Wall clock time and date at job start Mon Mar 30 2020 05:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00088 * 2 1 4 4 H 1.48509 * 109.46988 * 239.99551 * 3 2 1 5 5 H 1.48497 * 109.47203 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47292 * 119.99918 * 3 2 1 7 7 C 1.37883 * 119.99627 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99895 * 180.02562 * 7 2 1 9 9 C 1.50692 * 119.99951 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47123 * 174.68276 * 9 7 2 11 11 C 1.46475 * 110.99757 * 307.50195 * 10 9 7 12 12 C 1.50461 * 111.30261 * 291.84803 * 11 10 9 13 13 C 1.38596 * 119.13860 * 158.42149 * 12 11 10 14 14 C 1.38084 * 120.23630 * 179.61513 * 13 12 11 15 15 C 1.38264 * 120.07949 * 359.84328 * 14 13 12 16 16 C 1.38201 * 119.80010 * 0.55385 * 15 14 13 17 17 C 1.38131 * 121.34658 * 338.26237 * 12 11 10 18 18 C 1.50787 * 119.96424 * 0.56640 * 17 12 11 19 19 C 1.52730 * 117.91815 * 202.69960 * 18 17 12 20 20 C 1.52697 * 117.99726 * 133.56719 * 18 17 12 21 21 C 1.47317 * 111.00059 * 183.51057 * 10 9 7 22 22 H 0.97001 * 119.99225 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47306 * 54.68566 * 9 7 2 24 24 H 1.09001 * 109.47801 * 294.68088 * 9 7 2 25 25 H 1.08992 * 109.11196 * 52.32242 * 11 10 9 26 26 H 1.08997 * 109.11059 * 171.38124 * 11 10 9 27 27 H 1.07999 * 119.88547 * 359.64661 * 13 12 11 28 28 H 1.07997 * 119.95930 * 180.10178 * 14 13 12 29 29 H 1.07997 * 120.09917 * 180.33813 * 15 14 13 30 30 H 1.07995 * 119.96118 * 179.70345 * 16 15 14 31 31 H 1.09004 * 117.51228 * 359.49863 * 19 18 17 32 32 H 1.08997 * 117.50831 * 144.57331 * 19 18 17 33 33 H 1.08998 * 117.50424 * 215.30279 * 20 18 17 34 34 H 1.09000 * 117.50695 * 0.37210 * 20 18 17 35 35 H 1.08990 * 109.80782 * 297.56114 * 21 10 9 36 36 H 1.09008 * 109.80162 * 176.68237 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2004 -3.6128 -0.1272 11 6 3.0848 -3.4192 -1.2787 12 6 2.3279 -3.5317 -2.5742 13 6 2.8563 -2.9522 -3.7170 14 6 2.1847 -3.0485 -4.9196 15 6 0.9822 -3.7273 -4.9894 16 6 0.4490 -4.2990 -3.8497 17 6 1.1224 -4.2022 -2.6462 18 6 0.5338 -4.8285 -1.4073 19 6 -0.4667 -5.9682 -1.5885 20 6 -0.9471 -4.5928 -1.1193 21 6 1.4931 -4.9021 -0.2148 22 1 -0.4849 0.8401 -0.0004 23 1 0.5552 -2.5169 -0.8383 24 1 0.6973 -2.5991 0.9341 25 1 3.5407 -2.4312 -1.2163 26 1 3.8696 -4.1752 -1.2570 27 1 3.7969 -2.4239 -3.6668 28 1 2.6013 -2.5967 -5.8077 29 1 0.4593 -3.8075 -5.9310 30 1 -0.4924 -4.8256 -3.9003 31 1 -0.7113 -6.2662 -2.6081 32 1 -0.4509 -6.7734 -0.8541 33 1 -1.2475 -4.4934 -0.0763 34 1 -1.5079 -3.9860 -1.8303 35 1 0.9301 -5.0775 0.7018 36 1 2.2114 -5.7077 -0.3678 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336083395.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:59 Heat of formation + Delta-G solvation = 57.455526 kcal Electronic energy + Delta-G solvation = -17867.513013 eV Core-core repulsion = 15317.061992 eV Total energy + Delta-G solvation = -2550.451020 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.18532 -36.98058 -35.63249 -32.54526 -30.62368 -30.05092 -27.77542 -26.45282 -23.90814 -22.63312 -22.18879 -21.51748 -20.35343 -18.25301 -16.69953 -15.96687 -15.29229 -15.08891 -14.39569 -14.23726 -13.80626 -13.61698 -13.24425 -13.02472 -12.58898 -11.98351 -11.83011 -11.63917 -11.29228 -11.14242 -10.91366 -10.86608 -10.73392 -10.66926 -10.41456 -10.02986 -9.90076 -9.61254 -9.06831 -8.41108 -8.25542 -7.89323 -7.21567 -5.99286 -3.99952 1.80551 1.86333 3.34005 3.38237 3.40513 4.00357 4.43223 4.48068 4.94621 5.04228 5.14443 5.23293 5.35645 5.38404 5.40092 5.46004 5.58433 5.87279 5.91719 5.95960 6.11553 6.19488 6.23232 6.28615 6.33152 6.46237 6.49585 6.51006 6.67342 6.92345 6.95210 7.20718 7.36652 7.48279 7.59556 7.77954 8.08298 8.23054 8.58085 9.06662 9.63197 11.11675 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.020948 B = 0.009480 C = 0.008059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.298397 B = 2952.952519 C = 3473.526573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.513 4.513 8 H 0.061 0.939 9 C 0.188 3.812 10 N -0.529 5.529 11 C 0.095 3.905 12 C -0.079 4.079 13 C -0.114 4.114 14 C -0.128 4.128 15 C -0.132 4.132 16 C -0.122 4.122 17 C -0.034 4.034 18 C -0.114 4.114 19 C -0.176 4.176 20 C -0.149 4.149 21 C 0.091 3.909 22 H 0.260 0.740 23 H 0.015 0.985 24 H 0.023 0.977 25 H 0.102 0.898 26 H 0.065 0.935 27 H 0.119 0.881 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.427 -9.661 -6.655 11.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.551 4.551 8 H 0.079 0.921 9 C 0.063 3.937 10 N -0.249 5.249 11 C -0.034 4.034 12 C -0.081 4.081 13 C -0.132 4.132 14 C -0.146 4.146 15 C -0.150 4.150 16 C -0.140 4.140 17 C -0.034 4.034 18 C -0.116 4.116 19 C -0.214 4.214 20 C -0.186 4.186 21 C -0.038 4.038 22 H 0.070 0.930 23 H 0.033 0.967 24 H 0.041 0.959 25 H 0.120 0.880 26 H 0.083 0.917 27 H 0.137 0.863 28 H 0.132 0.868 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.092 0.908 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.574 -9.521 -6.176 11.458 hybrid contribution -0.289 1.137 -0.887 1.471 sum 1.285 -8.385 -7.063 11.038 Atomic orbital electron populations 1.69953 1.05973 1.26657 1.50775 1.24935 0.94806 0.99059 0.95424 0.86653 0.79565 0.83168 0.78602 1.20310 1.21377 1.20176 1.21157 0.93192 0.90315 1.50470 0.92054 1.19788 0.90596 0.86636 0.96671 1.62567 1.22500 1.02678 1.37178 1.21030 0.94748 1.02946 0.84666 1.20560 0.95148 0.95358 0.96998 1.21014 1.00196 0.99676 0.92337 1.20968 0.95912 1.00103 0.97613 1.20922 0.96566 0.99700 0.97820 1.20837 0.99600 1.01007 0.92507 1.18712 0.94342 0.97688 0.92650 1.20845 0.92274 1.01823 0.96609 1.23037 1.04249 0.92051 1.02057 1.22981 0.95364 0.97810 1.02451 1.21874 0.94257 0.93645 0.94064 0.93003 0.96722 0.95879 0.88045 0.91690 0.86332 0.86796 0.86827 0.86806 0.89154 0.88802 0.88430 0.88957 0.90837 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -14.33 8.24 -34.44 -0.28 -14.61 16 8 H 0.06 1.68 6.39 -52.49 -0.34 1.34 16 9 C 0.19 4.87 4.24 -4.98 -0.02 4.85 16 10 N -0.53 -11.50 5.06 -237.53 -1.20 -12.70 16 11 C 0.09 1.90 5.28 -5.32 -0.03 1.87 16 12 C -0.08 -1.55 5.31 -104.64 -0.56 -2.10 16 13 C -0.11 -2.02 9.67 -39.51 -0.38 -2.40 16 14 C -0.13 -2.06 10.04 -39.63 -0.40 -2.45 16 15 C -0.13 -2.09 10.06 -39.59 -0.40 -2.48 16 16 C -0.12 -2.07 8.94 -39.59 -0.35 -2.42 16 17 C -0.03 -0.64 4.92 -104.62 -0.51 -1.15 16 18 C -0.11 -2.02 1.32 -155.79 -0.21 -2.23 16 19 C -0.18 -2.52 9.56 -26.84 -0.26 -2.78 16 20 C -0.15 -2.55 8.73 -26.85 -0.23 -2.78 16 21 C 0.09 1.65 5.76 -3.48 -0.02 1.63 16 22 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 23 H 0.01 0.41 5.44 -51.93 -0.28 0.13 16 24 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.10 2.19 5.80 -51.93 -0.30 1.89 16 26 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 28 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 29 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 30 H 0.11 1.71 6.50 -52.49 -0.34 1.37 16 31 H 0.09 1.19 6.70 -51.93 -0.35 0.84 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.10 1.67 8.13 -51.93 -0.42 1.25 16 34 H 0.09 1.64 8.03 -51.93 -0.42 1.23 16 35 H 0.07 1.29 8.03 -51.93 -0.42 0.88 16 36 H 0.07 1.10 8.12 -51.92 -0.42 0.68 16 LS Contribution 286.78 15.07 4.32 4.32 Total: -1.00 -30.29 286.78 -9.87 -40.17 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -4.96 Total: 2.90 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -3.75 Total: -25.47 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: -0.47 Total: -38.66 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.29 -9.87 -40.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336083395.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.621 kcal (2) G-P(sol) polarization free energy of solvation -30.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds