 19 H 0.13 1.83 8.14 -2.38 -0.02 1.81 16 20 C -0.15 -2.70 9.66 30.59 0.30 -2.40 16 21 C -0.18 -3.83 6.83 -10.07 -0.07 -3.90 16 22 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 23 C -0.16 -6.83 9.82 22.15 0.22 -6.62 16 24 C -0.20 -10.03 9.74 22.48 0.22 -9.81 16 25 H 0.28 16.67 6.72 -92.71 -0.62 16.05 16 26 H 0.08 4.85 6.50 -2.91 -0.02 4.83 16 27 H 0.11 4.59 6.21 -2.91 -0.02 4.57 16 28 H 0.39 11.41 6.32 -92.71 -0.59 10.83 16 29 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.08 1.66 6.22 -2.38 -0.01 1.65 16 34 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 36 H 0.10 4.67 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -62.90 290.27 3.63 -59.27 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: 0.64 Total: 35.07 kcal Atomic # 6 Polarization: -71.26 SS G_CDS: 2.30 Total: -68.96 kcal Atomic # 7 Polarization: -72.32 SS G_CDS: -1.37 Total: -73.69 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.06 Total: 48.30 kcal Total: -62.90 3.63 -59.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304524884.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.858 kcal (2) G-P(sol) polarization free energy of solvation -62.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds