Wall clock time and date at job start Mon Mar 30 2020 05:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.31163 * 119.99670 * 2 1 4 4 Cl 1.73602 * 119.99979 * 0.02562 * 3 2 1 5 5 C 1.50692 * 120.00090 * 179.97438 * 2 1 3 6 6 N 1.46898 * 109.47254 * 275.00151 * 5 2 1 7 7 C 1.46846 * 110.99964 * 294.21182 * 6 5 2 8 8 C 1.53032 * 109.52443 * 174.16225 * 7 6 5 9 9 C 1.53123 * 109.28121 * 59.17535 * 8 7 6 10 10 C 1.53124 * 109.16220 * 302.35028 * 9 8 7 11 11 H 1.08993 * 109.50112 * 297.71243 * 10 9 8 12 12 C 1.50694 * 109.50452 * 177.59212 * 10 9 8 13 13 H 1.07996 * 119.99999 * 240.20030 * 12 10 9 14 14 C 1.37881 * 119.99747 * 60.19356 * 12 10 9 15 15 N 1.31510 * 120.00151 * 0.02562 * 14 12 10 16 16 Si 1.86805 * 119.99626 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47293 * 60.00150 * 16 14 12 18 18 H 1.48502 * 109.46989 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47243 * 300.00243 * 16 14 12 20 20 C 1.46846 * 111.00056 * 170.00214 * 6 5 2 21 21 H 1.08996 * 109.46956 * 269.99685 * 1 2 3 22 22 H 1.09001 * 109.46892 * 30.00447 * 1 2 3 23 23 H 1.09006 * 109.46885 * 150.00026 * 1 2 3 24 24 H 1.07997 * 119.99717 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47122 * 155.00128 * 5 2 1 26 26 H 1.09003 * 109.47471 * 35.00819 * 5 2 1 27 27 H 1.09009 * 109.46169 * 294.17270 * 7 6 5 28 28 H 1.08995 * 109.46611 * 54.14126 * 7 6 5 29 29 H 1.09001 * 109.50949 * 179.12117 * 8 7 6 30 30 H 1.09000 * 109.50361 * 299.23864 * 8 7 6 31 31 H 1.09001 * 109.51952 * 62.25288 * 9 8 7 32 32 H 1.09002 * 109.52604 * 182.38110 * 9 8 7 33 33 H 0.97002 * 119.99580 * 179.97438 * 15 14 12 34 34 H 1.09008 * 109.46456 * 305.85644 * 20 6 5 35 35 H 1.09003 * 109.46474 * 65.82149 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1628 1.1359 0.0000 4 17 1.2947 2.6393 0.0007 5 6 2.2605 -1.3050 0.0006 6 7 2.4008 -1.7889 1.3805 7 6 3.2506 -0.8884 2.1700 8 6 3.2562 -1.3414 3.6318 9 6 3.7853 -2.7759 3.7145 10 6 2.9118 -3.6847 2.8452 11 1 1.8917 -3.6845 3.2291 12 6 3.4609 -5.0878 2.8740 13 1 3.7812 -5.5612 1.9577 14 6 3.5544 -5.7670 4.0702 15 7 3.1639 -5.1906 5.1860 16 14 4.2344 -7.5065 4.1058 17 1 5.6248 -7.5053 3.5843 18 1 4.2294 -8.0115 5.5023 19 1 3.3890 -8.3859 3.2590 20 6 2.9162 -3.1637 1.4063 21 1 -0.3633 -0.0001 1.0276 22 1 -0.3633 0.8900 -0.5139 23 1 -0.3633 -0.8900 -0.5139 24 1 3.2428 1.1360 0.0004 25 1 3.2488 -1.1542 -0.4338 26 1 1.7133 -2.0409 -0.5887 27 1 4.2676 -0.9125 1.7785 28 1 2.8610 0.1276 2.1062 29 1 3.8994 -0.6821 4.2147 30 1 2.2415 -1.3044 4.0282 31 1 4.8137 -2.8061 3.3544 32 1 3.7514 -3.1176 4.7490 33 1 3.2294 -5.6687 6.0274 34 1 2.2836 -3.8004 0.7876 35 1 3.9347 -3.1771 1.0182 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307124349.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:05 Heat of formation + Delta-G solvation = -20.309135 kcal Electronic energy + Delta-G solvation = -15834.089962 eV Core-core repulsion = 13277.833963 eV Total energy + Delta-G solvation = -2556.255999 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 243.109 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.07497 -37.87836 -36.47957 -34.77127 -32.90197 -31.63920 -28.24660 -27.24719 -26.85519 -23.59268 -23.04069 -20.36102 -19.63895 -18.39481 -16.87154 -16.53203 -16.37499 -16.00436 -15.43983 -14.96214 -14.52967 -14.45352 -14.21059 -13.86104 -13.34513 -12.88348 -12.86736 -12.81449 -12.70570 -12.56636 -12.49226 -12.30361 -11.83666 -11.71695 -11.51657 -11.36373 -10.87346 -10.66617 -10.36661 -9.80948 -9.12538 -8.06678 -6.20928 0.89877 1.42856 1.43341 1.44075 1.51697 2.44217 3.20141 3.20847 3.84770 3.93311 4.19892 4.24443 4.40190 4.50254 4.61529 4.65399 4.70293 4.80637 4.85551 4.90070 4.99120 5.04299 5.10184 5.18429 5.32835 5.39141 5.51163 5.59033 5.64633 5.96449 6.12400 6.21164 6.31881 6.46048 6.91964 7.47137 8.97855 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.053232 B = 0.004913 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.872762 B = 5697.901780 C = 5928.331635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.094 4.094 3 C -0.117 4.117 4 Cl -0.096 7.096 5 C 0.092 3.908 6 N -0.542 5.542 7 C 0.064 3.936 8 C -0.111 4.111 9 C -0.104 4.104 10 C 0.053 3.947 11 H -0.004 1.004 12 C -0.537 4.537 13 H 0.053 0.947 14 C 0.015 3.985 15 N -0.916 5.916 16 Si 0.953 3.047 17 H -0.271 1.271 18 H -0.285 1.285 19 H -0.271 1.271 20 C 0.082 3.918 21 H 0.068 0.932 22 H 0.076 0.924 23 H 0.071 0.929 24 H 0.153 0.847 25 H 0.047 0.953 26 H 0.091 0.909 27 H 0.028 0.972 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.023 0.977 32 H 0.056 0.944 33 H 0.260 0.740 34 H 0.061 0.939 35 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.877 12.059 -10.210 15.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.095 4.095 3 C -0.162 4.162 4 Cl -0.068 7.068 5 C -0.035 4.035 6 N -0.267 5.267 7 C -0.063 4.063 8 C -0.148 4.148 9 C -0.142 4.142 10 C 0.034 3.966 11 H 0.014 0.986 12 C -0.575 4.575 13 H 0.071 0.929 14 C -0.184 4.184 15 N -0.555 5.555 16 Si 0.779 3.221 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.196 1.196 20 C -0.045 4.045 21 H 0.087 0.913 22 H 0.094 0.906 23 H 0.090 0.910 24 H 0.170 0.830 25 H 0.065 0.935 26 H 0.109 0.891 27 H 0.046 0.954 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.042 0.958 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -2.429 12.142 -9.815 15.801 hybrid contribution 1.110 -1.046 0.109 1.529 sum -1.319 11.096 -9.706 14.801 Atomic orbital electron populations 1.20874 0.90580 1.03244 1.02666 1.21847 0.97512 0.93352 0.96831 1.24350 0.98293 0.85274 1.08279 1.98332 1.77583 1.34064 1.96777 1.21105 0.98587 0.93926 0.89910 1.61895 1.51151 1.02349 1.11301 1.22069 0.94255 0.96496 0.93496 1.21575 1.00488 0.96830 0.95941 1.21466 0.96984 0.93727 1.02019 1.18581 0.94370 0.92910 0.90756 0.98565 1.21501 1.42373 1.00239 0.93427 0.92879 1.25713 0.95671 1.01654 0.95382 1.70035 1.48368 1.38499 0.98639 0.85687 0.79053 0.80364 0.76986 1.19668 1.21077 1.19619 1.21997 0.96179 0.87653 0.98654 0.91341 0.90558 0.90973 0.82958 0.93453 0.89096 0.95370 0.89734 0.91423 0.93328 0.95833 0.92533 0.93107 0.92046 0.96320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.55 9.59 71.24 0.68 -1.87 16 2 C -0.09 -2.17 4.97 -16.65 -0.08 -2.26 16 3 C -0.12 -2.48 8.85 67.62 0.60 -1.88 16 4 Cl -0.10 -1.99 27.23 -2.72 -0.07 -2.06 16 5 C 0.09 2.43 5.14 85.55 0.44 2.87 16 6 N -0.54 -18.66 4.65 -900.94 -4.19 -22.85 16 7 C 0.06 2.11 5.20 86.32 0.45 2.56 16 8 C -0.11 -4.26 6.09 30.65 0.19 -4.07 16 9 C -0.10 -4.97 5.03 30.68 0.15 -4.82 16 10 C 0.05 2.66 2.26 -11.49 -0.03 2.64 16 11 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 12 C -0.54 -29.59 8.56 25.60 0.22 -29.38 16 13 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 14 C 0.01 0.81 5.30 84.66 0.45 1.26 16 15 N -0.92 -53.36 11.37 21.45 0.24 -53.12 16 16 Si 0.95 43.52 29.54 68.60 2.03 45.55 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 18 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 20 C 0.08 3.38 4.68 86.33 0.40 3.79 16 21 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 22 H 0.08 1.49 6.74 -2.39 -0.02 1.47 16 23 H 0.07 1.47 8.09 -2.38 -0.02 1.46 16 24 H 0.15 2.89 7.99 -2.91 -0.02 2.87 16 25 H 0.05 1.16 7.97 -2.39 -0.02 1.14 16 26 H 0.09 2.29 7.94 -2.39 -0.02 2.27 16 27 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.08 2.42 6.06 -2.39 -0.01 2.41 16 29 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.06 3.08 6.17 -2.39 -0.01 3.07 16 33 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 34 H 0.06 2.47 8.02 -2.38 -0.02 2.45 16 35 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -58.92 291.80 2.53 -56.39 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 1.05 Total: 7.23 kcal Atomic # 6 Polarization: -34.62 SS G_CDS: 3.47 Total: -31.14 kcal Atomic # 7 Polarization: -72.02 SS G_CDS: -3.94 Total: -75.97 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 17 Polarization: -1.99 SS G_CDS: -0.07 Total: -2.06 kcal Total: -58.92 2.53 -56.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307124349.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.083 kcal (2) G-P(sol) polarization free energy of solvation -58.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds