Wall clock time and date at job start Mon Mar 30 2020 05:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86797 * 119.99843 * 2 1 4 4 H 1.48506 * 109.46980 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47165 * 300.00053 * 3 2 1 6 6 H 1.48505 * 109.47061 * 59.99895 * 3 2 1 7 7 C 1.39926 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99977 * 197.90140 * 7 2 1 9 9 C 1.41415 * 119.99914 * 17.90044 * 7 2 1 10 10 C 1.40782 * 120.20592 * 204.44633 * 9 7 2 11 11 C 1.37645 * 119.89788 * 179.97438 * 10 9 7 12 12 C 1.38522 * 120.32070 * 0.27423 * 11 10 9 13 13 C 1.39299 * 120.42523 * 359.44856 * 12 11 10 14 14 N 1.39677 * 119.95268 * 180.27647 * 13 12 11 15 15 C 1.46499 * 120.00006 * 0.27241 * 14 13 12 16 16 H 1.09001 * 110.43646 * 36.09102 * 15 14 13 17 17 C 1.54892 * 110.48684 * 273.54287 * 15 14 13 18 18 C 1.54889 * 102.74858 * 203.38172 * 17 15 14 19 19 C 1.54265 * 104.19594 * 37.94597 * 18 17 15 20 20 H 1.08995 * 117.41067 * 117.58420 * 19 18 17 21 21 C 1.52999 * 118.19680 * 272.20987 * 19 18 17 22 22 C 1.52996 * 60.38127 * 93.61747 * 21 19 18 23 23 H 1.08995 * 119.75568 * 111.11900 * 22 21 19 24 24 C 1.38315 * 120.09165 * 0.55112 * 13 12 11 25 25 H 0.96996 * 120.00035 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.05389 * 359.95885 * 10 9 7 27 27 H 1.07995 * 119.84019 * 179.97438 * 11 10 9 28 28 H 1.08003 * 119.79007 * 179.72147 * 12 11 10 29 29 H 0.97001 * 119.99871 * 180.27613 * 14 13 12 30 30 H 1.09000 * 110.75338 * 321.69744 * 17 15 14 31 31 H 1.09005 * 110.74937 * 84.88273 * 17 15 14 32 32 H 1.08999 * 110.48781 * 156.62365 * 18 17 15 33 33 H 1.09001 * 110.48621 * 279.13295 * 18 17 15 34 34 H 1.09005 * 117.46219 * 201.21759 * 21 19 18 35 35 H 1.09000 * 117.46518 * 346.04047 * 21 19 18 36 36 H 1.08002 * 120.16263 * 179.74752 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8834 2.3965 1.2125 7 6 2.0080 -1.2118 -0.0005 8 1 3.0487 -1.2345 0.2869 9 6 1.3522 -2.4067 -0.3775 10 6 1.8257 -3.6500 0.0827 11 6 1.1823 -4.8090 -0.2877 12 6 0.0735 -4.7591 -1.1164 13 6 -0.4099 -3.5358 -1.5750 14 7 -1.5322 -3.4965 -2.4056 15 6 -2.2036 -4.7409 -2.7890 16 1 -2.1867 -5.4525 -1.9635 17 6 -1.5357 -5.3523 -4.0457 18 6 -2.6650 -6.2298 -4.6403 19 6 -3.9474 -5.4042 -4.4087 20 1 -4.5008 -5.0790 -5.2896 21 6 -4.6875 -5.5755 -3.0806 22 6 -3.6541 -4.4575 -3.2316 23 1 -3.9803 -3.4176 -3.2458 24 6 0.2233 -2.3604 -1.2136 25 1 -0.4850 0.8400 -0.0004 26 1 2.6927 -3.6944 0.7253 27 1 1.5466 -5.7623 0.0656 28 1 -0.4221 -5.6742 -1.4054 29 1 -1.8670 -2.6454 -2.7286 30 1 -1.2440 -4.5706 -4.7470 31 1 -0.6751 -5.9610 -3.7681 32 1 -2.5022 -6.3907 -5.7060 33 1 -2.7231 -7.1837 -4.1160 34 1 -5.7385 -5.2879 -3.0500 35 1 -4.4163 -6.4300 -2.4605 36 1 -0.1481 -1.4116 -1.5718 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313408405.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:32 Heat of formation + Delta-G solvation = 25.958779 kcal Electronic energy + Delta-G solvation = -16865.112013 eV Core-core repulsion = 14313.295191 eV Total energy + Delta-G solvation = -2551.816822 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.73834 -39.23985 -36.14465 -34.90152 -32.14489 -31.34418 -30.09162 -27.19376 -26.88783 -23.65749 -23.02777 -21.86901 -21.21897 -20.57583 -19.11414 -17.62981 -17.22732 -16.56790 -16.38385 -15.57958 -15.35938 -14.61601 -14.50506 -14.31314 -14.05117 -13.70357 -13.53670 -13.22023 -12.85546 -12.69176 -12.49745 -12.27061 -12.11224 -12.03901 -11.68018 -11.52167 -11.32748 -11.12326 -11.00905 -10.58935 -10.41997 -9.25306 -8.62322 -7.89714 -6.32142 1.07677 1.33560 1.38284 1.53186 1.57414 2.23101 2.71031 2.76350 2.82833 3.53000 3.82017 3.90685 4.05027 4.19461 4.32860 4.49228 4.52055 4.56944 4.62408 4.72991 4.80240 4.91143 4.98926 5.07833 5.18595 5.19778 5.22848 5.26449 5.32659 5.41448 5.49174 5.62385 5.96856 6.11333 6.21805 6.28198 6.58910 6.94943 7.05826 7.07203 7.25674 8.38421 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.032425 B = 0.005553 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.330397 B = 5041.155089 C = 5567.297788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.037 3.963 3 Si 0.980 3.020 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.504 4.504 8 H 0.071 0.929 9 C 0.108 3.892 10 C -0.286 4.286 11 C -0.063 4.063 12 C -0.302 4.302 13 C 0.223 3.777 14 N -0.746 5.746 15 C 0.181 3.819 16 H 0.067 0.933 17 C -0.134 4.134 18 C -0.089 4.089 19 C -0.154 4.154 20 H 0.125 0.875 21 C -0.140 4.140 22 C -0.191 4.191 23 H 0.106 0.894 24 C -0.261 4.261 25 H 0.285 0.715 26 H 0.090 0.910 27 H 0.118 0.882 28 H 0.111 0.889 29 H 0.390 0.610 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.015 -7.296 -8.165 13.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.178 4.178 3 Si 0.801 3.199 4 H -0.183 1.183 5 H -0.189 1.189 6 H -0.190 1.190 7 C -0.534 4.534 8 H 0.090 0.910 9 C 0.105 3.895 10 C -0.307 4.307 11 C -0.081 4.081 12 C -0.325 4.325 13 C 0.121 3.879 14 N -0.376 5.376 15 C 0.076 3.924 16 H 0.085 0.915 17 C -0.174 4.174 18 C -0.127 4.127 19 C -0.172 4.172 20 H 0.143 0.857 21 C -0.177 4.177 22 C -0.210 4.210 23 H 0.124 0.876 24 C -0.285 4.285 25 H 0.095 0.905 26 H 0.108 0.892 27 H 0.136 0.864 28 H 0.129 0.871 29 H 0.224 0.776 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.133 0.867 35 H 0.113 0.887 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.263 -7.344 -8.166 13.744 hybrid contribution 0.363 1.323 0.215 1.389 sum -7.900 -6.021 -7.951 12.723 Atomic orbital electron populations 1.69934 1.08953 1.30048 1.35994 1.26723 0.95467 1.04332 0.91243 0.85202 0.79450 0.76373 0.78887 1.18290 1.18919 1.19027 1.19830 0.98250 0.92741 1.42572 0.91032 1.17723 0.90963 0.92879 0.87909 1.21021 1.05824 0.93365 1.10457 1.20650 0.94681 0.96915 0.95869 1.20223 1.04407 0.95056 1.12782 1.17760 0.86854 0.93742 0.89497 1.44520 1.30556 1.07678 1.54888 1.21245 0.89530 0.86019 0.95638 0.91501 1.23110 0.98442 0.99008 0.96800 1.21904 0.91424 0.97520 1.01846 1.23361 0.99607 1.01520 0.92699 0.85731 1.23155 0.97292 0.98757 0.98520 1.23331 0.94694 0.97177 1.05799 0.87554 1.20648 1.03659 0.95421 1.08771 0.90482 0.89181 0.86368 0.87085 0.77610 0.92149 0.92033 0.89624 0.90560 0.86721 0.88678 0.88336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.72 10.96 21.82 0.24 -44.48 16 2 C 0.04 1.94 5.14 85.25 0.44 2.38 16 3 Si 0.98 39.75 29.59 68.60 2.03 41.78 16 4 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 5 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 6 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 7 C -0.50 -28.72 9.05 23.46 0.21 -28.51 16 8 H 0.07 3.96 7.91 -2.91 -0.02 3.94 16 9 C 0.11 6.21 5.57 -21.31 -0.12 6.09 16 10 C -0.29 -15.04 9.79 22.75 0.22 -14.82 16 11 C -0.06 -2.90 10.02 22.20 0.22 -2.68 16 12 C -0.30 -13.70 9.23 22.59 0.21 -13.49 16 13 C 0.22 10.65 6.64 38.16 0.25 10.90 16 14 N -0.75 -29.08 5.35 -314.05 -1.68 -30.76 16 15 C 0.18 5.61 2.59 46.07 0.12 5.73 16 16 H 0.07 2.21 6.61 -2.39 -0.02 2.19 16 17 C -0.13 -3.67 6.58 31.89 0.21 -3.46 16 18 C -0.09 -1.78 6.62 31.67 0.21 -1.57 16 19 C -0.15 -3.00 6.94 -10.07 -0.07 -3.07 16 20 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 21 C -0.14 -2.72 10.07 30.59 0.31 -2.42 16 22 C -0.19 -4.78 6.52 -10.07 -0.07 -4.85 16 23 H 0.11 2.74 8.02 -2.39 -0.02 2.72 16 24 C -0.26 -14.34 8.53 22.86 0.20 -14.15 16 25 H 0.28 13.92 8.30 -92.71 -0.77 13.15 16 26 H 0.09 4.52 8.06 -2.91 -0.02 4.50 16 27 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 28 H 0.11 4.42 6.24 -2.91 -0.02 4.40 16 29 H 0.39 14.84 8.53 -92.71 -0.79 14.04 16 30 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.06 1.78 8.12 -2.38 -0.02 1.76 16 32 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 35 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.10 5.66 6.16 -2.91 -0.02 5.64 16 Total: -1.00 -62.24 295.36 3.22 -59.02 By element: Atomic # 1 Polarization: 38.08 SS G_CDS: 0.28 Total: 38.36 kcal Atomic # 6 Polarization: -66.27 SS G_CDS: 2.35 Total: -63.92 kcal Atomic # 7 Polarization: -73.80 SS G_CDS: -1.44 Total: -75.24 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.78 kcal Total: -62.24 3.22 -59.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313408405.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.979 kcal (2) G-P(sol) polarization free energy of solvation -62.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds