Wall clock time and date at job start Mon Mar 30 2020 05:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99689 * 2 1 4 4 H 1.48493 * 109.47068 * 239.99929 * 3 2 1 5 5 H 1.48501 * 109.47163 * 0.02562 * 3 2 1 6 6 H 1.48512 * 109.46617 * 120.00348 * 3 2 1 7 7 C 1.37874 * 120.00512 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00737 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99426 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46740 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46870 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00519 * 0.02562 * 11 10 9 13 13 N 1.34785 * 119.99843 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99514 * 180.02562 * 13 11 10 15 15 C 1.53008 * 109.46580 * 179.97438 * 14 13 11 16 16 C 1.52994 * 109.46835 * 179.97438 * 15 14 13 17 17 F 1.39901 * 112.90952 * 311.25060 * 16 15 14 18 18 C 1.53784 * 113.61233 * 179.97438 * 16 15 14 19 19 C 1.53787 * 87.07923 * 220.01769 * 18 16 15 20 20 C 1.53779 * 113.61529 * 82.50384 * 16 15 14 21 21 H 0.96998 * 120.00152 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47433 * 59.99809 * 9 7 2 23 23 H 1.09000 * 109.46906 * 299.99777 * 9 7 2 24 24 H 1.08997 * 109.47186 * 59.99814 * 10 9 7 25 25 H 1.09000 * 109.47366 * 299.99651 * 10 9 7 26 26 H 0.96997 * 119.99851 * 0.02562 * 13 11 10 27 27 H 1.09000 * 109.47054 * 60.00432 * 14 13 11 28 28 H 1.08997 * 109.47397 * 299.99505 * 14 13 11 29 29 H 1.08997 * 109.47160 * 59.99921 * 15 14 13 30 30 H 1.08997 * 109.46852 * 299.99839 * 15 14 13 31 31 H 1.09004 * 113.61451 * 105.47254 * 18 16 15 32 32 H 1.08994 * 113.61477 * 334.56556 * 18 16 15 33 33 H 1.08997 * 113.61028 * 139.98291 * 19 18 16 34 34 H 1.09000 * 113.61529 * 270.88430 * 19 18 16 35 35 H 1.09006 * 113.61307 * 25.43275 * 20 16 15 36 36 H 1.08999 * 113.69146 * 254.53761 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0027 11 6 1.4919 -4.9671 -0.0033 12 8 0.2791 -4.9672 -0.0033 13 7 2.1658 -6.1343 -0.0047 14 6 1.4333 -7.4030 -0.0058 15 6 2.4276 -8.5660 -0.0080 16 6 1.6626 -9.8909 -0.0085 17 9 0.6555 -9.9387 0.9614 18 6 2.5750 -11.1289 -0.0113 19 6 1.5801 -11.7625 -0.9982 20 6 1.1939 -10.3312 -1.4054 21 1 -0.4850 0.8400 0.0004 22 1 0.6247 -2.5563 -0.8919 23 1 0.6241 -2.5574 0.8880 24 1 2.8720 -3.6050 0.8873 25 1 2.8720 -3.6035 -0.8927 26 1 3.1358 -6.1342 -0.0051 27 1 0.8064 -7.4598 -0.8957 28 1 0.8070 -7.4618 0.8843 29 1 3.0549 -8.5093 0.8815 30 1 3.0536 -8.5070 -0.8984 31 1 2.6209 -11.6397 0.9505 32 1 3.5594 -10.9449 -0.4414 33 1 2.0586 -12.3293 -1.7969 34 1 0.7732 -12.3114 -0.5129 35 1 1.8011 -9.9291 -2.2165 36 1 0.1248 -10.1980 -1.5708 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360631357.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:40 Heat of formation + Delta-G solvation = -90.169827 kcal Electronic energy + Delta-G solvation = -17003.462890 eV Core-core repulsion = 14015.841129 eV Total energy + Delta-G solvation = -2987.621761 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 243.138 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -47.91877 -39.17036 -38.36830 -34.96151 -33.41749 -31.43446 -30.45390 -26.41513 -26.07867 -24.65412 -22.18982 -21.34357 -19.98237 -19.51786 -16.91450 -16.42726 -16.21302 -15.82531 -15.45360 -15.22535 -14.93447 -14.41439 -14.19004 -14.14081 -13.23266 -13.03979 -12.88893 -12.35496 -12.14872 -12.09458 -11.64096 -11.48078 -11.31708 -11.14375 -10.89157 -10.62649 -10.49346 -10.46577 -9.92579 -9.63928 -9.15761 -8.98094 -8.75287 -8.29665 -5.93783 -3.98395 3.30065 3.35757 3.39893 3.41553 3.48639 3.88072 3.90876 4.23435 4.33744 4.39335 4.49987 4.84228 4.96401 5.21052 5.23101 5.29265 5.40831 5.44514 5.47418 5.54099 5.59743 5.66272 5.86585 6.01889 6.09656 6.25724 6.27132 6.74143 6.92324 7.76392 7.89270 7.91809 8.09971 8.41065 8.82195 9.10284 9.64940 11.17165 Molecular weight = 243.14amu Principal moments of inertia in cm(-1) A = 0.072825 B = 0.003354 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.393572 B = 8347.094913 C = 8499.126415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.130 4.130 11 C 0.508 3.492 12 O -0.534 6.534 13 N -0.746 5.746 14 C 0.119 3.881 15 C -0.140 4.140 16 C 0.096 3.904 17 F -0.188 7.188 18 C -0.155 4.155 19 C -0.142 4.142 20 C -0.157 4.157 21 H 0.261 0.739 22 H 0.023 0.977 23 H 0.023 0.977 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.396 0.604 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.017 -22.898 -1.850 24.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.566 4.566 8 H 0.073 0.927 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.296 3.704 12 O -0.409 6.409 13 N -0.400 5.400 14 C -0.005 4.005 15 C -0.178 4.178 16 C 0.077 3.923 17 F -0.168 7.168 18 C -0.192 4.192 19 C -0.179 4.179 20 C -0.195 4.195 21 H 0.071 0.929 22 H 0.042 0.958 23 H 0.042 0.958 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.230 0.770 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.118 0.882 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.910 -22.764 -1.822 23.859 hybrid contribution 0.848 0.859 0.110 1.212 sum 7.758 -21.905 -1.712 23.301 Atomic orbital electron populations 1.69988 1.06060 1.26691 1.50111 1.25030 0.94829 0.99220 0.95323 0.86648 0.79536 0.83183 0.78522 1.20259 1.21285 1.20258 1.21193 0.92886 0.91050 1.51496 0.92657 1.18898 0.93196 0.89366 0.98638 1.21862 1.00704 0.91954 1.02441 1.21580 0.88679 0.85655 0.74445 1.90674 1.14515 1.87641 1.48060 1.46189 1.09944 1.05601 1.78261 1.21148 0.94374 0.82252 1.02750 1.22216 0.98627 0.92742 1.04208 1.21754 0.87165 0.95491 0.87846 1.92860 1.61988 1.97382 1.64586 1.23558 0.98731 0.95706 1.01255 1.22850 0.99295 0.96486 0.99286 1.23592 1.03355 0.96526 0.96034 0.92888 0.95832 0.95810 0.90261 0.90262 0.77009 0.91692 0.91326 0.90076 0.89287 0.90205 0.88277 0.90600 0.89676 0.88217 0.89989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.78 13.29 55.43 0.74 -27.04 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.53 -15.17 9.11 -34.44 -0.31 -15.48 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 10 C -0.13 -2.67 5.64 -27.88 -0.16 -2.83 16 11 C 0.51 10.08 7.83 -10.98 -0.09 10.00 16 12 O -0.53 -13.12 15.98 5.56 0.09 -13.03 16 13 N -0.75 -10.64 5.56 -60.29 -0.33 -10.98 16 14 C 0.12 1.55 5.47 -4.03 -0.02 1.53 16 15 C -0.14 -1.22 5.05 -26.73 -0.14 -1.35 16 16 C 0.10 0.86 1.62 -89.81 -0.15 0.72 16 17 F -0.19 -2.28 16.54 2.25 0.04 -2.24 16 18 C -0.15 -1.03 7.54 -25.91 -0.20 -1.22 16 19 C -0.14 -0.93 8.06 -25.94 -0.21 -1.14 16 20 C -0.16 -1.21 7.52 -25.94 -0.20 -1.40 16 21 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 22 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 23 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 24 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 25 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 26 H 0.40 4.25 8.47 -40.82 -0.35 3.91 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 1.04 7.74 -51.93 -0.40 0.64 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 0.60 7.94 -51.93 -0.41 0.19 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.10 0.49 8.10 -51.93 -0.42 0.07 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.10 0.63 7.96 -51.93 -0.41 0.22 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 307.38 15.07 4.63 4.63 Total: -1.00 -34.85 307.38 -7.30 -42.15 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -5.76 Total: -1.60 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -1.68 Total: -8.70 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.40 Total: -38.02 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.09 Total: -13.03 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.85 -7.30 -42.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360631357.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.020 kcal (2) G-P(sol) polarization free energy of solvation -34.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds