Wall clock time and date at job start Mon Mar 30 2020 05:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.31166 * 119.99872 * 2 1 4 4 Cl 1.73599 * 119.99683 * 0.27233 * 3 2 1 5 5 C 1.50706 * 120.00436 * 180.27466 * 2 1 3 6 6 N 1.46899 * 109.46789 * 274.72440 * 5 2 1 7 7 C 1.46848 * 111.00034 * 294.20649 * 6 5 2 8 8 C 1.53035 * 109.52206 * 174.16430 * 7 6 5 9 9 C 1.53120 * 109.28172 * 59.18030 * 8 7 6 10 10 C 1.50701 * 109.57689 * 182.41102 * 9 8 7 11 11 H 1.07994 * 120.00345 * 119.71799 * 10 9 8 12 12 C 1.37882 * 119.99617 * 299.70882 * 10 9 8 13 13 N 1.31513 * 119.99828 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 119.99793 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47042 * 90.00172 * 14 12 10 16 16 H 1.48498 * 109.47483 * 210.00157 * 14 12 10 17 17 H 1.48499 * 109.47341 * 330.00475 * 14 12 10 18 18 C 1.53122 * 109.15972 * 302.34731 * 9 8 7 19 19 C 1.46850 * 110.99692 * 169.99620 * 6 5 2 20 20 H 1.09001 * 109.47157 * 269.71939 * 1 2 3 21 21 H 1.08989 * 109.47708 * 29.72506 * 1 2 3 22 22 H 1.09008 * 109.47122 * 149.73041 * 1 2 3 23 23 H 1.07999 * 120.00168 * 180.28118 * 3 2 1 24 24 H 1.08999 * 109.47032 * 34.72068 * 5 2 1 25 25 H 1.08998 * 109.47488 * 154.72208 * 5 2 1 26 26 H 1.08999 * 109.46022 * 294.17437 * 7 6 5 27 27 H 1.08996 * 109.46222 * 54.14435 * 7 6 5 28 28 H 1.08999 * 109.50430 * 299.23545 * 8 7 6 29 29 H 1.09007 * 109.50486 * 179.11912 * 8 7 6 30 30 H 1.08997 * 109.52587 * 62.24692 * 9 8 7 31 31 H 0.97010 * 119.99455 * 179.97438 * 13 12 10 32 32 H 1.09007 * 109.49764 * 297.71258 * 18 9 8 33 33 H 1.09001 * 109.50281 * 177.59753 * 18 9 8 34 34 H 1.08997 * 109.46278 * 305.85348 * 19 6 5 35 35 H 1.09006 * 109.45911 * 65.83484 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1627 1.1359 0.0000 4 17 1.2946 2.6393 0.0071 5 6 2.2606 -1.3051 -0.0063 6 7 2.4066 -1.7927 1.3717 7 6 3.2597 -0.8944 2.1602 8 6 3.2714 -1.3515 3.6207 9 6 3.8009 -2.7862 3.6972 10 6 3.7598 -3.2641 5.1258 11 1 3.1677 -4.1279 5.3895 12 6 4.4784 -2.5985 6.0963 13 7 5.1993 -1.5464 5.7752 14 14 4.4281 -3.1913 7.8670 15 1 5.5156 -4.1776 8.0899 16 1 4.6129 -2.0358 8.7813 17 1 3.1159 -3.8317 8.1375 18 6 2.9238 -3.6926 2.8290 19 6 2.9220 -3.1676 1.3915 20 1 -0.3633 -0.0050 1.0277 21 1 -0.3634 0.8923 -0.5095 22 1 -0.3634 -0.8876 -0.5181 23 1 3.2427 1.1360 -0.0046 24 1 1.7108 -2.0393 -0.5951 25 1 3.2470 -1.1530 -0.4443 26 1 4.2750 -0.9175 1.7643 27 1 2.8698 0.1217 2.1008 28 1 2.2584 -1.3156 4.0214 29 1 3.9171 -0.6938 4.2027 30 1 4.8277 -2.8155 3.3327 31 1 5.7045 -1.0780 6.4581 32 1 1.9052 -3.6935 3.2173 33 1 3.3210 -4.7075 2.8454 34 1 2.2869 -3.8025 0.7738 35 1 3.9390 -3.1799 0.9993 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306788168.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:58 Heat of formation + Delta-G solvation = -20.537756 kcal Electronic energy + Delta-G solvation = -15848.295533 eV Core-core repulsion = 13292.029621 eV Total energy + Delta-G solvation = -2556.265913 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 243.109 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.06627 -37.88755 -36.53085 -34.84012 -32.69110 -31.46571 -28.46232 -28.06145 -25.95835 -23.70353 -23.03960 -20.34540 -19.62177 -18.42495 -16.95418 -16.60391 -16.30449 -16.07016 -15.45810 -14.83256 -14.50776 -14.49620 -14.17996 -13.93779 -13.08527 -12.96030 -12.85172 -12.84086 -12.76767 -12.60474 -12.45724 -12.10957 -11.97474 -11.84374 -11.53023 -11.33338 -10.80453 -10.64473 -10.37174 -9.81544 -9.16707 -8.07471 -6.20592 0.89342 1.41016 1.42189 1.42677 1.52231 2.44340 3.15991 3.20226 3.85489 3.93555 4.23201 4.31945 4.33876 4.52142 4.56419 4.66992 4.75025 4.80420 4.87825 4.91704 4.99223 5.04341 5.11449 5.24602 5.33049 5.36828 5.56598 5.58038 5.63916 6.00950 6.03190 6.27726 6.32239 6.41821 6.91416 7.47272 8.97076 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.032065 B = 0.005557 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.013338 B = 5037.426987 C = 5570.830101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.094 4.094 3 C -0.123 4.123 4 Cl -0.097 7.097 5 C 0.092 3.908 6 N -0.536 5.536 7 C 0.068 3.932 8 C -0.093 4.093 9 C 0.043 3.957 10 C -0.532 4.532 11 H 0.051 0.949 12 C 0.012 3.988 13 N -0.918 5.918 14 Si 0.952 3.048 15 H -0.276 1.276 16 H -0.284 1.284 17 H -0.269 1.269 18 C -0.100 4.100 19 C 0.067 3.933 20 H 0.066 0.934 21 H 0.073 0.927 22 H 0.080 0.920 23 H 0.145 0.855 24 H 0.106 0.894 25 H 0.043 0.957 26 H 0.014 0.986 27 H 0.070 0.930 28 H 0.028 0.972 29 H 0.058 0.942 30 H -0.012 1.012 31 H 0.259 0.741 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.094 0.906 35 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.218 3.134 -13.433 15.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.095 4.095 3 C -0.168 4.168 4 Cl -0.069 7.069 5 C -0.035 4.035 6 N -0.261 5.261 7 C -0.060 4.060 8 C -0.132 4.132 9 C 0.024 3.976 10 C -0.571 4.571 11 H 0.069 0.931 12 C -0.187 4.187 13 N -0.558 5.558 14 Si 0.778 3.222 15 H -0.202 1.202 16 H -0.210 1.210 17 H -0.193 1.193 18 C -0.138 4.138 19 C -0.060 4.060 20 H 0.085 0.915 21 H 0.091 0.909 22 H 0.099 0.901 23 H 0.163 0.837 24 H 0.125 0.875 25 H 0.062 0.938 26 H 0.033 0.967 27 H 0.088 0.912 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.006 0.994 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -7.638 3.370 -13.142 15.569 hybrid contribution 1.192 0.036 0.951 1.526 sum -6.445 3.405 -12.191 14.204 Atomic orbital electron populations 1.20869 0.90177 1.03502 1.02644 1.21930 0.97752 0.93448 0.96409 1.24350 0.98152 0.85600 1.08711 1.98326 1.77471 1.34304 1.96807 1.21155 0.98544 0.94009 0.89810 1.61920 1.50535 1.02349 1.11279 1.22065 0.93191 0.96248 0.94510 1.21393 0.98708 0.99564 0.93521 1.18677 0.92823 0.92523 0.93560 1.21600 1.28052 1.12832 0.94577 0.93085 1.25738 0.95016 0.95141 1.02758 1.70021 1.31005 1.20340 1.34457 0.85647 0.78562 0.77832 0.80172 1.20150 1.20999 1.19339 1.21548 0.99694 0.98289 0.94259 1.22075 0.97648 0.88993 0.97332 0.91487 0.90851 0.90104 0.83732 0.87539 0.93839 0.96741 0.91193 0.95350 0.92328 0.99404 0.93149 0.93035 0.92676 0.88776 0.95804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 9.59 71.23 0.68 -1.74 16 2 C -0.09 -2.21 4.97 -16.65 -0.08 -2.29 16 3 C -0.12 -2.93 8.85 67.62 0.60 -2.34 16 4 Cl -0.10 -2.28 27.23 -2.72 -0.07 -2.36 16 5 C 0.09 2.25 5.15 85.56 0.44 2.69 16 6 N -0.54 -17.43 4.65 -900.92 -4.19 -21.62 16 7 C 0.07 2.60 5.20 86.32 0.45 3.05 16 8 C -0.09 -4.52 5.12 30.65 0.16 -4.37 16 9 C 0.04 2.16 2.16 -11.46 -0.02 2.14 16 10 C -0.53 -29.82 8.57 25.60 0.22 -29.60 16 11 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 12 C 0.01 0.66 5.31 84.66 0.45 1.11 16 13 N -0.92 -53.78 11.37 21.45 0.24 -53.54 16 14 Si 0.95 44.19 29.54 68.60 2.03 46.22 16 15 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 16 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 17 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 18 C -0.10 -4.09 5.32 30.65 0.16 -3.92 16 19 C 0.07 2.18 5.46 86.33 0.47 2.65 16 20 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 21 H 0.07 1.43 6.73 -2.39 -0.02 1.41 16 22 H 0.08 1.43 8.08 -2.38 -0.02 1.41 16 23 H 0.15 3.34 7.99 -2.91 -0.02 3.32 16 24 H 0.11 2.12 7.94 -2.39 -0.02 2.10 16 25 H 0.04 1.03 7.97 -2.39 -0.02 1.01 16 26 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.07 2.53 6.06 -2.39 -0.01 2.52 16 28 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.06 3.21 6.17 -2.38 -0.01 3.20 16 30 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 31 H 0.26 14.48 8.31 -92.70 -0.77 13.70 16 32 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.09 2.46 8.01 -2.39 -0.02 2.44 16 35 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 Total: -1.00 -60.19 291.81 2.58 -57.61 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: 1.05 Total: 6.30 kcal Atomic # 6 Polarization: -36.14 SS G_CDS: 3.52 Total: -32.62 kcal Atomic # 7 Polarization: -71.21 SS G_CDS: -3.94 Total: -75.15 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 17 Polarization: -2.28 SS G_CDS: -0.07 Total: -2.36 kcal Total: -60.19 2.58 -57.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306788168.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.072 kcal (2) G-P(sol) polarization free energy of solvation -60.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds