Wall clock time and date at job start Mon Mar 30 2020 05:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86797 * 119.99795 * 2 1 4 4 H 1.48501 * 109.47139 * 269.99435 * 3 2 1 5 5 H 1.48500 * 109.47698 * 29.99781 * 3 2 1 6 6 H 1.48507 * 109.46854 * 149.99942 * 3 2 1 7 7 C 1.39920 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99891 * 197.88515 * 7 2 1 9 9 C 1.41409 * 120.00184 * 17.88866 * 7 2 1 10 10 C 1.40788 * 120.20789 * 204.42781 * 9 7 2 11 11 C 1.37642 * 119.89477 * 180.02562 * 10 9 7 12 12 C 1.38528 * 120.32531 * 0.02562 * 11 10 9 13 13 C 1.39295 * 120.42288 * 359.97438 * 12 11 10 14 14 N 1.39681 * 119.95107 * 180.27861 * 13 12 11 15 15 C 1.46504 * 120.00274 * 359.72779 * 14 13 12 16 16 H 1.08998 * 109.35433 * 324.72339 * 15 14 13 17 17 C 1.50073 * 109.35625 * 84.30542 * 15 14 13 18 18 C 1.29442 * 124.07376 * 137.34017 * 17 15 14 19 19 C 1.50078 * 124.07416 * 359.53331 * 18 17 15 20 20 C 1.53019 * 110.14576 * 17.12765 * 19 18 17 21 21 C 1.53015 * 109.35819 * 204.99944 * 15 14 13 22 22 C 1.38319 * 120.09705 * 0.02562 * 13 12 11 23 23 H 0.97000 * 120.00075 * 0.02562 * 1 2 3 24 24 H 1.07999 * 120.05765 * 0.04090 * 10 9 7 25 25 H 1.07999 * 119.84157 * 179.97438 * 11 10 9 26 26 H 1.07998 * 119.78991 * 180.02562 * 12 11 10 27 27 H 0.97004 * 119.99730 * 179.72310 * 14 13 12 28 28 H 1.07997 * 117.96262 * 317.32296 * 17 15 14 29 29 H 1.07990 * 117.96602 * 179.55795 * 18 17 15 30 30 H 1.09002 * 109.35469 * 256.92407 * 19 18 17 31 31 H 1.08994 * 109.35569 * 137.33966 * 19 18 17 32 32 H 1.08997 * 109.64419 * 190.87975 * 20 19 18 33 33 H 1.08997 * 109.81584 * 70.35323 * 20 19 18 34 34 H 1.09007 * 109.64569 * 310.03940 * 21 15 14 35 35 H 1.08995 * 109.64909 * 70.45988 * 21 15 14 36 36 H 1.07998 * 120.16150 * 180.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4899 2.0464 -1.4001 5 1 1.4398 2.6528 0.7000 6 1 3.5399 1.4402 0.7001 7 6 2.0079 -1.2118 0.0005 8 1 3.0488 -1.2342 0.2878 9 6 1.3521 -2.4070 -0.3751 10 6 1.8260 -3.6499 0.0860 11 6 1.1831 -4.8094 -0.2840 12 6 0.0714 -4.7599 -1.1091 13 6 -0.4089 -3.5374 -1.5731 14 7 -1.5341 -3.4986 -2.3998 15 6 -2.2048 -4.7434 -2.7832 16 1 -1.4612 -5.5304 -2.9089 17 6 -3.1689 -5.1416 -1.7043 18 6 -4.3633 -5.5878 -1.9275 19 6 -4.9545 -5.7596 -3.2962 20 6 -3.8480 -5.7502 -4.3532 21 6 -2.9488 -4.5328 -4.1036 22 6 0.2238 -2.3616 -1.2121 23 1 -0.4850 0.8400 -0.0004 24 1 2.6924 -3.6937 0.7293 25 1 1.5475 -5.7624 0.0698 26 1 -0.4267 -5.6749 -1.3937 27 1 -1.8715 -2.6474 -2.7200 28 1 -2.8460 -5.0506 -0.6777 29 1 -4.9725 -5.8524 -1.0760 30 1 -5.6502 -4.9442 -3.4943 31 1 -5.4899 -6.7079 -3.3420 32 1 -4.2909 -5.6810 -5.3467 33 1 -3.2576 -6.6634 -4.2782 34 1 -3.5601 -3.6326 -4.0402 35 1 -2.2303 -4.4312 -4.9169 36 1 -0.1479 -1.4132 -1.5709 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313430532.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:29 Heat of formation + Delta-G solvation = 8.974853 kcal Electronic energy + Delta-G solvation = -16830.338325 eV Core-core repulsion = 14277.785025 eV Total energy + Delta-G solvation = -2552.553300 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.24636 -38.88695 -36.03828 -34.88834 -31.97775 -31.34434 -31.12967 -28.21005 -27.14208 -23.95949 -23.37567 -22.52478 -21.62279 -19.10100 -18.85897 -17.72461 -17.14145 -16.59540 -16.35324 -15.92300 -14.85808 -14.78447 -14.68240 -14.37486 -14.01286 -13.64111 -13.48470 -13.42235 -13.25863 -12.82427 -12.76552 -12.52893 -12.18044 -11.96846 -11.57982 -11.49966 -11.30670 -11.29077 -11.01805 -10.46178 -9.95982 -9.25991 -8.62478 -7.91832 -6.32876 1.07867 1.28717 1.38136 1.38244 1.51384 1.58487 2.22867 2.79797 2.90082 3.77872 3.84999 3.90939 4.09017 4.29489 4.45356 4.48567 4.53911 4.65705 4.75574 4.81918 4.93772 4.99474 5.05399 5.13772 5.19410 5.29554 5.35618 5.39906 5.46932 5.60383 5.73518 5.92659 6.03557 6.11590 6.21099 6.26670 6.57894 6.93902 7.04943 7.06826 7.25271 8.38099 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.032519 B = 0.005507 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.830984 B = 5083.537101 C = 5571.294909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.037 3.963 3 Si 0.981 3.019 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.505 4.505 8 H 0.072 0.928 9 C 0.109 3.891 10 C -0.286 4.286 11 C -0.063 4.063 12 C -0.302 4.302 13 C 0.222 3.778 14 N -0.747 5.747 15 C 0.188 3.812 16 H 0.071 0.929 17 C -0.181 4.181 18 C -0.144 4.144 19 C -0.089 4.089 20 C -0.111 4.111 21 C -0.120 4.120 22 C -0.261 4.261 23 H 0.285 0.715 24 H 0.090 0.910 25 H 0.117 0.883 26 H 0.110 0.890 27 H 0.391 0.609 28 H 0.074 0.926 29 H 0.108 0.892 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.091 -6.940 -7.926 13.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.177 4.177 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.534 4.534 8 H 0.090 0.910 9 C 0.106 3.894 10 C -0.306 4.306 11 C -0.082 4.082 12 C -0.325 4.325 13 C 0.121 3.879 14 N -0.378 5.378 15 C 0.083 3.917 16 H 0.089 0.911 17 C -0.201 4.201 18 C -0.163 4.163 19 C -0.126 4.126 20 C -0.149 4.149 21 C -0.158 4.158 22 C -0.285 4.285 23 H 0.095 0.905 24 H 0.108 0.892 25 H 0.135 0.865 26 H 0.128 0.872 27 H 0.225 0.775 28 H 0.093 0.907 29 H 0.126 0.874 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.341 -6.991 -7.927 14.105 hybrid contribution 0.445 1.173 0.567 1.376 sum -8.896 -5.819 -7.360 12.930 Atomic orbital electron populations 1.69934 1.08973 1.30120 1.35937 1.26727 0.95462 1.04342 0.91207 0.85233 0.79094 0.76032 0.79466 1.18702 1.19227 1.18297 1.19816 0.98272 0.92712 1.42643 0.90990 1.17721 0.90967 0.92854 0.87882 1.21020 1.05826 0.93348 1.10436 1.20650 0.94672 0.96914 0.95957 1.20224 1.04476 0.95083 1.12719 1.17772 0.86742 0.93686 0.89698 1.44635 1.29949 1.07682 1.55514 1.19652 0.92511 0.86798 0.92776 0.91083 1.22565 0.96974 1.01395 0.99200 1.22289 0.95282 0.99220 0.99549 1.20537 0.97913 1.03309 0.90814 1.21579 0.96486 0.97124 0.99733 1.21821 0.98938 0.99965 0.95079 1.20667 1.03762 0.95420 1.08678 0.90467 0.89163 0.86464 0.87248 0.77508 0.90747 0.87431 0.89979 0.89041 0.89127 0.91489 0.91426 0.90952 0.88230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.88 10.96 21.82 0.24 -44.64 16 2 C 0.04 1.96 5.14 85.25 0.44 2.40 16 3 Si 0.98 39.78 29.59 68.60 2.03 41.81 16 4 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 5 H -0.27 -10.25 7.11 99.48 0.71 -9.55 16 6 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 7 C -0.50 -28.80 9.05 23.46 0.21 -28.59 16 8 H 0.07 3.98 7.91 -2.91 -0.02 3.96 16 9 C 0.11 6.26 5.57 -21.31 -0.12 6.14 16 10 C -0.29 -15.12 9.79 22.75 0.22 -14.90 16 11 C -0.06 -2.98 10.02 22.20 0.22 -2.75 16 12 C -0.30 -13.92 9.13 22.59 0.21 -13.72 16 13 C 0.22 10.70 6.61 38.16 0.25 10.95 16 14 N -0.75 -29.22 5.22 -323.58 -1.69 -30.91 16 15 C 0.19 5.85 2.42 44.05 0.11 5.96 16 16 H 0.07 2.34 6.49 -2.39 -0.02 2.32 16 17 C -0.18 -5.58 9.12 27.04 0.25 -5.34 16 18 C -0.14 -3.47 9.80 27.04 0.27 -3.20 16 19 C -0.09 -1.55 6.12 29.66 0.18 -1.37 16 20 C -0.11 -1.96 6.01 30.73 0.18 -1.77 16 21 C -0.12 -2.80 5.48 30.73 0.17 -2.63 16 22 C -0.26 -14.41 8.54 22.86 0.20 -14.22 16 23 H 0.28 14.01 8.30 -92.71 -0.77 13.24 16 24 H 0.09 4.56 8.06 -2.91 -0.02 4.53 16 25 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 26 H 0.11 4.48 6.13 -2.91 -0.02 4.47 16 27 H 0.39 14.80 8.59 -92.70 -0.80 14.01 16 28 H 0.07 2.74 8.06 -2.91 -0.02 2.71 16 29 H 0.11 2.36 8.06 -2.92 -0.02 2.34 16 30 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.19 8.13 -2.39 -0.02 1.17 16 34 H 0.07 1.57 8.11 -2.38 -0.02 1.55 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.10 5.72 6.16 -2.91 -0.02 5.71 16 Total: -1.00 -63.14 294.49 3.63 -59.51 By element: Atomic # 1 Polarization: 36.99 SS G_CDS: 0.27 Total: 37.26 kcal Atomic # 6 Polarization: -65.82 SS G_CDS: 2.78 Total: -63.04 kcal Atomic # 7 Polarization: -74.10 SS G_CDS: -1.45 Total: -75.55 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Total: -63.14 3.63 -59.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313430532.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.485 kcal (2) G-P(sol) polarization free energy of solvation -63.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds