Wall clock time and date at job start Mon Mar 30 2020 05:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86797 * 120.00255 * 2 1 4 4 H 1.48500 * 109.46809 * 269.99464 * 3 2 1 5 5 H 1.48493 * 109.47340 * 30.00029 * 3 2 1 6 6 H 1.48502 * 109.47081 * 149.99879 * 3 2 1 7 7 C 1.39932 * 119.99567 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00118 * 168.16685 * 7 2 1 9 9 C 1.41404 * 120.00121 * 348.16918 * 7 2 1 10 10 C 1.40787 * 120.20663 * 328.87565 * 9 7 2 11 11 C 1.37650 * 119.89355 * 180.02562 * 10 9 7 12 12 C 1.38528 * 120.32341 * 0.02562 * 11 10 9 13 13 C 1.39288 * 120.42697 * 0.02562 * 12 11 10 14 14 N 1.39682 * 119.95415 * 179.97438 * 13 12 11 15 15 C 1.48153 * 111.00064 * 35.91177 * 14 13 12 16 16 C 1.52958 * 85.82933 * 136.92334 * 15 14 13 17 17 C 1.52800 * 121.29302 * 102.35515 * 16 15 14 18 18 C 1.53971 * 86.85208 * 150.84353 * 17 16 15 19 19 C 1.52811 * 121.29255 * 211.34283 * 16 15 14 20 20 C 1.48163 * 111.00356 * 135.54988 * 14 13 12 21 21 C 1.38320 * 120.09587 * 0.24605 * 13 12 11 22 22 H 0.97006 * 119.99341 * 0.02562 * 1 2 3 23 23 H 1.07997 * 120.05308 * 359.97213 * 10 9 7 24 24 H 1.08001 * 119.83862 * 179.97438 * 11 10 9 25 25 H 1.07999 * 119.78407 * 179.97438 * 12 11 10 26 26 H 1.09003 * 113.81529 * 22.70106 * 15 14 13 27 27 H 1.08997 * 113.81993 * 251.14978 * 15 14 13 28 28 H 1.09001 * 113.66917 * 265.35351 * 17 16 15 29 29 H 1.09000 * 113.67268 * 36.32999 * 17 16 15 30 30 H 1.09004 * 113.57272 * 90.00486 * 18 17 16 31 31 H 1.08993 * 113.57503 * 220.78328 * 18 17 16 32 32 H 1.08999 * 113.66807 * 323.57185 * 19 16 15 33 33 H 1.09003 * 113.67073 * 94.54787 * 19 16 15 34 34 H 1.08988 * 113.81876 * 108.84745 * 20 14 13 35 35 H 1.09001 * 113.80756 * 337.30286 * 20 14 13 36 36 H 1.08003 * 120.16519 * 179.70371 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4900 2.0462 -1.4001 5 1 1.4400 2.6526 0.7000 6 1 3.5399 1.4400 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0707 -1.2220 -0.1912 9 6 1.3233 -2.4233 0.2522 10 6 0.1997 -2.4390 1.1003 11 6 -0.4616 -3.6220 1.3411 12 6 -0.0266 -4.7986 0.7534 13 6 1.0842 -4.7987 -0.0871 14 7 1.5145 -5.9909 -0.6741 15 6 0.3638 -6.8552 -1.0257 16 6 1.1026 -7.1136 -2.3398 17 6 1.8679 -8.4146 -2.5775 18 6 1.5576 -8.2245 -4.0736 19 6 0.3426 -7.3813 -3.6383 20 6 1.8359 -5.7917 -2.1066 21 6 1.7651 -3.6209 -0.3368 22 1 -0.4849 0.8402 -0.0004 23 1 -0.1424 -1.5245 1.5618 24 1 -1.3232 -3.6331 1.9922 25 1 -0.5517 -5.7219 0.9487 26 1 -0.5736 -6.3123 -1.1472 27 1 0.2673 -7.7383 -0.3940 28 1 2.9294 -8.3476 -2.3389 29 1 1.3893 -9.2903 -2.1391 30 1 2.3167 -7.6524 -4.6071 31 1 1.2876 -9.1491 -4.5837 32 1 -0.5670 -7.9658 -3.5004 33 1 0.1856 -6.4895 -4.2452 34 1 2.9021 -5.8347 -2.3286 35 1 1.3409 -4.9291 -2.5528 36 1 2.6294 -3.6205 -0.9844 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313468330.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:28 Heat of formation + Delta-G solvation = 56.624592 kcal Electronic energy + Delta-G solvation = -17006.024646 eV Core-core repulsion = 14455.537593 eV Total energy + Delta-G solvation = -2550.487052 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.10398 -39.28088 -37.06257 -35.20031 -31.85392 -31.13511 -27.96875 -26.97068 -26.60655 -26.39045 -23.05748 -22.40612 -21.46458 -19.29370 -18.79853 -17.44747 -16.90320 -16.48316 -16.38866 -16.21212 -15.53370 -15.08247 -14.41866 -14.22136 -14.15526 -13.47771 -13.44545 -13.21653 -12.97731 -12.83905 -12.69834 -12.37197 -12.32263 -12.12074 -11.84512 -11.34052 -11.23454 -11.15984 -11.09379 -10.90757 -10.50161 -9.38412 -8.68445 -8.54181 -6.40994 0.94677 1.01984 1.36875 1.47850 1.52113 2.20736 2.69391 3.00871 3.30389 3.60013 3.76433 3.85136 3.96797 4.19885 4.26411 4.48048 4.53988 4.57510 4.59506 4.71274 4.81642 4.87383 4.91266 4.94214 4.99433 5.06461 5.13128 5.20597 5.22975 5.40114 5.48228 5.55201 5.62490 5.92080 6.01535 6.12303 6.18724 6.47371 6.71183 6.93193 7.01983 8.36818 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.035130 B = 0.005526 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.852214 B = 5065.658181 C = 5500.126603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.035 3.965 3 Si 0.984 3.016 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.260 1.260 7 C -0.505 4.505 8 H 0.071 0.929 9 C 0.097 3.903 10 C -0.195 4.195 11 C -0.093 4.093 12 C -0.257 4.257 13 C 0.093 3.907 14 N -0.451 5.451 15 C 0.024 3.976 16 C -0.109 4.109 17 C -0.105 4.105 18 C -0.129 4.129 19 C -0.128 4.128 20 C 0.035 3.965 21 C -0.255 4.255 22 H 0.287 0.713 23 H 0.097 0.903 24 H 0.115 0.885 25 H 0.117 0.883 26 H 0.067 0.933 27 H 0.099 0.901 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.059 0.941 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.177 -11.344 -6.214 12.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.179 4.179 3 Si 0.804 3.196 4 H -0.187 1.187 5 H -0.189 1.189 6 H -0.184 1.184 7 C -0.535 4.535 8 H 0.089 0.911 9 C 0.094 3.906 10 C -0.215 4.215 11 C -0.112 4.112 12 C -0.278 4.278 13 C -0.004 4.004 14 N -0.166 5.166 15 C -0.103 4.103 16 C -0.110 4.110 17 C -0.142 4.142 18 C -0.166 4.166 19 C -0.165 4.165 20 C -0.092 4.092 21 C -0.276 4.276 22 H 0.097 0.903 23 H 0.115 0.885 24 H 0.133 0.867 25 H 0.135 0.865 26 H 0.086 0.914 27 H 0.118 0.882 28 H 0.085 0.915 29 H 0.117 0.883 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.116 0.884 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.490 -11.469 -5.789 12.857 hybrid contribution -0.286 1.566 -0.103 1.595 sum 0.204 -9.903 -5.893 11.525 Atomic orbital electron populations 1.69872 1.08866 1.30364 1.36962 1.26721 0.95597 1.04327 0.91214 0.85183 0.78973 0.75908 0.79490 1.18660 1.18914 1.18423 1.19756 0.96167 0.91848 1.45770 0.91051 1.17829 0.91734 0.92657 0.88346 1.21198 1.00691 0.96787 1.02847 1.20860 0.98682 0.92742 0.98928 1.20499 1.01165 0.97789 1.08369 1.19296 0.93949 0.90004 0.97107 1.65766 1.26842 1.10221 1.13808 1.23852 0.92843 0.97382 0.96250 1.22913 0.97797 0.95631 0.94665 1.22611 0.99963 0.94982 0.96646 1.22830 0.97427 1.00526 0.95802 1.22856 0.98387 1.00486 0.94813 1.23616 1.01498 0.96624 0.87415 1.20860 1.04890 0.92866 1.09021 0.90272 0.88469 0.86730 0.86543 0.91434 0.88248 0.91539 0.88304 0.90276 0.89462 0.88396 0.91985 0.89276 0.92315 0.89116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.08 11.06 21.82 0.24 -44.83 16 2 C 0.04 1.83 5.21 85.25 0.44 2.27 16 3 Si 0.98 39.47 29.58 68.60 2.03 41.50 16 4 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 5 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 6 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 7 C -0.51 -28.49 9.04 23.46 0.21 -28.28 16 8 H 0.07 3.91 7.87 -2.91 -0.02 3.89 16 9 C 0.10 5.51 5.51 -21.31 -0.12 5.40 16 10 C -0.20 -10.73 8.64 22.75 0.20 -10.53 16 11 C -0.09 -4.50 10.02 22.20 0.22 -4.28 16 12 C -0.26 -11.67 8.76 22.59 0.20 -11.47 16 13 C 0.09 4.32 5.40 38.16 0.21 4.53 16 14 N -0.45 -17.30 6.35 -721.84 -4.58 -21.88 16 15 C 0.02 0.73 6.51 86.05 0.56 1.29 16 16 C -0.11 -2.84 1.26 -52.30 -0.07 -2.91 16 17 C -0.10 -2.12 7.85 30.86 0.24 -1.87 16 18 C -0.13 -2.23 8.10 31.31 0.25 -1.98 16 19 C -0.13 -2.67 7.86 30.93 0.24 -2.42 16 20 C 0.04 1.20 6.66 86.04 0.57 1.77 16 21 C -0.25 -13.32 8.67 22.86 0.20 -13.12 16 22 H 0.29 13.99 8.30 -92.70 -0.77 13.22 16 23 H 0.10 5.55 6.44 -2.91 -0.02 5.53 16 24 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 25 H 0.12 4.60 7.05 -2.91 -0.02 4.58 16 26 H 0.07 2.22 7.21 -2.39 -0.02 2.20 16 27 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 28 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 35 H 0.06 2.22 7.57 -2.39 -0.02 2.20 16 36 H 0.09 4.64 7.47 -2.91 -0.02 4.62 16 Total: -1.00 -61.98 292.91 2.11 -59.87 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: 1.05 Total: 26.95 kcal Atomic # 6 Polarization: -64.98 SS G_CDS: 3.37 Total: -61.61 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: -4.34 Total: -66.71 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Total: -61.98 2.11 -59.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313468330.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.493 kcal (2) G-P(sol) polarization free energy of solvation -61.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds