Wall clock time and date at job start Mon Mar 30 2020 05:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.31164 * 120.00147 * 2 1 4 4 Cl 1.73607 * 119.99975 * 175.85757 * 3 2 1 5 5 C 1.50704 * 120.00261 * 180.02562 * 2 1 3 6 6 N 1.46495 * 109.46937 * 276.32708 * 5 2 1 7 7 C 1.36935 * 119.99910 * 263.87131 * 6 5 2 8 8 H 1.08006 * 120.00152 * 141.64674 * 7 6 5 9 9 C 1.38813 * 119.99939 * 321.64469 * 7 6 5 10 10 N 1.31621 * 120.00172 * 160.72891 * 9 7 6 11 11 Si 1.86798 * 120.00226 * 340.73505 * 9 7 6 12 12 H 1.48499 * 109.47347 * 95.28722 * 11 9 7 13 13 H 1.48496 * 109.47082 * 215.29372 * 11 9 7 14 14 H 1.48502 * 109.46973 * 335.29332 * 11 9 7 15 15 C 1.46499 * 120.00187 * 83.87335 * 6 5 2 16 16 C 1.54267 * 110.03385 * 122.09002 * 15 6 5 17 17 C 1.54974 * 104.15955 * 95.75384 * 16 15 6 18 18 C 1.54893 * 102.77527 * 37.89002 * 17 16 15 19 19 C 1.53882 * 110.03017 * 239.30963 * 15 6 5 20 20 H 1.08997 * 109.47146 * 270.00541 * 1 2 3 21 21 H 1.09004 * 109.46677 * 29.99811 * 1 2 3 22 22 H 1.08990 * 109.47546 * 149.99965 * 1 2 3 23 23 H 1.07992 * 119.99984 * 355.84900 * 3 2 1 24 24 H 1.08996 * 109.47208 * 156.32088 * 5 2 1 25 25 H 1.09000 * 109.46763 * 36.32003 * 5 2 1 26 26 H 0.96997 * 120.00184 * 180.02562 * 10 9 7 27 27 H 1.08997 * 110.02139 * 0.69537 * 15 6 5 28 28 H 1.09000 * 110.48817 * 214.39547 * 16 15 6 29 29 H 1.08997 * 110.48393 * 337.04609 * 16 15 6 30 30 H 1.09000 * 110.71813 * 279.57989 * 17 16 15 31 31 H 1.08994 * 110.91940 * 156.29737 * 17 16 15 32 32 H 1.09002 * 110.48360 * 203.40852 * 18 17 16 33 33 H 1.08993 * 110.60240 * 80.81768 * 18 17 16 34 34 H 1.09001 * 110.03185 * 359.94803 * 19 15 6 35 35 H 1.08999 * 110.03515 * 121.38369 * 19 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1628 1.1359 0.0000 4 17 3.8955 1.1378 0.1086 5 6 2.2605 -1.3051 -0.0006 6 7 2.3729 -1.8047 1.3720 7 6 3.5040 -1.5532 2.1017 8 1 3.4282 -1.3294 3.1555 9 6 4.7481 -1.5861 1.4869 10 7 5.7777 -0.9924 2.0526 11 14 4.9612 -2.4726 -0.1434 12 1 4.8376 -1.4979 -1.2569 13 1 6.3021 -3.1091 -0.1892 14 1 3.9132 -3.5158 -0.2803 15 6 1.2751 -2.5733 1.9639 16 6 1.7820 -3.9599 2.4115 17 6 2.1041 -3.7781 3.9164 18 6 0.9661 -2.8452 4.4000 19 6 0.7569 -1.8645 3.2276 20 1 -0.3633 0.0001 1.0276 21 1 -0.3633 0.8901 -0.5138 22 1 -0.3634 -0.8899 -0.5138 23 1 1.6250 2.0699 -0.0677 24 1 3.2572 -1.1490 -0.4132 25 1 1.7251 -2.0335 -0.6096 26 1 6.6469 -1.0151 1.6228 27 1 0.4669 -2.6866 1.2415 28 1 1.0050 -4.7121 2.2760 29 1 2.6805 -4.2342 1.8587 30 1 3.0759 -3.3023 4.0481 31 1 2.0693 -4.7334 4.4400 32 1 1.2697 -2.3070 5.2979 33 1 0.0563 -3.4154 4.5874 34 1 1.3228 -0.9492 3.4010 35 1 -0.3028 -1.6339 3.1184 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308446229.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:14 Heat of formation + Delta-G solvation = 7.554953 kcal Electronic energy + Delta-G solvation = -16788.594027 eV Core-core repulsion = 14233.546306 eV Total energy + Delta-G solvation = -2555.047721 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 243.109 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.69042 -37.68374 -36.31061 -34.69579 -32.94181 -29.30708 -28.94982 -27.69951 -27.44201 -24.20435 -21.34600 -20.49063 -19.88003 -18.13909 -17.21806 -16.90663 -16.24020 -15.77298 -15.42101 -14.96358 -14.72308 -14.14000 -13.84239 -13.69910 -13.14637 -13.01564 -12.82774 -12.67068 -12.60255 -12.12501 -11.88649 -11.78226 -11.73521 -11.65306 -11.41635 -11.32494 -11.17901 -11.07540 -10.38242 -9.48286 -8.55864 -7.98665 -5.34353 1.13919 1.34703 1.42265 1.48407 1.90777 2.54386 3.30701 3.52764 3.98509 4.01294 4.11974 4.20384 4.32803 4.59735 4.74471 4.75403 4.82867 4.87979 4.94406 4.99761 5.05136 5.05288 5.12020 5.19429 5.29968 5.33555 5.49257 5.60254 5.62423 5.80079 5.83278 6.13831 6.42985 7.19133 7.85476 8.25447 9.20620 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.019901 B = 0.013288 C = 0.009961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.614342 B = 2106.641345 C = 2810.215318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.124 4.124 3 C -0.138 4.138 4 Cl -0.107 7.107 5 C 0.146 3.854 6 N -0.596 5.596 7 C -0.213 4.213 8 H 0.044 0.956 9 C 0.014 3.986 10 N -0.940 5.940 11 Si 0.900 3.100 12 H -0.278 1.278 13 H -0.325 1.325 14 H -0.260 1.260 15 C 0.166 3.834 16 C -0.128 4.128 17 C -0.118 4.118 18 C -0.111 4.111 19 C -0.125 4.125 20 H 0.073 0.927 21 H 0.080 0.920 22 H 0.076 0.924 23 H 0.159 0.841 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.251 0.749 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.036 0.964 30 H 0.038 0.962 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.039 0.961 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.782 -0.921 -2.932 14.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.183 4.183 4 Cl -0.078 7.078 5 C 0.021 3.979 6 N -0.317 5.317 7 C -0.342 4.342 8 H 0.062 0.938 9 C -0.183 4.183 10 N -0.585 5.585 11 Si 0.732 3.268 12 H -0.205 1.205 13 H -0.255 1.255 14 H -0.185 1.185 15 C 0.060 3.940 16 C -0.167 4.167 17 C -0.155 4.155 18 C -0.149 4.149 19 C -0.164 4.164 20 H 0.092 0.908 21 H 0.099 0.901 22 H 0.095 0.905 23 H 0.176 0.824 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.060 0.940 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.058 0.942 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.495 -0.917 -2.935 13.841 hybrid contribution 1.301 -0.137 -0.697 1.482 sum -12.194 -1.054 -3.632 12.767 Atomic orbital electron populations 1.20722 0.88224 1.03571 1.02808 1.22897 0.97997 0.95673 0.96209 1.24449 0.84153 1.00274 1.09430 1.98415 1.14272 1.98737 1.96407 1.20555 0.97991 0.91878 0.87469 1.44279 1.16383 1.59575 1.11512 1.18237 0.83206 1.39478 0.93325 0.93803 1.25574 0.95426 0.98790 0.98467 1.69938 1.01199 1.45873 1.41503 0.86526 0.75307 0.80626 0.84354 1.20543 1.25530 1.18483 1.21301 0.88974 0.89610 0.94092 1.22700 0.99878 0.97967 0.96142 1.22385 0.98351 0.98868 0.95917 1.22234 0.98383 0.97094 0.97177 1.22503 0.99975 0.98405 0.95501 0.90804 0.90103 0.90521 0.82390 0.93108 0.92302 0.93997 0.90517 0.90240 0.94536 0.94310 0.91473 0.93251 0.89922 0.94227 0.90775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.30 10.04 71.23 0.71 -1.59 16 2 C -0.12 -4.24 5.63 -16.65 -0.09 -4.33 16 3 C -0.14 -4.91 10.41 67.62 0.70 -4.21 16 4 Cl -0.11 -4.77 25.10 -2.72 -0.07 -4.84 16 5 C 0.15 5.94 3.96 85.64 0.34 6.28 16 6 N -0.60 -25.97 1.95 -678.31 -1.32 -27.29 16 7 C -0.21 -11.26 7.44 84.03 0.63 -10.64 16 8 H 0.04 2.65 6.83 -2.91 -0.02 2.63 16 9 C 0.01 0.77 3.87 84.86 0.33 1.10 16 10 N -0.94 -57.78 13.97 21.65 0.30 -57.48 16 11 Si 0.90 46.35 24.55 68.60 1.68 48.04 16 12 H -0.28 -13.99 6.71 99.48 0.67 -13.32 16 13 H -0.33 -17.57 7.11 99.48 0.71 -16.86 16 14 H -0.26 -12.73 7.11 99.48 0.71 -12.03 16 15 C 0.17 5.88 3.47 45.72 0.16 6.04 16 16 C -0.13 -4.48 6.10 31.70 0.19 -4.29 16 17 C -0.12 -4.09 6.56 31.92 0.21 -3.88 16 18 C -0.11 -3.35 6.83 31.67 0.22 -3.13 16 19 C -0.12 -4.09 6.18 31.32 0.19 -3.89 16 20 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 21 H 0.08 1.55 8.05 -2.38 -0.02 1.53 16 22 H 0.08 1.61 8.10 -2.39 -0.02 1.59 16 23 H 0.16 4.49 8.02 -2.91 -0.02 4.47 16 24 H 0.05 2.36 1.93 -2.39 0.00 2.36 16 25 H 0.06 2.14 8.03 -2.39 -0.02 2.12 16 26 H 0.25 15.17 8.31 -92.71 -0.77 14.39 16 27 H 0.08 2.32 7.90 -2.39 -0.02 2.30 16 28 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.04 1.51 7.97 -2.39 -0.02 1.49 16 30 H 0.04 1.67 6.91 -2.39 -0.02 1.65 16 31 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.04 1.59 7.00 -2.39 -0.02 1.57 16 35 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -64.06 284.89 5.20 -58.86 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: 1.02 Total: 5.26 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: 3.59 Total: -22.54 kcal Atomic # 7 Polarization: -83.75 SS G_CDS: -1.02 Total: -84.77 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.68 Total: 48.04 kcal Atomic # 17 Polarization: -4.77 SS G_CDS: -0.07 Total: -4.84 kcal Total: -64.06 5.20 -58.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308446229.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.413 kcal (2) G-P(sol) polarization free energy of solvation -64.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds