Wall clock time and date at job start Mon Mar 30 2020 05:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86797 * 120.00193 * 2 1 4 4 H 1.48503 * 109.47150 * 269.99499 * 3 2 1 5 5 H 1.48495 * 109.47151 * 30.00220 * 3 2 1 6 6 H 1.48507 * 109.47007 * 150.00222 * 3 2 1 7 7 C 1.39935 * 119.99751 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99772 * 197.88489 * 7 2 1 9 9 C 1.41405 * 119.99957 * 17.88052 * 7 2 1 10 10 C 1.40786 * 120.20951 * 204.43015 * 9 7 2 11 11 C 1.37645 * 119.89589 * 179.79288 * 10 9 7 12 12 C 1.38519 * 120.32423 * 0.48690 * 11 10 9 13 13 C 1.39301 * 120.42383 * 359.48477 * 12 11 10 14 14 N 1.39682 * 119.95087 * 180.25492 * 13 12 11 15 15 C 1.46493 * 120.00388 * 0.02562 * 14 13 12 16 16 H 1.09010 * 110.43552 * 325.69865 * 15 14 13 17 17 C 1.54887 * 110.48832 * 88.23914 * 15 14 13 18 18 C 1.54477 * 102.94649 * 156.08128 * 17 15 14 19 19 C 1.54275 * 104.54513 * 322.97733 * 18 17 15 20 20 H 1.08999 * 117.40988 * 242.73466 * 19 18 17 21 21 C 1.52999 * 118.68900 * 86.92347 * 19 18 17 22 22 C 1.53003 * 60.37779 * 266.65785 * 21 19 18 23 23 H 1.09003 * 119.74991 * 248.88005 * 22 21 19 24 24 C 1.38312 * 120.09675 * 0.28111 * 13 12 11 25 25 H 0.97006 * 119.99702 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.04927 * 0.04159 * 10 9 7 27 27 H 1.08000 * 119.84381 * 180.25352 * 11 10 9 28 28 H 1.08003 * 119.78941 * 179.76950 * 12 11 10 29 29 H 0.97005 * 119.99974 * 180.02562 * 14 13 12 30 30 H 1.09000 * 110.75861 * 274.93417 * 17 15 14 31 31 H 1.08998 * 110.75831 * 38.30715 * 17 15 14 32 32 H 1.08997 * 111.07920 * 203.79517 * 18 17 15 33 33 H 1.09000 * 109.55747 * 81.39018 * 18 17 15 34 34 H 1.08998 * 117.46241 * 159.05561 * 21 19 18 35 35 H 1.09006 * 117.46002 * 14.25245 * 21 19 18 36 36 H 1.07998 * 120.16675 * 179.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4899 2.0463 -1.4001 5 1 1.4399 2.6526 0.7001 6 1 3.5399 1.4400 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0487 -1.2346 0.2867 9 6 1.3520 -2.4067 -0.3771 10 6 1.8258 -3.6501 0.0829 11 6 1.1799 -4.8088 -0.2841 12 6 0.0710 -4.7590 -1.1127 13 6 -0.4096 -3.5360 -1.5753 14 7 -1.5317 -3.4969 -2.4061 15 6 -2.2027 -4.7412 -2.7901 16 1 -1.4767 -5.5469 -2.9001 17 6 -3.2799 -5.1214 -1.7440 18 6 -4.2516 -6.0077 -2.5543 19 6 -4.2933 -5.3585 -3.9531 20 1 -5.2502 -4.9642 -4.2951 21 6 -3.2408 -5.7690 -4.9850 22 6 -2.9948 -4.5459 -4.0993 23 1 -2.9966 -3.5493 -4.5408 24 6 0.2231 -2.3605 -1.2135 25 1 -0.4850 0.8401 -0.0004 26 1 2.6923 -3.6943 0.7261 27 1 1.5416 -5.7619 0.0726 28 1 -0.4270 -5.6738 -1.3984 29 1 -1.8668 -2.6457 -2.7290 30 1 -2.8369 -5.6776 -0.9179 31 1 -3.7956 -4.2327 -1.3801 32 1 -5.2451 -6.0117 -2.1058 33 1 -3.8557 -7.0214 -2.6158 34 1 -3.4706 -5.5910 -6.0355 35 1 -2.6564 -6.6655 -4.7776 36 1 -0.1482 -1.4118 -1.5718 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313491050.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:37 Heat of formation + Delta-G solvation = 25.935970 kcal Electronic energy + Delta-G solvation = -16868.924615 eV Core-core repulsion = 14317.106804 eV Total energy + Delta-G solvation = -2551.817811 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.74119 -39.24156 -36.14386 -34.90153 -32.18326 -31.34623 -30.09444 -27.19405 -26.88484 -23.66412 -23.03959 -21.86477 -21.20909 -20.57460 -19.11428 -17.63263 -17.23277 -16.57965 -16.38560 -15.58384 -15.34944 -14.64095 -14.45940 -14.30364 -14.05994 -13.71557 -13.63216 -13.15503 -12.78554 -12.71655 -12.53985 -12.22459 -12.20844 -12.01139 -11.68883 -11.52732 -11.32185 -11.10907 -11.02204 -10.58405 -10.41636 -9.25474 -8.62194 -7.89888 -6.32284 1.08283 1.33587 1.38199 1.51348 1.58544 2.22938 2.70634 2.75836 2.82918 3.53049 3.81732 3.90910 4.04332 4.19653 4.32341 4.50231 4.51921 4.57737 4.61666 4.72318 4.80158 4.91382 4.98822 5.07311 5.18190 5.19648 5.22424 5.26119 5.32525 5.41340 5.49172 5.62227 5.96687 6.11257 6.21667 6.28168 6.58781 6.94797 7.05725 7.07096 7.25570 8.38244 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.032385 B = 0.005548 C = 0.005055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.386665 B = 5045.489707 C = 5537.331431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.037 3.963 3 Si 0.981 3.019 4 H -0.263 1.263 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.505 4.505 8 H 0.072 0.928 9 C 0.108 3.892 10 C -0.286 4.286 11 C -0.062 4.062 12 C -0.303 4.303 13 C 0.223 3.777 14 N -0.746 5.746 15 C 0.182 3.818 16 H 0.071 0.929 17 C -0.136 4.136 18 C -0.088 4.088 19 C -0.156 4.156 20 H 0.123 0.877 21 C -0.136 4.136 22 C -0.192 4.192 23 H 0.107 0.893 24 C -0.261 4.261 25 H 0.285 0.715 26 H 0.090 0.910 27 H 0.118 0.882 28 H 0.111 0.889 29 H 0.390 0.610 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.116 0.884 35 H 0.096 0.904 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.457 -7.234 -7.560 13.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.178 4.178 3 Si 0.801 3.199 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.534 4.534 8 H 0.090 0.910 9 C 0.106 3.894 10 C -0.307 4.307 11 C -0.081 4.081 12 C -0.325 4.325 13 C 0.121 3.879 14 N -0.376 5.376 15 C 0.076 3.924 16 H 0.089 0.911 17 C -0.176 4.176 18 C -0.126 4.126 19 C -0.174 4.174 20 H 0.141 0.859 21 C -0.173 4.173 22 C -0.211 4.211 23 H 0.126 0.874 24 C -0.285 4.285 25 H 0.095 0.905 26 H 0.108 0.892 27 H 0.136 0.864 28 H 0.129 0.871 29 H 0.224 0.776 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.134 0.866 35 H 0.114 0.886 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.713 -7.279 -7.547 13.633 hybrid contribution 0.371 1.327 0.218 1.396 sum -8.341 -5.952 -7.329 12.599 Atomic orbital electron populations 1.69932 1.08948 1.30094 1.35909 1.26724 0.95471 1.04321 0.91243 0.85238 0.79118 0.76079 0.79421 1.18788 1.19212 1.18289 1.19814 0.98260 0.92735 1.42621 0.91015 1.17723 0.90967 0.92873 0.87886 1.21020 1.05783 0.93375 1.10503 1.20650 0.94642 0.96921 0.95880 1.20223 1.04608 0.95043 1.12658 1.17763 0.86695 0.93746 0.89650 1.44513 1.30462 1.07656 1.54978 1.21236 0.92489 0.86693 0.91973 0.91102 1.23043 0.96606 0.99629 0.98285 1.21814 0.99677 0.98470 0.92647 1.23365 0.93952 1.03404 0.96693 0.85896 1.23146 1.00475 0.96941 0.96725 1.23344 1.00849 0.97933 0.98967 0.87449 1.20652 1.03709 0.95414 1.08739 0.90481 0.89178 0.86365 0.87078 0.77608 0.92164 0.92572 0.89666 0.90643 0.86573 0.88576 0.88327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.69 10.96 21.82 0.24 -44.45 16 2 C 0.04 1.95 5.14 85.25 0.44 2.39 16 3 Si 0.98 39.76 29.59 68.60 2.03 41.79 16 4 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 5 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 6 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 7 C -0.50 -28.72 9.05 23.46 0.21 -28.51 16 8 H 0.07 3.96 7.91 -2.91 -0.02 3.94 16 9 C 0.11 6.22 5.57 -21.31 -0.12 6.10 16 10 C -0.29 -15.05 9.79 22.75 0.22 -14.83 16 11 C -0.06 -2.89 10.02 22.20 0.22 -2.67 16 12 C -0.30 -13.74 9.23 22.59 0.21 -13.53 16 13 C 0.22 10.65 6.64 38.16 0.25 10.90 16 14 N -0.75 -29.07 5.34 -314.07 -1.68 -30.75 16 15 C 0.18 5.62 2.66 46.06 0.12 5.74 16 16 H 0.07 2.30 6.49 -2.38 -0.02 2.28 16 17 C -0.14 -3.87 6.56 31.74 0.21 -3.66 16 18 C -0.09 -1.82 6.62 31.53 0.21 -1.61 16 19 C -0.16 -3.06 6.93 -10.07 -0.07 -3.13 16 20 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 21 C -0.14 -2.56 10.09 30.60 0.31 -2.25 16 22 C -0.19 -4.74 6.52 -10.07 -0.07 -4.80 16 23 H 0.11 2.70 8.03 -2.39 -0.02 2.68 16 24 C -0.26 -14.35 8.54 22.86 0.20 -14.16 16 25 H 0.28 13.97 8.30 -92.70 -0.77 13.20 16 26 H 0.09 4.52 8.06 -2.91 -0.02 4.50 16 27 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 28 H 0.11 4.42 6.22 -2.91 -0.02 4.40 16 29 H 0.39 14.84 8.56 -92.70 -0.79 14.04 16 30 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.10 5.66 6.16 -2.91 -0.02 5.64 16 Total: -1.00 -62.16 295.35 3.22 -58.94 By element: Atomic # 1 Polarization: 38.20 SS G_CDS: 0.28 Total: 38.48 kcal Atomic # 6 Polarization: -66.36 SS G_CDS: 2.35 Total: -64.01 kcal Atomic # 7 Polarization: -73.76 SS G_CDS: -1.44 Total: -75.20 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.79 kcal Total: -62.16 3.22 -58.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313491050.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.880 kcal (2) G-P(sol) polarization free energy of solvation -62.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds