Wall clock time and date at job start Mon Mar 30 2020 05:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86802 * 120.00076 * 2 1 4 4 H 1.48494 * 109.47001 * 270.00229 * 3 2 1 5 5 H 1.48497 * 109.47003 * 30.00464 * 3 2 1 6 6 H 1.48496 * 109.46822 * 150.00112 * 3 2 1 7 7 C 1.39929 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00562 * 162.68914 * 7 2 1 9 9 C 1.41409 * 119.99953 * 342.96292 * 7 2 1 10 10 C 1.40785 * 120.20695 * 334.63036 * 9 7 2 11 11 C 1.37647 * 119.89198 * 179.67106 * 10 9 7 12 12 C 1.38530 * 120.32238 * 0.62472 * 11 10 9 13 13 C 1.39287 * 120.42628 * 359.66809 * 12 11 10 14 14 N 1.39688 * 119.95310 * 180.02562 * 13 12 11 15 15 C 1.46498 * 119.99867 * 359.97438 * 14 13 12 16 16 H 1.08997 * 110.43447 * 32.45858 * 15 14 13 17 17 C 1.54894 * 110.48727 * 269.77528 * 15 14 13 18 18 C 1.54891 * 102.74989 * 279.26677 * 17 15 14 19 19 C 1.54270 * 104.19168 * 322.06016 * 18 17 15 20 20 H 1.09007 * 117.75603 * 243.24675 * 19 18 17 21 21 C 1.55455 * 118.30732 * 87.19837 * 19 18 17 22 22 C 1.52995 * 59.83978 * 266.70386 * 21 19 18 23 23 H 1.09002 * 119.29717 * 248.28718 * 22 21 19 24 24 C 1.38325 * 120.09681 * 0.02562 * 13 12 11 25 25 H 0.97003 * 120.00241 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.05279 * 359.97438 * 10 9 7 27 27 H 1.07998 * 119.84053 * 180.31736 * 11 10 9 28 28 H 1.07998 * 119.78620 * 179.69331 * 12 11 10 29 29 H 0.96997 * 120.00041 * 179.97438 * 14 13 12 30 30 H 1.09005 * 110.75209 * 37.57627 * 17 15 14 31 31 H 1.08997 * 110.75916 * 160.94905 * 17 15 14 32 32 H 1.08995 * 110.48810 * 203.37945 * 18 17 15 33 33 H 1.08999 * 110.48658 * 80.73319 * 18 17 15 34 34 H 1.09007 * 117.18812 * 159.17769 * 21 19 18 35 35 H 1.09004 * 118.06233 * 13.83897 * 21 19 18 36 36 H 1.07996 * 120.16054 * 179.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4398 2.6526 0.7001 6 1 3.5398 1.4401 0.7000 7 6 2.0079 -1.2118 -0.0005 8 1 3.0512 -1.2330 -0.2788 9 6 1.3474 -2.4097 0.3577 10 6 0.2176 -2.3720 1.1969 11 6 -0.4244 -3.5413 1.5361 12 6 0.0433 -4.7577 1.0661 13 6 1.1635 -4.8111 0.2400 14 7 1.6262 -6.0430 -0.2288 15 6 0.9338 -7.2775 0.1491 16 1 -0.1339 -7.0935 0.2689 17 6 1.5360 -7.8599 1.4519 18 6 2.8008 -8.5962 0.9445 19 6 2.3643 -9.2156 -0.3993 20 1 2.3664 -10.3026 -0.4817 21 6 2.4929 -8.3521 -1.6855 22 6 1.1773 -8.3773 -0.9049 23 1 0.3010 -8.8471 -1.3516 24 6 1.8183 -3.6462 -0.1170 25 1 -0.4851 0.8401 0.0004 26 1 -0.1476 -1.4266 1.5700 27 1 -1.2940 -3.5109 2.1758 28 1 -0.4642 -5.6703 1.3416 29 1 2.4060 -6.0810 -0.8044 30 1 1.8052 -7.0616 2.1435 31 1 0.8429 -8.5597 1.9188 32 1 3.0955 -9.3762 1.6464 33 1 3.6174 -7.8906 0.7918 34 1 2.5219 -8.8798 -2.6389 35 1 3.0903 -7.4418 -1.6344 36 1 2.6872 -3.6865 -0.7571 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313408407.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:34 Heat of formation + Delta-G solvation = 30.757623 kcal Electronic energy + Delta-G solvation = -16881.928513 eV Core-core repulsion = 14330.319784 eV Total energy + Delta-G solvation = -2551.608728 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.88859 -39.15522 -36.09710 -34.44898 -32.19394 -31.62442 -29.80492 -27.46875 -27.03834 -23.69390 -22.75746 -22.52310 -20.83662 -20.28553 -19.07598 -17.68774 -17.21701 -16.77612 -16.33211 -15.99426 -15.08587 -14.70359 -14.46804 -14.36381 -13.99016 -13.56261 -13.44705 -13.18350 -12.83587 -12.67157 -12.49661 -12.28960 -12.13627 -11.87410 -11.80262 -11.61160 -11.19739 -11.07078 -10.99495 -10.62394 -10.40369 -9.32885 -8.60224 -7.91701 -6.32543 1.05421 1.34782 1.39087 1.52102 1.60159 2.23052 2.58625 2.80862 2.90363 3.56388 3.76901 3.86393 3.93031 4.27103 4.30614 4.49978 4.54829 4.59399 4.63725 4.69511 4.89739 4.90703 5.05280 5.11427 5.15542 5.16961 5.20250 5.22324 5.32627 5.43050 5.47129 5.61810 5.96857 6.03430 6.21022 6.32276 6.64257 6.90923 7.02553 7.06300 7.25799 8.38321 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.042640 B = 0.005064 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.503043 B = 5527.694582 C = 5832.678555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.036 3.964 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.260 1.260 7 C -0.504 4.504 8 H 0.071 0.929 9 C 0.113 3.887 10 C -0.232 4.232 11 C -0.075 4.075 12 C -0.303 4.303 13 C 0.236 3.764 14 N -0.742 5.742 15 C 0.171 3.829 16 H 0.073 0.927 17 C -0.135 4.135 18 C -0.093 4.093 19 C -0.149 4.149 20 H 0.134 0.866 21 C -0.158 4.158 22 C -0.178 4.178 23 H 0.125 0.875 24 C -0.314 4.314 25 H 0.287 0.713 26 H 0.095 0.905 27 H 0.108 0.892 28 H 0.112 0.888 29 H 0.391 0.609 30 H 0.051 0.949 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.117 0.883 35 H 0.080 0.920 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.878 -13.962 -0.251 14.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.179 4.179 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.189 1.189 6 H -0.184 1.184 7 C -0.534 4.534 8 H 0.089 0.911 9 C 0.110 3.890 10 C -0.253 4.253 11 C -0.094 4.094 12 C -0.326 4.326 13 C 0.135 3.865 14 N -0.374 5.374 15 C 0.065 3.935 16 H 0.091 0.909 17 C -0.175 4.175 18 C -0.130 4.130 19 C -0.167 4.167 20 H 0.151 0.849 21 C -0.195 4.195 22 C -0.197 4.197 23 H 0.143 0.857 24 C -0.338 4.338 25 H 0.097 0.903 26 H 0.113 0.887 27 H 0.126 0.874 28 H 0.130 0.870 29 H 0.227 0.773 30 H 0.069 0.931 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.135 0.865 35 H 0.099 0.901 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.529 -13.952 -0.180 14.181 hybrid contribution 0.381 1.070 -0.304 1.176 sum 2.910 -12.882 -0.483 13.216 Atomic orbital electron populations 1.69920 1.09037 1.30350 1.35804 1.26760 0.95479 1.04462 0.91151 0.85219 0.79086 0.75947 0.79492 1.18637 1.18915 1.18384 1.19793 0.97942 0.92579 1.43083 0.91087 1.17701 0.91075 0.92409 0.87785 1.21084 1.01825 0.96858 1.05514 1.20733 0.97886 0.92684 0.98089 1.20177 1.02958 0.97027 1.12425 1.17548 0.92150 0.85146 0.91694 1.44645 1.34094 1.02193 1.56494 1.21216 0.96237 0.82895 0.93141 0.90894 1.23112 0.97957 0.99293 0.97089 1.21906 0.96830 0.99023 0.95244 1.23737 1.01767 0.98322 0.92845 0.84862 1.23393 0.98643 1.01311 0.96149 1.23517 0.94003 0.99943 1.02207 0.85728 1.20504 1.07261 0.92237 1.13831 0.90285 0.88666 0.87441 0.86961 0.77271 0.93053 0.89340 0.89567 0.92903 0.86480 0.90124 0.89492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.18 10.97 21.82 0.24 -44.94 16 2 C 0.04 1.91 5.15 85.25 0.44 2.35 16 3 Si 0.98 39.72 29.59 68.60 2.03 41.75 16 4 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 5 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 6 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 7 C -0.50 -28.75 9.05 23.46 0.21 -28.54 16 8 H 0.07 3.92 7.90 -2.91 -0.02 3.90 16 9 C 0.11 6.51 5.56 -21.31 -0.12 6.39 16 10 C -0.23 -13.00 8.69 22.75 0.20 -12.81 16 11 C -0.08 -3.69 10.02 22.20 0.22 -3.47 16 12 C -0.30 -13.79 9.23 22.59 0.21 -13.59 16 13 C 0.24 10.79 6.64 38.16 0.25 11.05 16 14 N -0.74 -26.52 5.25 -314.05 -1.65 -28.17 16 15 C 0.17 4.91 2.91 46.07 0.13 5.05 16 16 H 0.07 2.25 6.39 -2.39 -0.02 2.24 16 17 C -0.14 -3.44 6.58 31.89 0.21 -3.23 16 18 C -0.09 -1.98 6.60 31.67 0.21 -1.77 16 19 C -0.15 -2.80 7.04 -9.23 -0.06 -2.86 16 20 H 0.13 1.91 8.14 -2.38 -0.02 1.89 16 21 C -0.16 -3.24 9.82 31.44 0.31 -2.93 16 22 C -0.18 -3.99 6.75 -10.07 -0.07 -4.06 16 23 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 24 C -0.31 -16.42 9.63 22.86 0.22 -16.20 16 25 H 0.29 14.12 8.30 -92.71 -0.77 13.35 16 26 H 0.10 5.56 6.19 -2.91 -0.02 5.55 16 27 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 28 H 0.11 4.47 6.18 -2.91 -0.02 4.45 16 29 H 0.39 13.19 6.30 -92.71 -0.58 12.61 16 30 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.05 1.28 8.14 -2.39 -0.02 1.27 16 34 H 0.12 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.08 1.88 6.17 -2.38 -0.01 1.86 16 36 H 0.09 4.39 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -62.56 291.32 3.48 -59.07 By element: Atomic # 1 Polarization: 36.42 SS G_CDS: 0.50 Total: 36.91 kcal Atomic # 6 Polarization: -66.99 SS G_CDS: 2.36 Total: -64.63 kcal Atomic # 7 Polarization: -71.70 SS G_CDS: -1.41 Total: -73.11 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Total: -62.56 3.48 -59.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313408407.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.833 kcal (2) G-P(sol) polarization free energy of solvation -62.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds