Wall clock time and date at job start Mon Mar 30 2020 05:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86803 * 120.00287 * 2 1 4 4 H 1.48498 * 109.47143 * 275.41438 * 3 2 1 5 5 H 1.48497 * 109.46916 * 35.41142 * 3 2 1 6 6 H 1.48494 * 109.47242 * 155.41289 * 3 2 1 7 7 C 1.39934 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99775 * 341.73537 * 7 2 1 9 9 C 1.41410 * 120.00305 * 161.73197 * 7 2 1 10 10 C 1.40787 * 120.20534 * 330.19635 * 9 7 2 11 11 C 1.37643 * 119.89385 * 180.02562 * 10 9 7 12 12 C 1.38529 * 120.32103 * 359.74401 * 11 10 9 13 13 C 1.39286 * 120.42445 * 0.51353 * 12 11 10 14 14 N 1.39688 * 119.95327 * 179.76653 * 13 12 11 15 15 C 1.46507 * 119.99712 * 359.71817 * 14 13 12 16 16 H 1.09000 * 109.24451 * 35.34982 * 15 14 13 17 17 C 1.50539 * 109.62673 * 275.54397 * 15 14 13 18 18 C 1.29444 * 124.15680 * 222.78180 * 17 15 14 19 19 C 1.50066 * 124.07732 * 0.41228 * 18 17 15 20 20 C 1.53020 * 110.14740 * 342.87028 * 19 18 17 21 21 C 1.53021 * 109.35332 * 155.00171 * 15 14 13 22 22 C 1.38316 * 120.09682 * 359.48605 * 13 12 11 23 23 H 0.97004 * 119.99592 * 359.97438 * 1 2 3 24 24 H 1.08000 * 120.05634 * 359.97438 * 10 9 7 25 25 H 1.07995 * 119.84203 * 180.02562 * 11 10 9 26 26 H 1.08010 * 119.78390 * 180.27731 * 12 11 10 27 27 H 0.97000 * 120.00372 * 179.72435 * 14 13 12 28 28 H 1.07997 * 117.88486 * 42.70585 * 17 15 14 29 29 H 1.08004 * 117.96384 * 180.39066 * 18 17 15 30 30 H 1.09003 * 109.36207 * 222.65794 * 19 18 17 31 31 H 1.09004 * 109.24821 * 103.00594 * 19 18 17 32 32 H 1.09001 * 109.64284 * 289.74817 * 20 19 18 33 33 H 1.09005 * 109.82078 * 169.22015 * 20 19 18 34 34 H 1.08998 * 109.64384 * 49.96371 * 21 15 14 35 35 H 1.09000 * 109.64665 * 289.53632 * 21 15 14 36 36 H 1.08001 * 120.15874 * 180.23576 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3755 2.1124 -1.3938 5 1 1.5017 2.6169 0.8113 6 1 3.5923 1.4098 0.5825 7 6 2.0080 -1.2118 0.0005 8 1 1.5088 -2.1235 0.2941 9 6 3.3686 -1.2429 -0.3833 10 6 3.8630 -0.3111 -1.3158 11 6 5.1884 -0.3475 -1.6852 12 6 6.0407 -1.2937 -1.1400 13 6 5.5646 -2.2253 -0.2204 14 7 6.4316 -3.1782 0.3196 15 6 7.8392 -3.2011 -0.0861 16 1 8.1824 -2.1797 -0.2505 17 6 7.9851 -3.9876 -1.3614 18 6 8.9318 -4.8419 -1.5841 19 6 10.0129 -5.1750 -0.5981 20 6 10.0904 -4.0956 0.4838 21 6 8.6757 -3.8451 1.0215 22 6 4.2359 -2.2046 0.1633 23 1 -0.4850 0.8401 0.0004 24 1 3.2031 0.4306 -1.7411 25 1 5.5668 0.3679 -2.4003 26 1 7.0802 -1.3116 -1.4327 27 1 6.1017 -3.8247 0.9630 28 1 7.2525 -3.8296 -2.1389 29 1 8.9443 -5.3465 -2.5389 30 1 10.9694 -5.2356 -1.1172 31 1 9.7922 -6.1364 -0.1340 32 1 10.4878 -3.1754 0.0554 33 1 10.7367 -4.4310 1.2950 34 1 8.2239 -4.7915 1.3187 35 1 8.7236 -3.1761 1.8807 36 1 3.8665 -2.9240 0.8791 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313430530.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:26 Heat of formation + Delta-G solvation = 8.035158 kcal Electronic energy + Delta-G solvation = -16752.223227 eV Core-core repulsion = 14199.629179 eV Total energy + Delta-G solvation = -2552.594048 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.34485 -39.02406 -36.16565 -34.89058 -32.11347 -31.90209 -31.26186 -28.42031 -27.02046 -24.00070 -23.39256 -22.57320 -21.87226 -19.31107 -18.83212 -17.74674 -17.49229 -16.59268 -16.39299 -16.15972 -15.18321 -14.76455 -14.70281 -14.44501 -14.17763 -13.80604 -13.65665 -13.46747 -13.33772 -13.11318 -12.74288 -12.60159 -12.34442 -11.95065 -11.59329 -11.51490 -11.38990 -11.29571 -11.03801 -10.49690 -9.96312 -9.47921 -8.87298 -8.08783 -6.49878 0.85859 1.09187 1.29715 1.35232 1.44256 1.53510 2.17718 2.66996 2.78474 3.60247 3.81014 3.87492 4.08495 4.28722 4.36385 4.43725 4.49670 4.63183 4.68377 4.72587 4.79344 4.92369 5.01179 5.05408 5.09728 5.14377 5.21012 5.35623 5.42644 5.54626 5.73062 5.78507 5.86648 5.99520 6.01721 6.12292 6.38824 6.70608 6.82986 6.90959 7.10825 8.21792 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.049598 B = 0.005016 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.403339 B = 5580.428407 C = 5686.917585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.050 3.950 3 Si 0.972 3.028 4 H -0.259 1.259 5 H -0.279 1.279 6 H -0.256 1.256 7 C -0.490 4.490 8 H 0.051 0.949 9 C 0.107 3.893 10 C -0.293 4.293 11 C -0.048 4.048 12 C -0.291 4.291 13 C 0.245 3.755 14 N -0.743 5.743 15 C 0.185 3.815 16 H 0.075 0.925 17 C -0.182 4.182 18 C -0.143 4.143 19 C -0.091 4.091 20 C -0.113 4.113 21 C -0.121 4.121 22 C -0.298 4.298 23 H 0.293 0.707 24 H 0.092 0.908 25 H 0.125 0.875 26 H 0.121 0.879 27 H 0.397 0.603 28 H 0.081 0.919 29 H 0.108 0.892 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.891 -5.655 0.092 20.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.164 4.164 3 Si 0.796 3.204 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.179 1.179 7 C -0.520 4.520 8 H 0.069 0.931 9 C 0.104 3.896 10 C -0.314 4.314 11 C -0.067 4.067 12 C -0.313 4.313 13 C 0.143 3.857 14 N -0.373 5.373 15 C 0.080 3.920 16 H 0.093 0.907 17 C -0.202 4.202 18 C -0.162 4.162 19 C -0.127 4.127 20 C -0.151 4.151 21 C -0.159 4.159 22 C -0.322 4.322 23 H 0.103 0.897 24 H 0.110 0.890 25 H 0.143 0.857 26 H 0.139 0.861 27 H 0.231 0.769 28 H 0.099 0.901 29 H 0.126 0.874 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 19.789 -5.540 0.034 20.550 hybrid contribution -0.993 0.255 0.045 1.026 sum 18.796 -5.285 0.078 19.525 Atomic orbital electron populations 1.69736 1.09187 1.31336 1.37853 1.26807 0.95276 1.04231 0.90119 0.85401 0.79425 0.76318 0.79303 1.18482 1.20549 1.17940 1.19452 0.94726 0.95491 1.42372 0.93058 1.17593 0.92031 0.91002 0.88940 1.20951 0.97017 1.06434 1.06987 1.20758 0.92526 0.96578 0.96839 1.20338 0.99719 1.02925 1.08336 1.17622 0.88820 0.88287 0.91009 1.44687 1.07961 1.35350 1.49309 1.19784 0.80958 0.98732 0.92501 0.90686 1.22637 0.99153 0.99765 0.98662 1.22290 0.96348 0.97256 1.00277 1.20544 0.97565 0.99261 0.95374 1.21586 0.95269 0.99396 0.98814 1.21826 0.96072 1.01094 0.96915 1.20517 0.92726 1.08369 1.10618 0.89705 0.89015 0.85715 0.86095 0.76857 0.90118 0.87363 0.89282 0.89964 0.91564 0.89308 0.91121 0.90950 0.88868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.85 13.93 21.82 0.30 -48.55 16 2 C 0.05 2.79 5.40 85.25 0.46 3.25 16 3 Si 0.97 45.25 24.52 68.60 1.68 46.93 16 4 H -0.26 -11.43 6.71 99.48 0.67 -10.76 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.26 -12.23 6.86 99.48 0.68 -11.55 16 7 C -0.49 -29.11 9.57 23.46 0.22 -28.89 16 8 H 0.05 3.27 8.06 -2.91 -0.02 3.25 16 9 C 0.11 5.83 5.10 -21.31 -0.11 5.72 16 10 C -0.29 -14.69 7.17 22.75 0.16 -14.52 16 11 C -0.05 -2.08 10.02 22.20 0.22 -1.86 16 12 C -0.29 -11.75 9.15 22.59 0.21 -11.55 16 13 C 0.24 10.22 6.62 38.16 0.25 10.48 16 14 N -0.74 -24.21 5.24 -322.87 -1.69 -25.90 16 15 C 0.19 4.82 2.43 44.20 0.11 4.93 16 16 H 0.08 2.08 6.47 -2.39 -0.02 2.07 16 17 C -0.18 -4.67 9.22 27.18 0.25 -4.42 16 18 C -0.14 -2.85 9.80 27.04 0.27 -2.59 16 19 C -0.09 -1.30 6.11 29.66 0.18 -1.12 16 20 C -0.11 -1.64 6.01 30.74 0.18 -1.46 16 21 C -0.12 -2.33 5.46 30.74 0.17 -2.16 16 22 C -0.30 -14.62 9.63 22.85 0.22 -14.40 16 23 H 0.29 14.99 8.30 -92.71 -0.77 14.23 16 24 H 0.09 4.60 4.73 -2.91 -0.01 4.59 16 25 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 26 H 0.12 4.22 6.15 -2.91 -0.02 4.21 16 27 H 0.40 11.95 8.59 -92.71 -0.80 11.15 16 28 H 0.08 2.47 8.06 -2.91 -0.02 2.44 16 29 H 0.11 1.97 8.06 -2.91 -0.02 1.94 16 30 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.07 0.99 8.13 -2.39 -0.02 0.97 16 33 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.07 1.32 8.11 -2.39 -0.02 1.30 16 35 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.09 4.49 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -63.73 289.39 3.30 -60.42 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: 0.21 Total: 25.69 kcal Atomic # 6 Polarization: -61.39 SS G_CDS: 2.80 Total: -58.59 kcal Atomic # 7 Polarization: -73.06 SS G_CDS: -1.39 Total: -74.45 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.68 Total: 46.93 kcal Total: -63.73 3.30 -60.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313430530.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.459 kcal (2) G-P(sol) polarization free energy of solvation -63.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds