Wall clock time and date at job start Mon Mar 30 2020 05:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.31163 * 119.99670 * 2 1 4 4 Cl 1.73602 * 119.99979 * 0.02562 * 3 2 1 5 5 C 1.50692 * 120.00090 * 179.97438 * 2 1 3 6 6 N 1.46898 * 109.47254 * 275.00151 * 5 2 1 7 7 C 1.46846 * 110.99964 * 294.21182 * 6 5 2 8 8 C 1.53032 * 109.52443 * 174.16225 * 7 6 5 9 9 C 1.53123 * 109.28121 * 59.17535 * 8 7 6 10 10 C 1.53124 * 109.16220 * 302.35028 * 9 8 7 11 11 H 1.08993 * 109.50112 * 297.71243 * 10 9 8 12 12 C 1.50694 * 109.50452 * 177.59212 * 10 9 8 13 13 H 1.07996 * 119.99999 * 240.20030 * 12 10 9 14 14 C 1.37881 * 119.99747 * 60.19356 * 12 10 9 15 15 N 1.31510 * 120.00151 * 0.02562 * 14 12 10 16 16 Si 1.86805 * 119.99626 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47293 * 60.00150 * 16 14 12 18 18 H 1.48502 * 109.46989 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47243 * 300.00243 * 16 14 12 20 20 C 1.46846 * 111.00056 * 170.00214 * 6 5 2 21 21 H 1.08996 * 109.46956 * 269.99685 * 1 2 3 22 22 H 1.09001 * 109.46892 * 30.00447 * 1 2 3 23 23 H 1.09006 * 109.46885 * 150.00026 * 1 2 3 24 24 H 1.07997 * 119.99717 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47122 * 155.00128 * 5 2 1 26 26 H 1.09003 * 109.47471 * 35.00819 * 5 2 1 27 27 H 1.09009 * 109.46169 * 294.17270 * 7 6 5 28 28 H 1.08995 * 109.46611 * 54.14126 * 7 6 5 29 29 H 1.09001 * 109.50949 * 179.12117 * 8 7 6 30 30 H 1.09000 * 109.50361 * 299.23864 * 8 7 6 31 31 H 1.09001 * 109.51952 * 62.25288 * 9 8 7 32 32 H 1.09002 * 109.52604 * 182.38110 * 9 8 7 33 33 H 0.97002 * 119.99580 * 179.97438 * 15 14 12 34 34 H 1.09008 * 109.46456 * 305.85644 * 20 6 5 35 35 H 1.09003 * 109.46474 * 65.82149 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1628 1.1359 0.0000 4 17 1.2947 2.6393 0.0007 5 6 2.2605 -1.3050 0.0006 6 7 2.4008 -1.7889 1.3805 7 6 3.2506 -0.8884 2.1700 8 6 3.2562 -1.3414 3.6318 9 6 3.7853 -2.7759 3.7145 10 6 2.9118 -3.6847 2.8452 11 1 1.8917 -3.6845 3.2291 12 6 3.4609 -5.0878 2.8740 13 1 3.7812 -5.5612 1.9577 14 6 3.5544 -5.7670 4.0702 15 7 3.1639 -5.1906 5.1860 16 14 4.2344 -7.5065 4.1058 17 1 5.6248 -7.5053 3.5843 18 1 4.2294 -8.0115 5.5023 19 1 3.3890 -8.3859 3.2590 20 6 2.9162 -3.1637 1.4063 21 1 -0.3633 -0.0001 1.0276 22 1 -0.3633 0.8900 -0.5139 23 1 -0.3633 -0.8900 -0.5139 24 1 3.2428 1.1360 0.0004 25 1 3.2488 -1.1542 -0.4338 26 1 1.7133 -2.0409 -0.5887 27 1 4.2676 -0.9125 1.7785 28 1 2.8610 0.1276 2.1062 29 1 3.8994 -0.6821 4.2147 30 1 2.2415 -1.3044 4.0282 31 1 4.8137 -2.8061 3.3544 32 1 3.7514 -3.1176 4.7490 33 1 3.2294 -5.6687 6.0274 34 1 2.2836 -3.8004 0.7876 35 1 3.9347 -3.1771 1.0182 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307124349.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:05 Heat of formation + Delta-G solvation = -5.285912 kcal Electronic energy + Delta-G solvation = -15833.438506 eV Core-core repulsion = 13277.833963 eV Total energy + Delta-G solvation = -2555.604543 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 243.109 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.63081 -36.80631 -35.18733 -33.02786 -31.32907 -29.83945 -27.26408 -25.94322 -24.90370 -22.01026 -21.34233 -18.75059 -18.46965 -16.41876 -15.52963 -15.21723 -14.94003 -14.51100 -13.97805 -13.44516 -13.17160 -12.90901 -12.55340 -12.24638 -11.96731 -11.79847 -11.77025 -11.38098 -11.28087 -10.93672 -10.68696 -10.68363 -10.57830 -10.13054 -9.84708 -9.48094 -9.09588 -8.79692 -8.72022 -8.30429 -7.71608 -5.97690 -4.04169 1.89407 2.38129 3.31924 3.36906 3.39053 4.40050 4.60701 4.83407 4.95618 5.32361 5.50263 5.63388 5.65591 5.73608 5.81521 5.83083 5.99564 6.07047 6.23670 6.30024 6.36236 6.48544 6.55272 6.70865 6.73861 6.94400 7.20694 7.37654 7.61760 7.72795 7.77875 8.07247 8.16703 8.46974 8.99623 9.60164 11.08296 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.053232 B = 0.004913 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.872762 B = 5697.901780 C = 5928.331635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.082 4.082 3 C -0.126 4.126 4 Cl -0.101 7.101 5 C 0.090 3.910 6 N -0.532 5.532 7 C 0.058 3.942 8 C -0.116 4.116 9 C -0.111 4.111 10 C 0.056 3.944 11 H 0.035 0.965 12 C -0.516 4.516 13 H 0.053 0.947 14 C 0.064 3.936 15 N -0.888 5.888 16 Si 0.890 3.110 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.068 3.932 21 H 0.079 0.921 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.141 0.859 25 H 0.036 0.964 26 H 0.085 0.915 27 H 0.022 0.978 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.060 0.940 31 H 0.029 0.971 32 H 0.090 0.910 33 H 0.260 0.740 34 H 0.060 0.940 35 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.309 11.238 -8.910 14.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.084 4.084 3 C -0.171 4.171 4 Cl -0.073 7.073 5 C -0.038 4.038 6 N -0.256 5.256 7 C -0.070 4.070 8 C -0.154 4.154 9 C -0.149 4.149 10 C 0.037 3.963 11 H 0.053 0.947 12 C -0.555 4.555 13 H 0.071 0.929 14 C -0.138 4.138 15 N -0.527 5.527 16 Si 0.718 3.282 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.058 4.058 21 H 0.098 0.902 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.159 0.841 25 H 0.054 0.946 26 H 0.103 0.897 27 H 0.040 0.960 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.048 0.952 32 H 0.109 0.891 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -2.857 11.308 -8.498 14.431 hybrid contribution 1.269 -0.842 -0.290 1.550 sum -1.587 10.466 -8.787 13.758 Atomic orbital electron populations 1.20889 0.91043 1.02466 1.03168 1.21942 0.97189 0.93857 0.95401 1.24185 0.97691 0.85321 1.09924 1.98322 1.77570 1.34506 1.96910 1.21085 0.97577 0.93009 0.92156 1.62003 1.51303 1.03595 1.08720 1.22126 0.93730 0.95754 0.95380 1.21662 1.01116 0.99066 0.93573 1.21662 0.97426 0.91295 1.04502 1.18656 0.96661 0.93040 0.87948 0.94721 1.21100 1.42331 0.98776 0.93311 0.92905 1.24927 0.95345 0.97791 0.95692 1.69882 1.47461 1.37089 0.98231 0.86690 0.79514 0.85001 0.76949 1.20394 1.21306 1.20299 1.22346 0.96063 0.85750 1.01681 0.90247 0.91517 0.91458 0.84137 0.94635 0.89709 0.96028 0.92002 0.93539 0.92086 0.95205 0.89119 0.92983 0.92139 0.96215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 9.59 36.01 0.35 -1.07 16 2 C -0.08 -1.06 4.97 -101.11 -0.50 -1.56 16 3 C -0.13 -1.53 8.85 28.97 0.26 -1.27 16 4 Cl -0.10 -1.18 27.23 -51.86 -1.41 -2.59 16 5 C 0.09 1.29 5.14 -4.98 -0.03 1.27 16 6 N -0.53 -9.53 4.65 -236.12 -1.10 -10.62 16 7 C 0.06 1.01 5.20 -3.84 -0.02 0.99 16 8 C -0.12 -2.28 6.09 -26.65 -0.16 -2.44 16 9 C -0.11 -2.61 5.03 -26.60 -0.13 -2.74 16 10 C 0.06 1.38 2.26 -91.69 -0.21 1.17 16 11 H 0.03 0.96 8.14 -51.93 -0.42 0.53 16 12 C -0.52 -14.01 8.56 -34.44 -0.29 -14.31 16 13 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 14 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 15 N -0.89 -25.21 11.37 55.43 0.63 -24.58 16 16 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 C 0.07 1.41 4.68 -3.84 -0.02 1.39 16 21 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 22 H 0.07 0.72 6.74 -51.93 -0.35 0.37 16 23 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 24 H 0.14 1.59 7.99 -52.49 -0.42 1.17 16 25 H 0.04 0.49 7.97 -51.93 -0.41 0.08 16 26 H 0.08 1.16 7.94 -51.93 -0.41 0.75 16 27 H 0.02 0.38 8.14 -51.92 -0.42 -0.05 16 28 H 0.06 0.98 6.06 -51.93 -0.31 0.67 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 2.39 6.17 -51.93 -0.32 2.07 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.06 1.23 8.02 -51.92 -0.42 0.81 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 291.80 15.07 4.40 4.40 Total: -1.00 -27.36 291.80 -8.93 -36.28 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -5.57 Total: -2.05 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -0.86 Total: -16.90 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: -0.47 Total: -35.21 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -1.41 Total: -2.59 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.36 -8.93 -36.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307124349.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.999 kcal (2) G-P(sol) polarization free energy of solvation -27.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds