Wall clock time and date at job start Mon Mar 30 2020 05:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86803 * 120.00287 * 2 1 4 4 H 1.48498 * 109.47143 * 275.41438 * 3 2 1 5 5 H 1.48497 * 109.46916 * 35.41142 * 3 2 1 6 6 H 1.48494 * 109.47242 * 155.41289 * 3 2 1 7 7 C 1.39934 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99775 * 341.73537 * 7 2 1 9 9 C 1.41410 * 120.00305 * 161.73197 * 7 2 1 10 10 C 1.40787 * 120.20534 * 330.19635 * 9 7 2 11 11 C 1.37643 * 119.89385 * 180.02562 * 10 9 7 12 12 C 1.38529 * 120.32103 * 359.74401 * 11 10 9 13 13 C 1.39286 * 120.42445 * 0.51353 * 12 11 10 14 14 N 1.39688 * 119.95327 * 179.76653 * 13 12 11 15 15 C 1.46507 * 119.99712 * 359.71817 * 14 13 12 16 16 H 1.09000 * 109.24451 * 35.34982 * 15 14 13 17 17 C 1.50539 * 109.62673 * 275.54397 * 15 14 13 18 18 C 1.29444 * 124.15680 * 222.78180 * 17 15 14 19 19 C 1.50066 * 124.07732 * 0.41228 * 18 17 15 20 20 C 1.53020 * 110.14740 * 342.87028 * 19 18 17 21 21 C 1.53021 * 109.35332 * 155.00171 * 15 14 13 22 22 C 1.38316 * 120.09682 * 359.48605 * 13 12 11 23 23 H 0.97004 * 119.99592 * 359.97438 * 1 2 3 24 24 H 1.08000 * 120.05634 * 359.97438 * 10 9 7 25 25 H 1.07995 * 119.84203 * 180.02562 * 11 10 9 26 26 H 1.08010 * 119.78390 * 180.27731 * 12 11 10 27 27 H 0.97000 * 120.00372 * 179.72435 * 14 13 12 28 28 H 1.07997 * 117.88486 * 42.70585 * 17 15 14 29 29 H 1.08004 * 117.96384 * 180.39066 * 18 17 15 30 30 H 1.09003 * 109.36207 * 222.65794 * 19 18 17 31 31 H 1.09004 * 109.24821 * 103.00594 * 19 18 17 32 32 H 1.09001 * 109.64284 * 289.74817 * 20 19 18 33 33 H 1.09005 * 109.82078 * 169.22015 * 20 19 18 34 34 H 1.08998 * 109.64384 * 49.96371 * 21 15 14 35 35 H 1.09000 * 109.64665 * 289.53632 * 21 15 14 36 36 H 1.08001 * 120.15874 * 180.23576 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3755 2.1124 -1.3938 5 1 1.5017 2.6169 0.8113 6 1 3.5923 1.4098 0.5825 7 6 2.0080 -1.2118 0.0005 8 1 1.5088 -2.1235 0.2941 9 6 3.3686 -1.2429 -0.3833 10 6 3.8630 -0.3111 -1.3158 11 6 5.1884 -0.3475 -1.6852 12 6 6.0407 -1.2937 -1.1400 13 6 5.5646 -2.2253 -0.2204 14 7 6.4316 -3.1782 0.3196 15 6 7.8392 -3.2011 -0.0861 16 1 8.1824 -2.1797 -0.2505 17 6 7.9851 -3.9876 -1.3614 18 6 8.9318 -4.8419 -1.5841 19 6 10.0129 -5.1750 -0.5981 20 6 10.0904 -4.0956 0.4838 21 6 8.6757 -3.8451 1.0215 22 6 4.2359 -2.2046 0.1633 23 1 -0.4850 0.8401 0.0004 24 1 3.2031 0.4306 -1.7411 25 1 5.5668 0.3679 -2.4003 26 1 7.0802 -1.3116 -1.4327 27 1 6.1017 -3.8247 0.9630 28 1 7.2525 -3.8296 -2.1389 29 1 8.9443 -5.3465 -2.5389 30 1 10.9694 -5.2356 -1.1172 31 1 9.7922 -6.1364 -0.1340 32 1 10.4878 -3.1754 0.0554 33 1 10.7367 -4.4310 1.2950 34 1 8.2239 -4.7915 1.3187 35 1 8.7236 -3.1761 1.8807 36 1 3.8665 -2.9240 0.8791 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313430530.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:27 Heat of formation + Delta-G solvation = 24.030521 kcal Electronic energy + Delta-G solvation = -16751.529616 eV Core-core repulsion = 14199.629179 eV Total energy + Delta-G solvation = -2551.900437 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.04530 -37.52122 -34.58182 -33.08373 -31.05017 -30.14786 -29.92498 -26.98001 -25.09089 -22.83320 -22.35002 -20.93363 -20.12044 -17.88488 -17.41438 -16.38754 -15.89609 -15.12671 -14.77374 -14.49678 -13.88033 -13.66204 -13.29852 -12.77257 -12.67719 -12.57121 -12.39309 -12.16552 -11.86586 -11.51521 -11.23645 -10.89601 -10.80651 -10.53415 -10.45168 -10.18972 -9.73781 -9.47408 -9.23043 -8.98163 -8.85476 -7.56039 -6.85428 -6.43494 -4.41182 2.34604 2.73306 2.95818 3.20765 3.30773 3.42731 4.08949 4.13095 4.61639 4.71932 4.74286 4.94771 5.20524 5.35431 5.46946 5.50981 5.58712 5.60915 5.77351 5.81070 5.93316 6.08907 6.18364 6.30440 6.39626 6.61143 6.72005 6.83550 6.87564 6.99746 7.05485 7.36322 7.61830 7.73377 7.84178 8.03554 8.39579 8.48093 8.54892 8.82089 8.95174 10.17554 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.049598 B = 0.005016 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.403339 B = 5580.428407 C = 5686.917585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.086 3.914 3 Si 0.915 3.085 4 H -0.272 1.272 5 H -0.295 1.295 6 H -0.244 1.244 7 C -0.452 4.452 8 H 0.088 0.912 9 C 0.126 3.874 10 C -0.271 4.271 11 C -0.049 4.049 12 C -0.302 4.302 13 C 0.236 3.764 14 N -0.752 5.752 15 C 0.187 3.813 16 H 0.084 0.916 17 C -0.151 4.151 18 C -0.168 4.168 19 C -0.089 4.089 20 C -0.116 4.116 21 C -0.126 4.126 22 C -0.278 4.278 23 H 0.283 0.717 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.390 0.610 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.998 -5.559 0.356 16.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.132 4.132 3 Si 0.742 3.258 4 H -0.198 1.198 5 H -0.222 1.222 6 H -0.168 1.168 7 C -0.481 4.481 8 H 0.106 0.894 9 C 0.122 3.878 10 C -0.292 4.292 11 C -0.068 4.068 12 C -0.324 4.324 13 C 0.136 3.864 14 N -0.383 5.383 15 C 0.081 3.919 16 H 0.102 0.898 17 C -0.171 4.171 18 C -0.187 4.187 19 C -0.126 4.126 20 C -0.154 4.154 21 C -0.164 4.164 22 C -0.302 4.302 23 H 0.093 0.907 24 H 0.114 0.886 25 H 0.109 0.891 26 H 0.111 0.889 27 H 0.224 0.776 28 H 0.124 0.876 29 H 0.117 0.883 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 15.868 -5.409 0.291 16.767 hybrid contribution -0.043 0.448 0.004 0.450 sum 15.825 -4.961 0.295 16.587 Atomic orbital electron populations 1.69711 1.08134 1.30059 1.35998 1.26134 0.94634 1.01746 0.90706 0.86270 0.81260 0.79634 0.78647 1.19815 1.22238 1.16758 1.19452 0.93288 0.95994 1.39351 0.89438 1.17443 0.92425 0.89679 0.88258 1.20895 0.95688 1.06189 1.06393 1.20369 0.93529 0.96027 0.96827 1.19943 0.98498 1.04215 1.09777 1.17561 0.89260 0.87838 0.91694 1.44538 1.07021 1.36666 1.50113 1.19594 0.82706 0.98595 0.91011 0.89837 1.22890 0.97860 0.97189 0.99137 1.21980 0.97300 0.99772 0.99612 1.20434 0.97593 0.98793 0.95746 1.21569 0.96460 0.99258 0.98140 1.21840 0.95356 1.01186 0.97981 1.20405 0.91413 1.08417 1.09974 0.90652 0.88593 0.89091 0.88915 0.77597 0.87576 0.88314 0.91406 0.91231 0.91584 0.91568 0.91517 0.91236 0.88560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.35 13.93 55.55 0.77 -21.58 16 2 C 0.09 2.33 5.40 -17.35 -0.09 2.23 16 3 Si 0.91 21.64 24.52 -169.99 -4.17 17.47 16 4 H -0.27 -6.26 6.71 56.52 0.38 -5.88 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.24 -5.95 6.86 56.52 0.39 -5.56 16 7 C -0.45 -12.65 9.57 -37.74 -0.36 -13.01 16 8 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 9 C 0.13 3.30 5.10 -106.85 -0.55 2.76 16 10 C -0.27 -6.81 7.17 -38.84 -0.28 -7.09 16 11 C -0.05 -1.09 10.02 -39.69 -0.40 -1.49 16 12 C -0.30 -6.43 9.15 -39.08 -0.36 -6.79 16 13 C 0.24 5.03 6.62 -83.86 -0.55 4.47 16 14 N -0.75 -12.80 5.24 -53.40 -0.28 -13.08 16 15 C 0.19 2.66 2.43 -69.15 -0.17 2.50 16 16 H 0.08 1.28 6.47 -51.93 -0.34 0.94 16 17 C -0.15 -2.10 9.22 -35.67 -0.33 -2.43 16 18 C -0.17 -1.95 9.80 -35.90 -0.35 -2.31 16 19 C -0.09 -0.84 6.11 -28.18 -0.17 -1.01 16 20 C -0.12 -1.10 6.01 -26.51 -0.16 -1.26 16 21 C -0.13 -1.41 5.46 -26.51 -0.14 -1.56 16 22 C -0.28 -6.68 9.63 -38.68 -0.37 -7.05 16 23 H 0.28 7.04 8.30 -40.82 -0.34 6.71 16 24 H 0.10 2.41 4.73 -52.49 -0.25 2.16 16 25 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 26 H 0.09 1.77 6.15 -52.48 -0.32 1.45 16 27 H 0.39 6.11 8.59 -40.82 -0.35 5.76 16 28 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 29 H 0.10 1.06 8.06 -52.48 -0.42 0.64 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.10 2.22 8.06 -52.49 -0.42 1.79 16 LS Contribution 289.39 15.07 4.36 4.36 Total: -1.00 -28.41 289.39 -8.68 -37.08 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -5.08 Total: 7.78 kcal Atomic # 6 Polarization: -27.75 SS G_CDS: -4.29 Total: -32.04 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: 0.49 Total: -34.66 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.17 Total: 17.47 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.41 -8.68 -37.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313430530.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.113 kcal (2) G-P(sol) polarization free energy of solvation -28.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds