Wall clock time and date at job start Mon Mar 30 2020 05:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.31166 * 119.99872 * 2 1 4 4 Cl 1.73599 * 119.99683 * 0.27233 * 3 2 1 5 5 C 1.50706 * 120.00436 * 180.27466 * 2 1 3 6 6 N 1.46899 * 109.46789 * 274.72440 * 5 2 1 7 7 C 1.46848 * 111.00034 * 294.20649 * 6 5 2 8 8 C 1.53035 * 109.52206 * 174.16430 * 7 6 5 9 9 C 1.53120 * 109.28172 * 59.18030 * 8 7 6 10 10 C 1.50701 * 109.57689 * 182.41102 * 9 8 7 11 11 H 1.07994 * 120.00345 * 119.71799 * 10 9 8 12 12 C 1.37882 * 119.99617 * 299.70882 * 10 9 8 13 13 N 1.31513 * 119.99828 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 119.99793 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47042 * 90.00172 * 14 12 10 16 16 H 1.48498 * 109.47483 * 210.00157 * 14 12 10 17 17 H 1.48499 * 109.47341 * 330.00475 * 14 12 10 18 18 C 1.53122 * 109.15972 * 302.34731 * 9 8 7 19 19 C 1.46850 * 110.99692 * 169.99620 * 6 5 2 20 20 H 1.09001 * 109.47157 * 269.71939 * 1 2 3 21 21 H 1.08989 * 109.47708 * 29.72506 * 1 2 3 22 22 H 1.09008 * 109.47122 * 149.73041 * 1 2 3 23 23 H 1.07999 * 120.00168 * 180.28118 * 3 2 1 24 24 H 1.08999 * 109.47032 * 34.72068 * 5 2 1 25 25 H 1.08998 * 109.47488 * 154.72208 * 5 2 1 26 26 H 1.08999 * 109.46022 * 294.17437 * 7 6 5 27 27 H 1.08996 * 109.46222 * 54.14435 * 7 6 5 28 28 H 1.08999 * 109.50430 * 299.23545 * 8 7 6 29 29 H 1.09007 * 109.50486 * 179.11912 * 8 7 6 30 30 H 1.08997 * 109.52587 * 62.24692 * 9 8 7 31 31 H 0.97010 * 119.99455 * 179.97438 * 13 12 10 32 32 H 1.09007 * 109.49764 * 297.71258 * 18 9 8 33 33 H 1.09001 * 109.50281 * 177.59753 * 18 9 8 34 34 H 1.08997 * 109.46278 * 305.85348 * 19 6 5 35 35 H 1.09006 * 109.45911 * 65.83484 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1627 1.1359 0.0000 4 17 1.2946 2.6393 0.0071 5 6 2.2606 -1.3051 -0.0063 6 7 2.4066 -1.7927 1.3717 7 6 3.2597 -0.8944 2.1602 8 6 3.2714 -1.3515 3.6207 9 6 3.8009 -2.7862 3.6972 10 6 3.7598 -3.2641 5.1258 11 1 3.1677 -4.1279 5.3895 12 6 4.4784 -2.5985 6.0963 13 7 5.1993 -1.5464 5.7752 14 14 4.4281 -3.1913 7.8670 15 1 5.5156 -4.1776 8.0899 16 1 4.6129 -2.0358 8.7813 17 1 3.1159 -3.8317 8.1375 18 6 2.9238 -3.6926 2.8290 19 6 2.9220 -3.1676 1.3915 20 1 -0.3633 -0.0050 1.0277 21 1 -0.3634 0.8923 -0.5095 22 1 -0.3634 -0.8876 -0.5181 23 1 3.2427 1.1360 -0.0046 24 1 1.7108 -2.0393 -0.5951 25 1 3.2470 -1.1530 -0.4443 26 1 4.2750 -0.9175 1.7643 27 1 2.8698 0.1217 2.1008 28 1 2.2584 -1.3156 4.0214 29 1 3.9171 -0.6938 4.2027 30 1 4.8277 -2.8155 3.3327 31 1 5.7045 -1.0780 6.4581 32 1 1.9052 -3.6935 3.2173 33 1 3.3210 -4.7075 2.8454 34 1 2.2869 -3.8025 0.7738 35 1 3.9390 -3.1799 0.9993 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306788168.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:58 Heat of formation + Delta-G solvation = -5.034759 kcal Electronic energy + Delta-G solvation = -15847.623273 eV Core-core repulsion = 13292.029621 eV Total energy + Delta-G solvation = -2555.593652 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 243.109 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.63685 -36.77701 -35.19852 -33.15362 -30.94642 -29.81936 -27.28106 -26.65278 -24.29876 -22.06240 -21.37760 -18.70446 -18.48141 -16.37908 -15.53266 -15.36846 -14.95900 -14.45445 -14.07245 -13.31203 -13.19062 -12.83129 -12.53596 -12.30690 -11.94936 -11.80108 -11.58401 -11.50613 -11.24963 -10.94283 -10.73352 -10.53883 -10.42404 -10.22009 -9.96793 -9.42607 -8.99761 -8.79468 -8.66691 -8.28164 -7.79341 -5.95947 -4.01171 1.91762 2.42412 3.32333 3.39233 3.42747 4.46071 4.51508 4.84064 4.95859 5.34349 5.48354 5.62073 5.62381 5.71547 5.77756 5.88227 5.98055 6.09072 6.19540 6.29046 6.31600 6.54316 6.61350 6.62732 6.84891 7.07217 7.15712 7.43139 7.59924 7.65491 7.83219 8.05743 8.16914 8.49647 9.02475 9.63236 11.10308 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.032065 B = 0.005557 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.013338 B = 5037.426987 C = 5570.830101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.088 4.088 3 C -0.119 4.119 4 Cl -0.100 7.100 5 C 0.091 3.909 6 N -0.529 5.529 7 C 0.052 3.948 8 C -0.102 4.102 9 C 0.047 3.953 10 C -0.510 4.510 11 H 0.054 0.946 12 C 0.061 3.939 13 N -0.892 5.892 14 Si 0.890 3.110 15 H -0.282 1.282 16 H -0.287 1.287 17 H -0.275 1.275 18 C -0.106 4.106 19 C 0.061 3.939 20 H 0.079 0.921 21 H 0.066 0.934 22 H 0.064 0.936 23 H 0.142 0.858 24 H 0.081 0.919 25 H 0.036 0.964 26 H 0.021 0.979 27 H 0.060 0.940 28 H 0.043 0.957 29 H 0.092 0.908 30 H 0.020 0.980 31 H 0.259 0.741 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.257 3.610 -12.366 14.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.089 4.089 3 C -0.164 4.164 4 Cl -0.071 7.071 5 C -0.037 4.037 6 N -0.254 5.254 7 C -0.075 4.075 8 C -0.141 4.141 9 C 0.029 3.971 10 C -0.548 4.548 11 H 0.072 0.928 12 C -0.140 4.140 13 N -0.532 5.532 14 Si 0.718 3.282 15 H -0.208 1.208 16 H -0.213 1.213 17 H -0.200 1.200 18 C -0.144 4.144 19 C -0.066 4.066 20 H 0.097 0.903 21 H 0.085 0.915 22 H 0.083 0.917 23 H 0.160 0.840 24 H 0.100 0.900 25 H 0.054 0.946 26 H 0.039 0.961 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.110 0.890 30 H 0.038 0.962 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -6.668 3.852 -12.060 14.309 hybrid contribution 0.889 -0.127 0.636 1.101 sum -5.778 3.725 -11.424 13.333 Atomic orbital electron populations 1.20869 0.91092 1.02329 1.03136 1.21847 0.97065 0.93769 0.96256 1.24222 0.97839 0.85370 1.08996 1.98323 1.77515 1.34453 1.96842 1.21064 0.97607 0.93097 0.91978 1.62008 1.51580 1.02809 1.09050 1.22376 0.92853 0.95343 0.96913 1.21644 1.00800 1.00750 0.90873 1.18692 0.93660 0.90861 0.93923 1.21204 1.28016 1.12787 0.92833 0.92758 1.24968 0.95290 0.95004 0.98754 1.69879 1.30471 1.19465 1.33335 0.86633 0.78340 0.78250 0.85004 1.20814 1.21298 1.19951 1.21682 1.01270 0.98808 0.92639 1.22135 0.96674 0.88434 0.99384 0.90282 0.91497 0.91675 0.84015 0.90042 0.94568 0.96085 0.92193 0.93841 0.88962 0.96215 0.93110 0.92427 0.93111 0.92341 0.95747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 9.59 36.00 0.35 -1.04 16 2 C -0.09 -1.14 4.97 -101.11 -0.50 -1.64 16 3 C -0.12 -1.53 8.85 28.97 0.26 -1.28 16 4 Cl -0.10 -1.24 27.23 -51.86 -1.41 -2.66 16 5 C 0.09 1.25 5.15 -4.97 -0.03 1.22 16 6 N -0.53 -9.16 4.65 -236.11 -1.10 -10.26 16 7 C 0.05 1.02 5.20 -3.83 -0.02 1.00 16 8 C -0.10 -2.42 5.12 -26.65 -0.14 -2.56 16 9 C 0.05 1.17 2.16 -91.65 -0.20 0.97 16 10 C -0.51 -14.03 8.57 -34.44 -0.29 -14.32 16 11 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 12 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16 13 N -0.89 -25.50 11.37 55.43 0.63 -24.87 16 14 Si 0.89 21.37 29.54 -169.99 -5.02 16.34 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 18 C -0.11 -2.20 5.32 -26.65 -0.14 -2.35 16 19 C 0.06 1.07 5.46 -3.83 -0.02 1.05 16 20 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 21 H 0.07 0.73 6.73 -51.94 -0.35 0.38 16 22 H 0.06 0.68 8.08 -51.92 -0.42 0.26 16 23 H 0.14 1.76 7.99 -52.49 -0.42 1.34 16 24 H 0.08 0.99 7.94 -51.93 -0.41 0.58 16 25 H 0.04 0.49 7.97 -51.93 -0.41 0.07 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 1.11 6.06 -51.93 -0.31 0.79 16 28 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.09 2.44 6.17 -51.93 -0.32 2.12 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.88 8.01 -51.93 -0.42 0.47 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 291.81 15.07 4.40 4.40 Total: -1.00 -27.83 291.81 -8.90 -36.73 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -5.57 Total: -2.34 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -0.83 Total: -17.36 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: -0.47 Total: -35.12 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -1.41 Total: -2.66 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.83 -8.90 -36.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306788168.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.694 kcal (2) G-P(sol) polarization free energy of solvation -27.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds