Wall clock time and date at job start Mon Mar 30 2020 05:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.46982 * 2 1 4 4 C 1.37780 * 119.99849 * 179.97438 * 3 2 1 5 5 N 1.32707 * 120.11767 * 0.02591 * 4 3 2 6 6 N 1.28040 * 124.14131 * 179.69255 * 5 4 3 7 7 C 1.33910 * 122.86487 * 0.57386 * 6 5 4 8 8 C 1.40244 * 120.94010 * 179.73573 * 7 6 5 9 9 H 1.07991 * 119.99701 * 179.71938 * 8 7 6 10 10 C 1.40194 * 119.99696 * 359.71307 * 8 7 6 11 11 N 1.30704 * 120.00472 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99732 * 180.27670 * 10 8 7 13 13 H 1.48497 * 109.47322 * 179.72848 * 12 10 8 14 14 H 1.48498 * 109.47165 * 299.72796 * 12 10 8 15 15 H 1.48501 * 109.47099 * 59.72621 * 12 10 8 16 16 C 1.47022 * 118.11685 * 359.46109 * 7 6 5 17 17 C 1.39114 * 122.76493 * 180.27624 * 16 7 6 18 18 C 1.37879 * 119.27820 * 179.97438 * 17 16 7 19 19 C 1.38997 * 120.78229 * 0.02562 * 18 17 16 20 20 C 1.36625 * 120.99008 * 359.97438 * 19 18 17 21 21 C 1.39772 * 119.50654 * 0.02562 * 20 19 18 22 22 H 1.09005 * 109.46880 * 299.99766 * 1 2 3 23 23 H 1.08995 * 109.47153 * 59.99956 * 1 2 3 24 24 H 1.09005 * 109.46942 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46880 * 240.00234 * 2 1 3 26 26 H 1.09000 * 109.47566 * 120.00243 * 2 1 3 27 27 H 0.96998 * 120.00015 * 0.02562 * 3 2 1 28 28 H 0.97005 * 120.00047 * 179.97438 * 11 10 8 29 29 H 1.07995 * 120.35983 * 359.95353 * 17 16 7 30 30 H 1.07996 * 119.60805 * 179.97438 * 18 17 16 31 31 H 1.08005 * 119.50815 * 179.97438 * 19 18 17 32 32 H 1.07997 * 120.24336 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3729 1.6330 0.0005 5 7 4.2373 0.6261 0.0005 6 7 5.5095 0.7711 -0.0047 7 6 6.1041 1.9710 0.0005 8 6 7.5021 2.0829 0.0000 9 1 7.9656 3.0583 -0.0003 10 6 8.2977 0.9286 0.0001 11 7 7.7366 -0.2519 0.0001 12 14 10.1597 1.0777 0.0072 13 1 10.7649 -0.2784 0.0128 14 1 10.6022 1.8122 -1.2051 15 1 10.5924 1.8178 1.2198 16 6 5.2499 3.1676 0.0006 17 6 5.7646 4.4600 0.0001 18 6 4.8967 5.5314 -0.0004 19 6 3.5211 5.3325 0.0002 20 6 2.9924 4.0727 0.0006 21 6 3.8477 2.9672 0.0011 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 1.3880 2.1185 0.0004 28 1 8.2872 -1.0506 -0.0002 29 1 6.8322 4.6223 0.0004 30 1 5.2905 6.5370 -0.0003 31 1 2.8601 6.1867 0.0002 32 1 1.9216 3.9321 0.0015 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309675243.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:38 Heat of formation + Delta-G solvation = 43.823093 kcal Electronic energy + Delta-G solvation = -16771.517414 eV Core-core repulsion = 14116.934903 eV Total energy + Delta-G solvation = -2654.582511 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.19151 -38.19087 -37.37443 -35.52848 -33.24357 -32.22585 -30.88568 -29.88602 -27.38411 -24.77300 -24.60241 -23.20075 -22.13109 -19.90024 -18.68474 -18.39693 -17.14463 -16.90514 -15.97815 -15.88716 -15.48098 -15.12373 -14.91257 -14.68957 -14.45891 -13.31470 -13.09634 -13.06630 -13.01135 -12.86081 -12.65084 -12.47891 -12.46364 -12.08240 -11.89502 -11.62733 -10.99194 -10.83014 -9.96975 -9.61187 -9.37507 -8.59155 -8.42575 -6.36374 0.07361 0.33759 1.29372 1.40840 1.55685 1.67276 2.21010 2.55373 2.70641 2.95515 3.87486 3.98546 4.04551 4.16030 4.25747 4.33229 4.33503 4.51062 4.60448 4.61645 4.79028 5.03900 5.04833 5.15964 5.18924 5.24401 5.30337 5.39007 5.54159 5.63044 5.69362 6.18374 6.22509 6.51002 6.72582 6.82440 7.16213 8.37550 9.29220 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.021525 B = 0.008268 C = 0.005999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.472118 B = 3385.933410 C = 4665.955475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.138 3.862 3 N -0.720 5.720 4 C 0.214 3.786 5 N -0.344 5.344 6 N -0.342 5.342 7 C 0.144 3.856 8 C -0.427 4.427 9 H 0.106 0.894 10 C 0.012 3.988 11 N -0.753 5.753 12 Si 0.998 3.002 13 H -0.271 1.271 14 H -0.253 1.253 15 H -0.253 1.253 16 C -0.121 4.121 17 C -0.095 4.095 18 C -0.131 4.131 19 C -0.107 4.107 20 C -0.118 4.118 21 C -0.095 4.095 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.083 0.917 25 H 0.030 0.970 26 H 0.030 0.970 27 H 0.406 0.594 28 H 0.283 0.717 29 H 0.132 0.868 30 H 0.157 0.843 31 H 0.162 0.838 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.264 8.914 0.011 11.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.014 3.986 3 N -0.364 5.364 4 C -0.038 4.038 5 N -0.185 5.185 6 N -0.185 5.185 7 C 0.006 3.994 8 C -0.463 4.463 9 H 0.123 0.877 10 C -0.210 4.210 11 N -0.376 5.376 12 Si 0.816 3.184 13 H -0.196 1.196 14 H -0.176 1.176 15 H -0.177 1.177 16 C -0.129 4.129 17 C -0.114 4.114 18 C -0.151 4.151 19 C -0.126 4.126 20 C -0.139 4.139 21 C -0.104 4.104 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.102 0.898 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.243 0.757 28 H 0.094 0.906 29 H 0.150 0.850 30 H 0.175 0.825 31 H 0.180 0.820 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.038 6.747 0.011 9.750 hybrid contribution 0.464 1.108 0.006 1.201 sum -6.575 7.855 0.017 10.244 Atomic orbital electron populations 1.21897 0.91658 1.03845 1.02972 1.20962 0.95517 0.82925 0.99237 1.43439 1.00693 1.07526 1.84729 1.19903 0.88068 0.90192 1.05656 1.72084 0.99997 1.29981 1.16469 1.73905 0.98214 1.20277 1.26078 1.21623 0.95780 0.88271 0.93757 1.19668 0.89361 0.95499 1.41733 0.87657 1.27239 1.06953 0.93928 0.92901 1.70220 1.39767 0.99563 1.28047 0.85031 0.73989 0.78833 0.80500 1.19559 1.17644 1.17656 1.20203 0.93235 0.95992 1.03505 1.21236 1.00790 0.90824 0.98590 1.21519 0.93472 0.99108 1.00968 1.21220 0.95626 0.97107 0.98661 1.20924 0.99354 0.91691 1.01917 1.18579 0.93920 0.94029 1.03830 0.91247 0.91238 0.89783 0.95189 0.95194 0.75688 0.90612 0.84998 0.82519 0.82008 0.83819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 10.03 71.98 0.72 -2.51 16 2 C 0.14 4.79 6.40 86.38 0.55 5.34 16 3 N -0.72 -27.34 5.62 -343.66 -1.93 -29.27 16 4 C 0.21 10.62 7.61 134.00 1.02 11.64 16 5 N -0.34 -20.36 10.60 -54.37 -0.58 -20.93 16 6 N -0.34 -21.74 9.08 -48.42 -0.44 -22.18 16 7 C 0.14 8.48 6.81 41.62 0.28 8.77 16 8 C -0.43 -23.32 8.88 23.23 0.21 -23.11 16 9 H 0.11 5.06 6.34 -2.91 -0.02 5.05 16 10 C 0.01 0.63 5.50 85.34 0.47 1.10 16 11 N -0.75 -43.22 11.52 21.87 0.25 -42.97 16 12 Si 1.00 38.01 29.56 68.60 2.03 40.03 16 13 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 14 H -0.25 -9.07 7.11 99.48 0.71 -8.37 16 15 H -0.25 -9.09 7.11 99.48 0.71 -8.38 16 16 C -0.12 -6.06 5.91 -19.92 -0.12 -6.18 16 17 C -0.10 -3.80 9.53 22.39 0.21 -3.59 16 18 C -0.13 -3.97 10.02 22.37 0.22 -3.74 16 19 C -0.11 -3.01 9.95 22.07 0.22 -2.79 16 20 C -0.12 -4.01 9.54 22.26 0.21 -3.80 16 21 C -0.10 -4.40 5.76 -21.23 -0.12 -4.52 16 22 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 23 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 25 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 26 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.41 12.21 6.68 -92.71 -0.62 11.59 16 28 H 0.28 14.67 8.29 -92.70 -0.77 13.90 16 29 H 0.13 4.94 6.58 -2.91 -0.02 4.92 16 30 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 31 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 32 H 0.14 3.80 6.58 -2.91 -0.02 3.78 16 Total: -1.00 -76.41 274.93 3.75 -72.66 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 0.53 Total: 26.05 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: 3.88 Total: -23.40 kcal Atomic # 7 Polarization: -112.66 SS G_CDS: -2.69 Total: -115.35 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 2.03 Total: 40.03 kcal Total: -76.41 3.75 -72.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309675243.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.484 kcal (2) G-P(sol) polarization free energy of solvation -76.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds