Wall clock time and date at job start Mon Mar 30 2020 05:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86797 * 119.99843 * 2 1 4 4 H 1.48506 * 109.46980 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47165 * 300.00053 * 3 2 1 6 6 H 1.48505 * 109.47061 * 59.99895 * 3 2 1 7 7 C 1.39926 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99977 * 197.90140 * 7 2 1 9 9 C 1.41415 * 119.99914 * 17.90044 * 7 2 1 10 10 C 1.40782 * 120.20592 * 204.44633 * 9 7 2 11 11 C 1.37645 * 119.89788 * 179.97438 * 10 9 7 12 12 C 1.38522 * 120.32070 * 0.27423 * 11 10 9 13 13 C 1.39299 * 120.42523 * 359.44856 * 12 11 10 14 14 N 1.39677 * 119.95268 * 180.27647 * 13 12 11 15 15 C 1.46499 * 120.00006 * 0.27241 * 14 13 12 16 16 H 1.09001 * 110.43646 * 36.09102 * 15 14 13 17 17 C 1.54892 * 110.48684 * 273.54287 * 15 14 13 18 18 C 1.54889 * 102.74858 * 203.38172 * 17 15 14 19 19 C 1.54265 * 104.19594 * 37.94597 * 18 17 15 20 20 H 1.08995 * 117.41067 * 117.58420 * 19 18 17 21 21 C 1.52999 * 118.19680 * 272.20987 * 19 18 17 22 22 C 1.52996 * 60.38127 * 93.61747 * 21 19 18 23 23 H 1.08995 * 119.75568 * 111.11900 * 22 21 19 24 24 C 1.38315 * 120.09165 * 0.55112 * 13 12 11 25 25 H 0.96996 * 120.00035 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.05389 * 359.95885 * 10 9 7 27 27 H 1.07995 * 119.84019 * 179.97438 * 11 10 9 28 28 H 1.08003 * 119.79007 * 179.72147 * 12 11 10 29 29 H 0.97001 * 119.99871 * 180.27613 * 14 13 12 30 30 H 1.09000 * 110.75338 * 321.69744 * 17 15 14 31 31 H 1.09005 * 110.74937 * 84.88273 * 17 15 14 32 32 H 1.08999 * 110.48781 * 156.62365 * 18 17 15 33 33 H 1.09001 * 110.48621 * 279.13295 * 18 17 15 34 34 H 1.09005 * 117.46219 * 201.21759 * 21 19 18 35 35 H 1.09000 * 117.46518 * 346.04047 * 21 19 18 36 36 H 1.08002 * 120.16263 * 179.74752 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8834 2.3965 1.2125 7 6 2.0080 -1.2118 -0.0005 8 1 3.0487 -1.2345 0.2869 9 6 1.3522 -2.4067 -0.3775 10 6 1.8257 -3.6500 0.0827 11 6 1.1823 -4.8090 -0.2877 12 6 0.0735 -4.7591 -1.1164 13 6 -0.4099 -3.5358 -1.5750 14 7 -1.5322 -3.4965 -2.4056 15 6 -2.2036 -4.7409 -2.7890 16 1 -2.1867 -5.4525 -1.9635 17 6 -1.5357 -5.3523 -4.0457 18 6 -2.6650 -6.2298 -4.6403 19 6 -3.9474 -5.4042 -4.4087 20 1 -4.5008 -5.0790 -5.2896 21 6 -4.6875 -5.5755 -3.0806 22 6 -3.6541 -4.4575 -3.2316 23 1 -3.9803 -3.4176 -3.2458 24 6 0.2233 -2.3604 -1.2136 25 1 -0.4850 0.8400 -0.0004 26 1 2.6927 -3.6944 0.7253 27 1 1.5466 -5.7623 0.0656 28 1 -0.4221 -5.6742 -1.4054 29 1 -1.8670 -2.6454 -2.7286 30 1 -1.2440 -4.5706 -4.7470 31 1 -0.6751 -5.9610 -3.7681 32 1 -2.5022 -6.3907 -5.7060 33 1 -2.7231 -7.1837 -4.1160 34 1 -5.7385 -5.2879 -3.0500 35 1 -4.4163 -6.4300 -2.4605 36 1 -0.1481 -1.4116 -1.5718 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313408405.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:32 Heat of formation + Delta-G solvation = 39.900977 kcal Electronic energy + Delta-G solvation = -16864.507434 eV Core-core repulsion = 14313.295191 eV Total energy + Delta-G solvation = -2551.212243 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.57881 -37.46815 -34.42912 -33.08979 -31.01182 -29.39205 -28.51678 -25.59013 -25.10304 -22.60706 -21.21909 -20.37069 -19.84104 -19.37147 -17.25421 -16.09071 -15.78415 -14.89278 -14.61691 -14.25678 -13.84703 -13.31489 -12.85459 -12.75611 -12.65766 -12.16234 -12.00012 -11.51759 -11.36563 -11.16324 -11.01704 -10.89523 -10.61859 -10.49621 -10.36088 -10.16596 -9.61313 -9.56087 -9.37618 -9.18875 -8.70591 -7.26894 -6.69507 -6.11096 -4.27332 2.88538 3.12253 3.18069 3.27029 3.36853 3.67303 4.00667 4.23021 4.56317 4.74628 4.84210 5.10073 5.21970 5.39468 5.56779 5.58704 5.66032 5.77778 5.82096 5.90719 5.99134 6.21427 6.23317 6.32530 6.35039 6.48397 6.66375 6.93420 7.16140 7.18190 7.42966 7.49188 7.86601 8.00701 8.15864 8.22093 8.53807 8.76921 8.88867 9.05473 9.16648 10.29263 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.032425 B = 0.005553 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.330397 B = 5041.155089 C = 5567.297788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.078 3.922 3 Si 0.903 3.097 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.465 4.465 8 H 0.076 0.924 9 C 0.139 3.861 10 C -0.258 4.258 11 C -0.066 4.066 12 C -0.300 4.300 13 C 0.218 3.782 14 N -0.751 5.751 15 C 0.188 3.812 16 H 0.078 0.922 17 C -0.136 4.136 18 C -0.095 4.095 19 C -0.169 4.169 20 H 0.107 0.893 21 C -0.152 4.152 22 C -0.167 4.167 23 H 0.110 0.890 24 C -0.232 4.232 25 H 0.276 0.724 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.389 0.611 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.854 -6.438 -7.125 11.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.139 4.139 3 Si 0.728 3.272 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.495 4.495 8 H 0.094 0.906 9 C 0.135 3.865 10 C -0.278 4.278 11 C -0.085 4.085 12 C -0.322 4.322 13 C 0.119 3.881 14 N -0.383 5.383 15 C 0.081 3.919 16 H 0.096 0.904 17 C -0.176 4.176 18 C -0.133 4.133 19 C -0.187 4.187 20 H 0.125 0.875 21 C -0.189 4.189 22 C -0.186 4.186 23 H 0.128 0.872 24 C -0.256 4.256 25 H 0.087 0.913 26 H 0.106 0.894 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.222 0.778 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.068 -6.456 -7.105 11.921 hybrid contribution 0.085 1.168 -0.083 1.174 sum -6.983 -5.288 -7.188 11.331 Atomic orbital electron populations 1.69880 1.07505 1.28621 1.35859 1.25870 0.94654 1.01067 0.92336 0.86356 0.81123 0.81359 0.78392 1.18456 1.19872 1.20144 1.19581 0.98100 0.91333 1.40479 0.90582 1.17325 0.90090 0.91833 0.87205 1.20855 1.04839 0.92954 1.09195 1.20281 0.95208 0.96222 0.96815 1.19902 1.04562 0.94397 1.13385 1.17642 0.86285 0.94294 0.89858 1.44391 1.31752 1.06025 1.56117 1.21033 0.87726 0.87847 0.95342 0.90406 1.23180 0.97712 0.98967 0.97702 1.21915 0.92784 0.97829 1.00778 1.23242 0.99837 1.03278 0.92359 0.87538 1.23026 0.96910 1.00131 0.98873 1.23452 0.95619 0.96408 1.03092 0.87156 1.20720 1.02608 0.95052 1.07193 0.91297 0.89443 0.89704 0.89626 0.77755 0.91187 0.91093 0.91460 0.91581 0.88593 0.88969 0.86579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.94 10.96 55.55 0.61 -20.33 16 2 C 0.08 2.01 5.14 -17.35 -0.09 1.92 16 3 Si 0.90 19.09 29.59 -169.99 -5.03 14.06 16 4 H -0.26 -5.47 7.11 56.52 0.40 -5.06 16 5 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 6 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.46 -12.72 9.05 -37.74 -0.34 -13.06 16 8 H 0.08 2.01 7.91 -52.49 -0.42 1.60 16 9 C 0.14 3.82 5.57 -106.85 -0.60 3.23 16 10 C -0.26 -6.62 9.79 -38.84 -0.38 -7.00 16 11 C -0.07 -1.56 10.02 -39.69 -0.40 -1.96 16 12 C -0.30 -6.89 9.23 -39.08 -0.36 -7.25 16 13 C 0.22 5.14 6.64 -83.86 -0.56 4.58 16 14 N -0.75 -14.57 5.35 -50.61 -0.27 -14.84 16 15 C 0.19 3.00 2.59 -66.27 -0.17 2.83 16 16 H 0.08 1.34 6.61 -51.93 -0.34 1.00 16 17 C -0.14 -1.96 6.58 -24.74 -0.16 -2.13 16 18 C -0.10 -1.10 6.62 -25.07 -0.17 -1.27 16 19 C -0.17 -1.93 6.94 -89.50 -0.62 -2.55 16 20 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 21 C -0.15 -1.72 10.07 -26.73 -0.27 -1.99 16 22 C -0.17 -2.24 6.52 -89.50 -0.58 -2.82 16 23 H 0.11 1.48 8.02 -51.93 -0.42 1.07 16 24 C -0.23 -6.14 8.53 -38.68 -0.33 -6.47 16 25 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 26 H 0.09 2.13 8.06 -52.49 -0.42 1.70 16 27 H 0.08 1.74 8.06 -52.49 -0.42 1.31 16 28 H 0.09 1.78 6.24 -52.48 -0.33 1.45 16 29 H 0.39 7.24 8.53 -40.82 -0.35 6.89 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.07 1.07 8.12 -51.93 -0.42 0.65 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.12 3.17 6.16 -52.49 -0.32 2.85 16 LS Contribution 295.36 15.07 4.45 4.45 Total: -1.00 -28.10 295.36 -10.38 -38.48 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -5.11 Total: 12.12 kcal Atomic # 6 Polarization: -28.91 SS G_CDS: -5.03 Total: -33.94 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: 0.34 Total: -35.17 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.10 -10.38 -38.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313408405.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.382 kcal (2) G-P(sol) polarization free energy of solvation -28.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds