Wall clock time and date at job start Mon Mar 30 2020 05:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86797 * 120.00255 * 2 1 4 4 H 1.48500 * 109.46809 * 269.99464 * 3 2 1 5 5 H 1.48493 * 109.47340 * 30.00029 * 3 2 1 6 6 H 1.48502 * 109.47081 * 149.99879 * 3 2 1 7 7 C 1.39932 * 119.99567 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00118 * 168.16685 * 7 2 1 9 9 C 1.41404 * 120.00121 * 348.16918 * 7 2 1 10 10 C 1.40787 * 120.20663 * 328.87565 * 9 7 2 11 11 C 1.37650 * 119.89355 * 180.02562 * 10 9 7 12 12 C 1.38528 * 120.32341 * 0.02562 * 11 10 9 13 13 C 1.39288 * 120.42697 * 0.02562 * 12 11 10 14 14 N 1.39682 * 119.95415 * 179.97438 * 13 12 11 15 15 C 1.48153 * 111.00064 * 35.91177 * 14 13 12 16 16 C 1.52958 * 85.82933 * 136.92334 * 15 14 13 17 17 C 1.52800 * 121.29302 * 102.35515 * 16 15 14 18 18 C 1.53971 * 86.85208 * 150.84353 * 17 16 15 19 19 C 1.52811 * 121.29255 * 211.34283 * 16 15 14 20 20 C 1.48163 * 111.00356 * 135.54988 * 14 13 12 21 21 C 1.38320 * 120.09587 * 0.24605 * 13 12 11 22 22 H 0.97006 * 119.99341 * 0.02562 * 1 2 3 23 23 H 1.07997 * 120.05308 * 359.97213 * 10 9 7 24 24 H 1.08001 * 119.83862 * 179.97438 * 11 10 9 25 25 H 1.07999 * 119.78407 * 179.97438 * 12 11 10 26 26 H 1.09003 * 113.81529 * 22.70106 * 15 14 13 27 27 H 1.08997 * 113.81993 * 251.14978 * 15 14 13 28 28 H 1.09001 * 113.66917 * 265.35351 * 17 16 15 29 29 H 1.09000 * 113.67268 * 36.32999 * 17 16 15 30 30 H 1.09004 * 113.57272 * 90.00486 * 18 17 16 31 31 H 1.08993 * 113.57503 * 220.78328 * 18 17 16 32 32 H 1.08999 * 113.66807 * 323.57185 * 19 16 15 33 33 H 1.09003 * 113.67073 * 94.54787 * 19 16 15 34 34 H 1.08988 * 113.81876 * 108.84745 * 20 14 13 35 35 H 1.09001 * 113.80756 * 337.30286 * 20 14 13 36 36 H 1.08003 * 120.16519 * 179.70371 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4900 2.0462 -1.4001 5 1 1.4400 2.6526 0.7000 6 1 3.5399 1.4400 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0707 -1.2220 -0.1912 9 6 1.3233 -2.4233 0.2522 10 6 0.1997 -2.4390 1.1003 11 6 -0.4616 -3.6220 1.3411 12 6 -0.0266 -4.7986 0.7534 13 6 1.0842 -4.7987 -0.0871 14 7 1.5145 -5.9909 -0.6741 15 6 0.3638 -6.8552 -1.0257 16 6 1.1026 -7.1136 -2.3398 17 6 1.8679 -8.4146 -2.5775 18 6 1.5576 -8.2245 -4.0736 19 6 0.3426 -7.3813 -3.6383 20 6 1.8359 -5.7917 -2.1066 21 6 1.7651 -3.6209 -0.3368 22 1 -0.4849 0.8402 -0.0004 23 1 -0.1424 -1.5245 1.5618 24 1 -1.3232 -3.6331 1.9922 25 1 -0.5517 -5.7219 0.9487 26 1 -0.5736 -6.3123 -1.1472 27 1 0.2673 -7.7383 -0.3940 28 1 2.9294 -8.3476 -2.3389 29 1 1.3893 -9.2903 -2.1391 30 1 2.3167 -7.6524 -4.6071 31 1 1.2876 -9.1491 -4.5837 32 1 -0.5670 -7.9658 -3.5004 33 1 0.1856 -6.4895 -4.2452 34 1 2.9021 -5.8347 -2.3286 35 1 1.3409 -4.9291 -2.5528 36 1 2.6294 -3.6205 -0.9844 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313468330.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:29 Heat of formation + Delta-G solvation = 71.826114 kcal Electronic energy + Delta-G solvation = -17005.365458 eV Core-core repulsion = 14455.537593 eV Total energy + Delta-G solvation = -2549.827865 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.76899 -37.63997 -35.59718 -33.32891 -29.91030 -29.43723 -26.36535 -25.73705 -25.32178 -24.70655 -21.83479 -20.51932 -19.74832 -17.95213 -17.18864 -15.72193 -15.48721 -15.11801 -14.99911 -14.39053 -13.97599 -13.54077 -12.88205 -12.76554 -12.38785 -12.21238 -11.95791 -11.72948 -11.54257 -11.32370 -11.08069 -11.01394 -10.56693 -10.49246 -10.30504 -10.11728 -9.96356 -9.68265 -9.36821 -9.20984 -8.84697 -7.41147 -6.82496 -6.65808 -4.36875 2.79895 2.94236 3.08931 3.13546 3.21255 3.96553 4.33459 4.44633 4.64598 4.74288 4.83797 4.96192 5.43400 5.49154 5.71672 5.74520 5.75947 5.80084 5.92901 5.94847 6.00749 6.03555 6.13703 6.24111 6.41373 6.42500 6.45767 6.52495 6.93416 7.04603 7.16116 7.29138 7.46739 7.78900 7.93690 8.07864 8.11206 8.37478 8.67456 8.92931 8.99269 10.26911 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.035130 B = 0.005526 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.852214 B = 5065.658181 C = 5500.126603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.468 4.468 8 H 0.076 0.924 9 C 0.125 3.875 10 C -0.166 4.166 11 C -0.094 4.094 12 C -0.255 4.255 13 C 0.085 3.915 14 N -0.438 5.438 15 C 0.025 3.975 16 C -0.115 4.115 17 C -0.109 4.109 18 C -0.140 4.140 19 C -0.130 4.130 20 C 0.040 3.960 21 C -0.234 4.234 22 H 0.279 0.721 23 H 0.114 0.886 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.291 -9.817 -5.448 11.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.498 4.498 8 H 0.094 0.906 9 C 0.122 3.878 10 C -0.186 4.186 11 C -0.113 4.113 12 C -0.276 4.276 13 C -0.011 4.011 14 N -0.153 5.153 15 C -0.103 4.103 16 C -0.116 4.116 17 C -0.147 4.147 18 C -0.177 4.177 19 C -0.168 4.168 20 C -0.087 4.087 21 C -0.256 4.256 22 H 0.089 0.911 23 H 0.132 0.868 24 H 0.107 0.893 25 H 0.107 0.893 26 H 0.095 0.905 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.610 -9.911 -5.013 11.123 hybrid contribution -0.294 1.234 -0.332 1.311 sum 0.316 -8.677 -5.345 10.196 Atomic orbital electron populations 1.69812 1.07418 1.28952 1.36811 1.25854 0.94780 1.01070 0.92366 0.86313 0.80519 0.80744 0.79115 1.19592 1.20182 1.18562 1.19511 0.96085 0.90542 1.43662 0.90603 1.17475 0.90944 0.91678 0.87668 1.21257 0.99572 0.96343 1.01438 1.20557 0.98404 0.93237 0.99119 1.20173 1.01262 0.97108 1.09077 1.19066 0.94827 0.89296 0.97920 1.65807 1.25380 1.11659 1.12481 1.23754 0.94149 0.97816 0.94547 1.22943 0.97876 0.96156 0.94628 1.22545 1.00384 0.96081 0.95653 1.22868 0.98449 0.99889 0.96488 1.22800 0.97235 1.00160 0.96567 1.23627 1.00823 0.95243 0.89017 1.20787 1.04241 0.92225 1.08310 0.91061 0.86813 0.89299 0.89255 0.90466 0.90084 0.91179 0.90063 0.90295 0.91749 0.90036 0.91311 0.89877 0.90225 0.88777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.16 11.06 55.55 0.61 -20.54 16 2 C 0.08 1.93 5.21 -17.34 -0.09 1.84 16 3 Si 0.91 19.00 29.58 -169.99 -5.03 13.98 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.47 -12.64 9.04 -37.74 -0.34 -12.98 16 8 H 0.08 1.98 7.87 -52.49 -0.41 1.57 16 9 C 0.13 3.41 5.51 -106.85 -0.59 2.82 16 10 C -0.17 -4.41 8.64 -38.83 -0.34 -4.75 16 11 C -0.09 -2.26 10.02 -39.69 -0.40 -2.66 16 12 C -0.25 -5.87 8.76 -39.08 -0.34 -6.21 16 13 C 0.08 1.96 5.40 -83.86 -0.45 1.50 16 14 N -0.44 -8.55 6.35 -179.51 -1.14 -9.69 16 15 C 0.02 0.41 6.51 -3.16 -0.02 0.39 16 16 C -0.12 -1.62 1.26 -154.88 -0.19 -1.81 16 17 C -0.11 -1.28 7.85 -26.33 -0.21 -1.49 16 18 C -0.14 -1.45 8.10 -25.62 -0.21 -1.66 16 19 C -0.13 -1.53 7.86 -26.22 -0.21 -1.74 16 20 C 0.04 0.68 6.66 -3.15 -0.02 0.66 16 21 C -0.23 -5.90 8.67 -38.67 -0.34 -6.24 16 22 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 23 H 0.11 3.10 6.44 -52.49 -0.34 2.77 16 24 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 25 H 0.09 1.86 7.05 -52.49 -0.37 1.49 16 26 H 0.08 1.33 7.21 -51.93 -0.37 0.96 16 27 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.33 8.14 -51.94 -0.42 0.90 16 35 H 0.08 1.47 7.57 -51.93 -0.39 1.07 16 36 H 0.09 2.29 7.47 -52.48 -0.39 1.90 16 LS Contribution 292.91 15.07 4.41 4.41 Total: -1.00 -27.98 292.91 -10.10 -38.08 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -5.22 Total: 6.10 kcal Atomic # 6 Polarization: -28.59 SS G_CDS: -3.74 Total: -32.33 kcal Atomic # 7 Polarization: -29.71 SS G_CDS: -0.52 Total: -30.23 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.98 -10.10 -38.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313468330.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.901 kcal (2) G-P(sol) polarization free energy of solvation -27.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds