Wall clock time and date at job start Mon Mar 30 2020 05:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86797 * 119.99795 * 2 1 4 4 H 1.48501 * 109.47139 * 269.99435 * 3 2 1 5 5 H 1.48500 * 109.47698 * 29.99781 * 3 2 1 6 6 H 1.48507 * 109.46854 * 149.99942 * 3 2 1 7 7 C 1.39920 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99891 * 197.88515 * 7 2 1 9 9 C 1.41409 * 120.00184 * 17.88866 * 7 2 1 10 10 C 1.40788 * 120.20789 * 204.42781 * 9 7 2 11 11 C 1.37642 * 119.89477 * 180.02562 * 10 9 7 12 12 C 1.38528 * 120.32531 * 0.02562 * 11 10 9 13 13 C 1.39295 * 120.42288 * 359.97438 * 12 11 10 14 14 N 1.39681 * 119.95107 * 180.27861 * 13 12 11 15 15 C 1.46504 * 120.00274 * 359.72779 * 14 13 12 16 16 H 1.08998 * 109.35433 * 324.72339 * 15 14 13 17 17 C 1.50073 * 109.35625 * 84.30542 * 15 14 13 18 18 C 1.29442 * 124.07376 * 137.34017 * 17 15 14 19 19 C 1.50078 * 124.07416 * 359.53331 * 18 17 15 20 20 C 1.53019 * 110.14576 * 17.12765 * 19 18 17 21 21 C 1.53015 * 109.35819 * 204.99944 * 15 14 13 22 22 C 1.38319 * 120.09705 * 0.02562 * 13 12 11 23 23 H 0.97000 * 120.00075 * 0.02562 * 1 2 3 24 24 H 1.07999 * 120.05765 * 0.04090 * 10 9 7 25 25 H 1.07999 * 119.84157 * 179.97438 * 11 10 9 26 26 H 1.07998 * 119.78991 * 180.02562 * 12 11 10 27 27 H 0.97004 * 119.99730 * 179.72310 * 14 13 12 28 28 H 1.07997 * 117.96262 * 317.32296 * 17 15 14 29 29 H 1.07990 * 117.96602 * 179.55795 * 18 17 15 30 30 H 1.09002 * 109.35469 * 256.92407 * 19 18 17 31 31 H 1.08994 * 109.35569 * 137.33966 * 19 18 17 32 32 H 1.08997 * 109.64419 * 190.87975 * 20 19 18 33 33 H 1.08997 * 109.81584 * 70.35323 * 20 19 18 34 34 H 1.09007 * 109.64569 * 310.03940 * 21 15 14 35 35 H 1.08995 * 109.64909 * 70.45988 * 21 15 14 36 36 H 1.07998 * 120.16150 * 180.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4899 2.0464 -1.4001 5 1 1.4398 2.6528 0.7000 6 1 3.5399 1.4402 0.7001 7 6 2.0079 -1.2118 0.0005 8 1 3.0488 -1.2342 0.2878 9 6 1.3521 -2.4070 -0.3751 10 6 1.8260 -3.6499 0.0860 11 6 1.1831 -4.8094 -0.2840 12 6 0.0714 -4.7599 -1.1091 13 6 -0.4089 -3.5374 -1.5731 14 7 -1.5341 -3.4986 -2.3998 15 6 -2.2048 -4.7434 -2.7832 16 1 -1.4612 -5.5304 -2.9089 17 6 -3.1689 -5.1416 -1.7043 18 6 -4.3633 -5.5878 -1.9275 19 6 -4.9545 -5.7596 -3.2962 20 6 -3.8480 -5.7502 -4.3532 21 6 -2.9488 -4.5328 -4.1036 22 6 0.2238 -2.3616 -1.2121 23 1 -0.4850 0.8400 -0.0004 24 1 2.6924 -3.6937 0.7293 25 1 1.5475 -5.7624 0.0698 26 1 -0.4267 -5.6749 -1.3937 27 1 -1.8715 -2.6474 -2.7200 28 1 -2.8460 -5.0506 -0.6777 29 1 -4.9725 -5.8524 -1.0760 30 1 -5.6502 -4.9442 -3.4943 31 1 -5.4899 -6.7079 -3.3420 32 1 -4.2909 -5.6810 -5.3467 33 1 -3.2576 -6.6634 -4.2782 34 1 -3.5601 -3.6326 -4.0402 35 1 -2.2303 -4.4312 -4.9169 36 1 -0.1479 -1.4132 -1.5709 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313430532.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:29 Heat of formation + Delta-G solvation = 23.329521 kcal Electronic energy + Delta-G solvation = -16829.715860 eV Core-core repulsion = 14277.785025 eV Total energy + Delta-G solvation = -2551.930835 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.87556 -37.25383 -34.36218 -33.10294 -30.91934 -29.70521 -29.39332 -26.64179 -25.18140 -22.65136 -22.25485 -20.77900 -19.81444 -17.74629 -17.19572 -16.29738 -15.52721 -14.97188 -14.69495 -14.30794 -13.69559 -13.49854 -13.02877 -12.73998 -12.61082 -12.36611 -12.17653 -11.90374 -11.62938 -11.21814 -11.09338 -10.99250 -10.61294 -10.50886 -10.34385 -10.16560 -9.56549 -9.42424 -9.21566 -8.83616 -8.72941 -7.27275 -6.69647 -6.12918 -4.27903 2.49433 2.89666 3.11922 3.15632 3.26903 3.37430 4.00344 4.36506 4.74232 4.84545 4.86955 5.08098 5.34900 5.50166 5.60613 5.63341 5.73414 5.87305 5.88316 5.93517 6.05350 6.30999 6.32059 6.46677 6.64861 6.85685 6.92556 7.08251 7.17070 7.21239 7.42446 7.48147 7.85954 8.00205 8.15162 8.21384 8.53032 8.75857 8.87979 9.04989 9.16055 10.29102 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.032519 B = 0.005507 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.830984 B = 5083.537101 C = 5571.294909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.078 3.922 3 Si 0.904 3.096 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.466 4.466 8 H 0.076 0.924 9 C 0.139 3.861 10 C -0.258 4.258 11 C -0.066 4.066 12 C -0.300 4.300 13 C 0.216 3.784 14 N -0.752 5.752 15 C 0.188 3.812 16 H 0.082 0.918 17 C -0.146 4.146 18 C -0.173 4.173 19 C -0.087 4.087 20 C -0.116 4.116 21 C -0.125 4.125 22 C -0.232 4.232 23 H 0.277 0.723 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.389 0.611 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.595 -6.237 -6.634 11.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.139 4.139 3 Si 0.729 3.271 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.496 4.496 8 H 0.094 0.906 9 C 0.136 3.864 10 C -0.278 4.278 11 C -0.085 4.085 12 C -0.323 4.323 13 C 0.118 3.882 14 N -0.384 5.384 15 C 0.082 3.918 16 H 0.099 0.901 17 C -0.166 4.166 18 C -0.192 4.192 19 C -0.124 4.124 20 C -0.154 4.154 21 C -0.163 4.163 22 C -0.256 4.256 23 H 0.088 0.912 24 H 0.106 0.894 25 H 0.103 0.897 26 H 0.105 0.895 27 H 0.223 0.777 28 H 0.124 0.876 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.810 -6.258 -6.616 11.997 hybrid contribution 0.125 1.094 0.183 1.116 sum -7.684 -5.165 -6.433 11.274 Atomic orbital electron populations 1.69873 1.07500 1.28732 1.35769 1.25868 0.94657 1.01059 0.92332 0.86386 0.80571 0.80947 0.79194 1.19409 1.20478 1.18686 1.19560 0.98097 0.91324 1.40575 0.90596 1.17322 0.90097 0.91823 0.87188 1.20860 1.04843 0.92949 1.09169 1.20287 0.95169 0.96224 0.96853 1.19923 1.04644 0.94441 1.13273 1.17662 0.86161 0.94299 0.90094 1.44486 1.31119 1.05984 1.56854 1.19468 0.92571 0.88861 0.90896 0.90071 1.22848 0.95459 0.97360 1.00950 1.21951 0.96695 1.03097 0.97425 1.20416 0.97706 1.01477 0.92830 1.21561 0.96976 0.98463 0.98376 1.21836 0.98717 0.98582 0.97186 1.20730 1.02703 0.95045 1.07096 0.91232 0.89441 0.89697 0.89531 0.77703 0.87582 0.88452 0.91334 0.91548 0.91726 0.91624 0.91571 0.91310 0.86557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.97 10.96 55.55 0.61 -20.36 16 2 C 0.08 2.01 5.14 -17.35 -0.09 1.92 16 3 Si 0.90 19.11 29.59 -169.99 -5.03 14.08 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.47 -12.74 9.05 -37.75 -0.34 -13.08 16 8 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 9 C 0.14 3.83 5.57 -106.85 -0.60 3.23 16 10 C -0.26 -6.61 9.79 -38.84 -0.38 -6.99 16 11 C -0.07 -1.56 10.02 -39.69 -0.40 -1.96 16 12 C -0.30 -6.91 9.13 -39.08 -0.36 -7.26 16 13 C 0.22 5.09 6.61 -83.86 -0.55 4.54 16 14 N -0.75 -14.57 5.22 -53.63 -0.28 -14.85 16 15 C 0.19 3.02 2.42 -69.38 -0.17 2.85 16 16 H 0.08 1.37 6.49 -51.93 -0.34 1.04 16 17 C -0.15 -2.31 9.12 -35.90 -0.33 -2.64 16 18 C -0.17 -2.28 9.80 -35.89 -0.35 -2.64 16 19 C -0.09 -0.94 6.12 -28.17 -0.17 -1.11 16 20 C -0.12 -1.23 6.01 -26.52 -0.16 -1.39 16 21 C -0.13 -1.60 5.48 -26.52 -0.15 -1.75 16 22 C -0.23 -6.14 8.54 -38.67 -0.33 -6.47 16 23 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 24 H 0.09 2.13 8.06 -52.49 -0.42 1.70 16 25 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 26 H 0.09 1.81 6.13 -52.49 -0.32 1.49 16 27 H 0.39 7.25 8.59 -40.82 -0.35 6.90 16 28 H 0.11 1.91 8.06 -52.49 -0.42 1.49 16 29 H 0.10 1.20 8.06 -52.49 -0.42 0.77 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 34 H 0.07 0.84 8.11 -51.93 -0.42 0.42 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.12 3.17 6.16 -52.49 -0.32 2.85 16 LS Contribution 294.49 15.07 4.44 4.44 Total: -1.00 -28.12 294.49 -9.74 -37.87 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -5.11 Total: 11.57 kcal Atomic # 6 Polarization: -28.37 SS G_CDS: -4.37 Total: -32.74 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.33 Total: -35.21 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.12 -9.74 -37.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313430532.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.195 kcal (2) G-P(sol) polarization free energy of solvation -28.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds