Wall clock time and date at job start Mon Mar 30 2020 05:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.31164 * 120.00147 * 2 1 4 4 Cl 1.73607 * 119.99975 * 175.85757 * 3 2 1 5 5 C 1.50704 * 120.00261 * 180.02562 * 2 1 3 6 6 N 1.46495 * 109.46937 * 276.32708 * 5 2 1 7 7 C 1.36935 * 119.99910 * 263.87131 * 6 5 2 8 8 H 1.08006 * 120.00152 * 141.64674 * 7 6 5 9 9 C 1.38813 * 119.99939 * 321.64469 * 7 6 5 10 10 N 1.31621 * 120.00172 * 160.72891 * 9 7 6 11 11 Si 1.86798 * 120.00226 * 340.73505 * 9 7 6 12 12 H 1.48499 * 109.47347 * 95.28722 * 11 9 7 13 13 H 1.48496 * 109.47082 * 215.29372 * 11 9 7 14 14 H 1.48502 * 109.46973 * 335.29332 * 11 9 7 15 15 C 1.46499 * 120.00187 * 83.87335 * 6 5 2 16 16 C 1.54267 * 110.03385 * 122.09002 * 15 6 5 17 17 C 1.54974 * 104.15955 * 95.75384 * 16 15 6 18 18 C 1.54893 * 102.77527 * 37.89002 * 17 16 15 19 19 C 1.53882 * 110.03017 * 239.30963 * 15 6 5 20 20 H 1.08997 * 109.47146 * 270.00541 * 1 2 3 21 21 H 1.09004 * 109.46677 * 29.99811 * 1 2 3 22 22 H 1.08990 * 109.47546 * 149.99965 * 1 2 3 23 23 H 1.07992 * 119.99984 * 355.84900 * 3 2 1 24 24 H 1.08996 * 109.47208 * 156.32088 * 5 2 1 25 25 H 1.09000 * 109.46763 * 36.32003 * 5 2 1 26 26 H 0.96997 * 120.00184 * 180.02562 * 10 9 7 27 27 H 1.08997 * 110.02139 * 0.69537 * 15 6 5 28 28 H 1.09000 * 110.48817 * 214.39547 * 16 15 6 29 29 H 1.08997 * 110.48393 * 337.04609 * 16 15 6 30 30 H 1.09000 * 110.71813 * 279.57989 * 17 16 15 31 31 H 1.08994 * 110.91940 * 156.29737 * 17 16 15 32 32 H 1.09002 * 110.48360 * 203.40852 * 18 17 16 33 33 H 1.08993 * 110.60240 * 80.81768 * 18 17 16 34 34 H 1.09001 * 110.03185 * 359.94803 * 19 15 6 35 35 H 1.08999 * 110.03515 * 121.38369 * 19 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1628 1.1359 0.0000 4 17 3.8955 1.1378 0.1086 5 6 2.2605 -1.3051 -0.0006 6 7 2.3729 -1.8047 1.3720 7 6 3.5040 -1.5532 2.1017 8 1 3.4282 -1.3294 3.1555 9 6 4.7481 -1.5861 1.4869 10 7 5.7777 -0.9924 2.0526 11 14 4.9612 -2.4726 -0.1434 12 1 4.8376 -1.4979 -1.2569 13 1 6.3021 -3.1091 -0.1892 14 1 3.9132 -3.5158 -0.2803 15 6 1.2751 -2.5733 1.9639 16 6 1.7820 -3.9599 2.4115 17 6 2.1041 -3.7781 3.9164 18 6 0.9661 -2.8452 4.4000 19 6 0.7569 -1.8645 3.2276 20 1 -0.3633 0.0001 1.0276 21 1 -0.3633 0.8901 -0.5138 22 1 -0.3634 -0.8899 -0.5138 23 1 1.6250 2.0699 -0.0677 24 1 3.2572 -1.1490 -0.4132 25 1 1.7251 -2.0335 -0.6096 26 1 6.6469 -1.0151 1.6228 27 1 0.4669 -2.6866 1.2415 28 1 1.0050 -4.7121 2.2760 29 1 2.6805 -4.2342 1.8587 30 1 3.0759 -3.3023 4.0481 31 1 2.0693 -4.7334 4.4400 32 1 1.2697 -2.3070 5.2979 33 1 0.0563 -3.4154 4.5874 34 1 1.3228 -0.9492 3.4010 35 1 -0.3028 -1.6339 3.1184 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308446229.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:14 Heat of formation + Delta-G solvation = 23.209963 kcal Electronic energy + Delta-G solvation = -16787.915175 eV Core-core repulsion = 14233.546306 eV Total energy + Delta-G solvation = -2554.368869 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 243.109 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.10908 -36.16569 -34.71735 -32.95227 -31.05425 -27.86105 -27.48854 -26.33886 -25.64280 -22.39821 -19.91559 -18.83911 -18.34743 -16.32793 -15.40938 -15.30320 -14.71309 -14.20775 -13.81186 -13.40581 -12.95810 -12.72873 -12.27409 -11.99837 -11.70881 -11.46278 -11.22568 -11.05482 -10.76201 -10.58452 -10.37141 -10.29846 -10.13758 -9.93271 -9.82485 -9.66810 -9.46974 -9.36425 -8.36083 -7.94211 -6.69807 -5.84455 -3.26253 2.61901 3.37427 3.41172 3.54374 3.57734 4.63903 5.09135 5.37110 5.40345 5.44141 5.55654 5.62598 5.72612 5.92115 5.96568 6.12586 6.17688 6.23297 6.29204 6.35755 6.42188 6.51240 6.59823 6.68743 6.73265 6.77957 6.92945 7.10796 7.11972 7.26201 7.27731 8.18785 8.54163 9.11111 9.86565 10.24684 11.30630 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.019901 B = 0.013288 C = 0.009961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.614342 B = 2106.641345 C = 2810.215318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.126 4.126 3 C -0.128 4.128 4 Cl -0.067 7.067 5 C 0.157 3.843 6 N -0.587 5.587 7 C -0.251 4.251 8 H 0.080 0.920 9 C 0.054 3.946 10 N -0.896 5.896 11 Si 0.857 3.143 12 H -0.281 1.281 13 H -0.306 1.306 14 H -0.270 1.270 15 C 0.175 3.825 16 C -0.129 4.129 17 C -0.117 4.117 18 C -0.118 4.118 19 C -0.132 4.132 20 H 0.069 0.931 21 H 0.054 0.946 22 H 0.059 0.941 23 H 0.125 0.875 24 H 0.077 0.923 25 H 0.039 0.961 26 H 0.258 0.742 27 H 0.049 0.951 28 H 0.044 0.956 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.120 -0.262 -2.340 10.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.130 4.130 3 C -0.174 4.174 4 Cl -0.038 7.038 5 C 0.031 3.969 6 N -0.307 5.307 7 C -0.379 4.379 8 H 0.097 0.903 9 C -0.146 4.146 10 N -0.537 5.537 11 Si 0.688 3.312 12 H -0.209 1.209 13 H -0.235 1.235 14 H -0.195 1.195 15 C 0.068 3.932 16 C -0.168 4.168 17 C -0.154 4.154 18 C -0.156 4.156 19 C -0.171 4.171 20 H 0.087 0.913 21 H 0.073 0.927 22 H 0.078 0.922 23 H 0.142 0.858 24 H 0.095 0.905 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.777 -0.248 -2.324 10.052 hybrid contribution 0.289 -0.329 -0.911 1.011 sum -9.487 -0.577 -3.234 10.040 Atomic orbital electron populations 1.20689 0.91979 1.01388 1.01964 1.22739 0.95602 0.97504 0.97166 1.23958 0.86218 0.98381 1.08823 1.98414 1.10601 1.98640 1.96170 1.20517 0.98425 0.89720 0.88216 1.44191 1.16622 1.58516 1.11393 1.18547 0.82052 1.42619 0.94714 0.90252 1.25275 0.95418 0.97478 0.96429 1.69827 1.00936 1.42998 1.39909 0.87236 0.76356 0.81328 0.86316 1.20860 1.23452 1.19544 1.21016 0.89433 0.89795 0.92991 1.22702 1.00278 0.97261 0.96549 1.22448 0.99805 0.97673 0.95492 1.22250 0.97846 0.97577 0.97927 1.22611 0.98832 0.99937 0.95738 0.91252 0.92699 0.92156 0.85762 0.90526 0.94318 0.93171 0.93290 0.93725 0.91223 0.89909 0.93750 0.92877 0.93309 0.90575 0.93917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.48 10.04 36.00 0.36 -1.12 16 2 C -0.13 -2.34 5.63 -101.11 -0.57 -2.90 16 3 C -0.13 -2.40 10.41 28.97 0.30 -2.10 16 4 Cl -0.07 -1.49 25.10 -51.86 -1.30 -2.79 16 5 C 0.16 3.35 3.96 -5.19 -0.02 3.32 16 6 N -0.59 -13.13 1.95 -165.75 -0.32 -13.45 16 7 C -0.25 -6.52 7.44 -15.06 -0.11 -6.63 16 8 H 0.08 2.28 6.83 -52.48 -0.36 1.92 16 9 C 0.05 1.50 3.87 -17.43 -0.07 1.43 16 10 N -0.90 -26.34 13.97 55.49 0.78 -25.57 16 11 Si 0.86 21.95 24.55 -169.99 -4.17 17.78 16 12 H -0.28 -7.08 6.71 56.52 0.38 -6.70 16 13 H -0.31 -8.12 7.11 56.52 0.40 -7.72 16 14 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 15 C 0.17 3.35 3.47 -66.81 -0.23 3.12 16 16 C -0.13 -2.41 6.10 -25.03 -0.15 -2.56 16 17 C -0.12 -2.11 6.56 -24.69 -0.16 -2.27 16 18 C -0.12 -1.95 6.83 -25.07 -0.17 -2.12 16 19 C -0.13 -2.35 6.18 -25.61 -0.16 -2.51 16 20 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 21 H 0.05 0.67 8.05 -51.93 -0.42 0.26 16 22 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 23 H 0.12 1.96 8.02 -52.49 -0.42 1.54 16 24 H 0.08 1.82 1.93 -51.93 -0.10 1.72 16 25 H 0.04 0.77 8.03 -51.93 -0.42 0.35 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.05 0.86 7.90 -51.93 -0.41 0.45 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.49 7.97 -51.93 -0.41 1.07 16 30 H 0.08 1.75 6.91 -51.93 -0.36 1.39 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.57 7.00 -51.93 -0.36 1.21 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 284.89 15.07 4.29 4.29 Total: -1.00 -28.27 284.89 -7.09 -35.36 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -5.38 Total: -1.28 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -0.98 Total: -14.35 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.45 Total: -39.02 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.17 Total: 17.78 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -1.30 Total: -2.79 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.27 -7.09 -35.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308446229.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.572 kcal (2) G-P(sol) polarization free energy of solvation -28.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds