Wall clock time and date at job start Mon Mar 30 2020 05:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.31160 * 119.99827 * 2 1 4 4 Cl 1.73606 * 120.00116 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00222 * 179.97438 * 2 1 3 6 6 N 1.46895 * 109.47496 * 274.99783 * 5 2 1 7 7 C 1.46853 * 110.99660 * 66.04610 * 6 5 2 8 8 C 1.53036 * 109.52427 * 185.83753 * 7 6 5 9 9 C 1.53117 * 109.27818 * 300.82356 * 8 7 6 10 10 C 1.53124 * 109.16094 * 57.65433 * 9 8 7 11 11 H 1.09001 * 109.50366 * 62.32552 * 10 9 8 12 12 C 1.50700 * 109.50099 * 182.40293 * 10 9 8 13 13 H 1.07999 * 119.99988 * 119.99737 * 12 10 9 14 14 C 1.37885 * 120.00047 * 299.99917 * 12 10 9 15 15 N 1.31516 * 119.99913 * 180.02562 * 14 12 10 16 16 Si 1.86805 * 119.99854 * 359.72512 * 14 12 10 17 17 H 1.48498 * 109.46909 * 90.00086 * 16 14 12 18 18 H 1.48497 * 109.46701 * 209.99996 * 16 14 12 19 19 H 1.48500 * 109.46867 * 330.00101 * 16 14 12 20 20 C 1.46844 * 111.00225 * 190.25382 * 6 5 2 21 21 H 1.08995 * 109.47209 * 269.99540 * 1 2 3 22 22 H 1.09000 * 109.47320 * 30.00357 * 1 2 3 23 23 H 1.09003 * 109.46784 * 150.00184 * 1 2 3 24 24 H 1.08002 * 120.00107 * 180.02562 * 3 2 1 25 25 H 1.09000 * 109.46951 * 154.99963 * 5 2 1 26 26 H 1.08994 * 109.47041 * 35.00616 * 5 2 1 27 27 H 1.09005 * 109.45879 * 65.82159 * 7 6 5 28 28 H 1.08999 * 109.45163 * 305.85348 * 7 6 5 29 29 H 1.08993 * 109.50219 * 180.87630 * 8 7 6 30 30 H 1.09003 * 109.49810 * 60.76807 * 8 7 6 31 31 H 1.08999 * 109.52365 * 297.74604 * 9 8 7 32 32 H 1.09005 * 109.56853 * 177.58685 * 9 8 7 33 33 H 0.97001 * 119.99646 * 180.02562 * 15 14 12 34 34 H 1.09002 * 109.46093 * 54.15330 * 20 6 5 35 35 H 1.08996 * 109.46666 * 294.18230 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1627 1.1359 0.0000 4 17 1.2947 2.6394 -0.0007 5 6 2.2605 -1.3051 0.0006 6 7 2.4009 -1.7889 1.3804 7 6 1.0939 -2.1399 1.9505 8 6 1.2605 -2.4996 3.4287 9 6 2.2274 -3.6800 3.5558 10 6 3.5651 -3.3056 2.9116 11 1 4.0018 -2.4608 3.4443 12 6 4.5034 -4.4829 2.9801 13 1 4.8970 -4.9132 2.0711 14 6 4.8594 -5.0106 4.2032 15 7 5.6786 -6.0377 4.2629 16 14 4.1846 -4.2614 5.7757 17 1 2.9097 -4.9323 6.1362 18 1 5.1681 -4.4448 6.8731 19 1 3.9395 -2.8116 5.5678 20 6 3.3316 -2.9227 1.4485 21 1 -0.3633 -0.0001 1.0276 22 1 -0.3634 0.8899 -0.5139 23 1 -0.3633 -0.8900 -0.5138 24 1 3.2427 1.1360 -0.0004 25 1 3.2487 -1.1542 -0.4338 26 1 1.7132 -2.0408 -0.5886 27 1 0.6809 -2.9937 1.4133 28 1 0.4173 -1.2904 1.8574 29 1 0.2927 -2.7750 3.8475 30 1 1.6605 -1.6415 3.9690 31 1 1.8094 -4.5495 3.0485 32 1 2.3829 -3.9127 4.6093 33 1 5.9287 -6.4092 5.1233 34 1 4.2802 -2.6418 0.9908 35 1 2.9082 -3.7728 0.9137 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307124348.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:02 Heat of formation + Delta-G solvation = -14.024482 kcal Electronic energy + Delta-G solvation = -15920.575593 eV Core-core repulsion = 13364.592117 eV Total energy + Delta-G solvation = -2555.983476 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 243.109 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.20143 -37.91062 -36.55398 -34.76862 -33.24140 -32.01976 -28.51252 -27.35710 -26.68273 -23.83601 -22.89103 -20.48891 -19.62028 -18.81644 -17.27264 -16.65058 -16.22926 -16.13392 -15.30753 -15.12057 -14.87748 -14.74388 -14.30126 -13.92949 -13.64165 -13.07610 -12.90164 -12.89664 -12.85297 -12.55419 -12.39919 -12.02984 -11.87143 -11.73631 -11.49818 -11.43535 -11.01249 -10.79347 -10.61813 -9.77067 -9.19073 -8.30305 -6.33528 0.93951 1.29872 1.36665 1.44726 1.47503 2.32914 3.05899 3.14410 3.87814 3.94617 4.04586 4.13945 4.27775 4.35724 4.47549 4.59250 4.66589 4.73741 4.75327 4.82641 4.84869 4.96535 4.99861 5.12258 5.16216 5.24465 5.36279 5.45385 5.59557 5.64333 5.73460 6.15074 6.23901 6.35098 6.74061 7.32399 8.86532 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.040184 B = 0.005430 C = 0.005357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.631382 B = 5155.682770 C = 5226.004245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.105 4.105 3 C -0.101 4.101 4 Cl -0.098 7.098 5 C 0.094 3.906 6 N -0.542 5.542 7 C 0.055 3.945 8 C -0.116 4.116 9 C -0.123 4.123 10 C 0.020 3.980 11 H 0.024 0.976 12 C -0.518 4.518 13 H 0.034 0.966 14 C 0.014 3.986 15 N -0.951 5.951 16 Si 0.950 3.050 17 H -0.267 1.267 18 H -0.300 1.300 19 H -0.249 1.249 20 C 0.088 3.912 21 H 0.079 0.921 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.151 0.849 25 H 0.084 0.916 26 H 0.052 0.948 27 H 0.032 0.968 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.033 0.967 33 H 0.265 0.735 34 H 0.062 0.938 35 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.732 14.421 -7.752 20.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.106 4.106 3 C -0.147 4.147 4 Cl -0.070 7.070 5 C -0.034 4.034 6 N -0.267 5.267 7 C -0.072 4.072 8 C -0.153 4.153 9 C -0.160 4.160 10 C 0.000 4.000 11 H 0.042 0.958 12 C -0.557 4.557 13 H 0.052 0.948 14 C -0.183 4.183 15 N -0.591 5.591 16 Si 0.777 3.223 17 H -0.193 1.193 18 H -0.228 1.228 19 H -0.173 1.173 20 C -0.039 4.039 21 H 0.097 0.903 22 H 0.095 0.905 23 H 0.093 0.907 24 H 0.169 0.831 25 H 0.103 0.897 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.117 0.883 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -12.521 14.810 -7.384 20.752 hybrid contribution 0.073 -0.978 0.367 1.047 sum -12.448 13.833 -7.018 19.888 Atomic orbital electron populations 1.21095 0.90452 1.03661 1.03024 1.21785 0.97173 0.93457 0.98208 1.24339 0.98395 0.85141 1.06799 1.98330 1.77565 1.34377 1.96729 1.21056 1.00128 0.92919 0.89278 1.62008 1.11181 1.34770 1.18744 1.22284 0.90345 1.00080 0.94476 1.21638 0.99234 0.97651 0.96804 1.21925 0.97150 0.98089 0.98851 1.19073 0.92602 0.94539 0.93742 0.95825 1.21342 1.26938 1.14409 0.92987 0.94753 1.25820 0.94940 0.94916 1.02600 1.70046 1.36816 1.25829 1.26422 0.85817 0.77301 0.80616 0.78529 1.19314 1.22820 1.17311 1.21796 0.95026 0.90081 0.97021 0.90261 0.90544 0.90733 0.83148 0.89719 0.92965 0.95000 0.88323 0.89999 0.92098 0.93228 0.94858 0.92590 0.91971 0.96193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 8.48 71.23 0.60 -1.57 16 2 C -0.10 -2.18 5.12 -16.65 -0.09 -2.26 16 3 C -0.10 -2.09 10.40 67.62 0.70 -1.39 16 4 Cl -0.10 -1.95 27.23 -2.72 -0.07 -2.03 16 5 C 0.09 2.27 5.15 85.56 0.44 2.71 16 6 N -0.54 -16.84 4.65 -900.95 -4.19 -21.03 16 7 C 0.06 1.55 5.16 86.32 0.45 2.00 16 8 C -0.12 -3.68 6.09 30.65 0.19 -3.49 16 9 C -0.12 -5.07 4.74 30.67 0.15 -4.92 16 10 C 0.02 0.91 1.85 -11.49 -0.02 0.89 16 11 H 0.02 1.15 7.20 -2.39 -0.02 1.13 16 12 C -0.52 -29.58 9.14 25.60 0.23 -29.34 16 13 H 0.03 2.15 7.99 -2.91 -0.02 2.13 16 14 C 0.01 0.83 5.45 84.66 0.46 1.29 16 15 N -0.95 -59.85 13.96 21.45 0.30 -59.55 16 16 Si 0.95 45.75 24.36 68.60 1.67 47.42 16 17 H -0.27 -12.20 6.88 99.48 0.68 -11.52 16 18 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 19 H -0.25 -11.31 6.53 99.48 0.65 -10.66 16 20 C 0.09 3.42 4.68 86.33 0.40 3.83 16 21 H 0.08 1.36 6.47 -2.39 -0.02 1.34 16 22 H 0.08 1.24 6.74 -2.39 -0.02 1.23 16 23 H 0.07 1.15 8.08 -2.39 -0.02 1.13 16 24 H 0.15 2.97 7.99 -2.91 -0.02 2.94 16 25 H 0.08 1.99 7.83 -2.39 -0.02 1.97 16 26 H 0.05 1.19 8.08 -2.39 -0.02 1.18 16 27 H 0.03 0.88 8.14 -2.38 -0.02 0.87 16 28 H 0.10 2.27 4.65 -2.39 -0.01 2.26 16 29 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.03 1.45 3.36 -2.38 -0.01 1.44 16 33 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 34 H 0.06 2.43 8.01 -2.39 -0.02 2.41 16 35 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -63.69 282.41 2.21 -61.48 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: 0.98 Total: 5.97 kcal Atomic # 6 Polarization: -35.78 SS G_CDS: 3.52 Total: -32.26 kcal Atomic # 7 Polarization: -76.69 SS G_CDS: -3.89 Total: -80.58 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.67 Total: 47.42 kcal Atomic # 17 Polarization: -1.95 SS G_CDS: -0.07 Total: -2.03 kcal Total: -63.69 2.21 -61.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307124348.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.456 kcal (2) G-P(sol) polarization free energy of solvation -63.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds