Wall clock time and date at job start Mon Mar 30 2020 05:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99689 * 2 1 4 4 H 1.48493 * 109.47068 * 239.99929 * 3 2 1 5 5 H 1.48501 * 109.47163 * 0.02562 * 3 2 1 6 6 H 1.48512 * 109.46617 * 120.00348 * 3 2 1 7 7 C 1.37874 * 120.00512 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00737 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99426 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46740 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46870 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00519 * 0.02562 * 11 10 9 13 13 N 1.34785 * 119.99843 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99514 * 180.02562 * 13 11 10 15 15 C 1.53008 * 109.46580 * 179.97438 * 14 13 11 16 16 C 1.52994 * 109.46835 * 179.97438 * 15 14 13 17 17 F 1.39901 * 112.90952 * 311.25060 * 16 15 14 18 18 C 1.53784 * 113.61233 * 179.97438 * 16 15 14 19 19 C 1.53787 * 87.07923 * 220.01769 * 18 16 15 20 20 C 1.53779 * 113.61529 * 82.50384 * 16 15 14 21 21 H 0.96998 * 120.00152 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47433 * 59.99809 * 9 7 2 23 23 H 1.09000 * 109.46906 * 299.99777 * 9 7 2 24 24 H 1.08997 * 109.47186 * 59.99814 * 10 9 7 25 25 H 1.09000 * 109.47366 * 299.99651 * 10 9 7 26 26 H 0.96997 * 119.99851 * 0.02562 * 13 11 10 27 27 H 1.09000 * 109.47054 * 60.00432 * 14 13 11 28 28 H 1.08997 * 109.47397 * 299.99505 * 14 13 11 29 29 H 1.08997 * 109.47160 * 59.99921 * 15 14 13 30 30 H 1.08997 * 109.46852 * 299.99839 * 15 14 13 31 31 H 1.09004 * 113.61451 * 105.47254 * 18 16 15 32 32 H 1.08994 * 113.61477 * 334.56556 * 18 16 15 33 33 H 1.08997 * 113.61028 * 139.98291 * 19 18 16 34 34 H 1.09000 * 113.61529 * 270.88430 * 19 18 16 35 35 H 1.09006 * 113.61307 * 25.43275 * 20 16 15 36 36 H 1.08999 * 113.69146 * 254.53761 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0027 11 6 1.4919 -4.9671 -0.0033 12 8 0.2791 -4.9672 -0.0033 13 7 2.1658 -6.1343 -0.0047 14 6 1.4333 -7.4030 -0.0058 15 6 2.4276 -8.5660 -0.0080 16 6 1.6626 -9.8909 -0.0085 17 9 0.6555 -9.9387 0.9614 18 6 2.5750 -11.1289 -0.0113 19 6 1.5801 -11.7625 -0.9982 20 6 1.1939 -10.3312 -1.4054 21 1 -0.4850 0.8400 0.0004 22 1 0.6247 -2.5563 -0.8919 23 1 0.6241 -2.5574 0.8880 24 1 2.8720 -3.6050 0.8873 25 1 2.8720 -3.6035 -0.8927 26 1 3.1358 -6.1342 -0.0051 27 1 0.8064 -7.4598 -0.8957 28 1 0.8070 -7.4618 0.8843 29 1 3.0549 -8.5093 0.8815 30 1 3.0536 -8.5070 -0.8984 31 1 2.6209 -11.6397 0.9505 32 1 3.5594 -10.9449 -0.4414 33 1 2.0586 -12.3293 -1.7969 34 1 0.7732 -12.3114 -0.5129 35 1 1.8011 -9.9291 -2.2165 36 1 0.1248 -10.1980 -1.5708 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360631357.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:39 Heat of formation + Delta-G solvation = -113.981050 kcal Electronic energy + Delta-G solvation = -17004.495422 eV Core-core repulsion = 14015.841129 eV Total energy + Delta-G solvation = -2988.654293 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 243.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.72968 -40.69245 -39.05219 -36.26431 -35.53412 -33.17166 -31.80232 -27.97239 -26.85039 -25.88246 -23.59092 -22.66519 -21.24090 -20.47482 -18.82467 -17.55540 -17.29298 -17.00037 -16.65329 -16.55982 -16.29949 -15.90842 -15.39203 -14.94184 -14.71339 -14.17529 -14.13802 -13.87202 -13.43421 -13.24175 -12.96583 -12.77896 -12.55247 -12.50689 -12.16260 -11.90489 -11.85166 -11.63850 -11.33023 -11.24246 -11.09570 -10.67111 -10.56089 -10.09986 -8.17449 -6.32079 1.42469 1.47401 1.55130 1.70549 2.21346 2.45111 3.15306 3.25380 3.31010 3.56748 3.70330 3.80799 4.04540 4.12460 4.16533 4.49787 4.51988 4.56725 4.71545 4.75828 4.77274 4.86082 4.97330 5.02172 5.04428 5.11877 5.19250 5.42992 5.49592 5.52180 5.63198 5.85757 6.17592 6.62158 6.86607 7.35282 7.38586 8.95205 Molecular weight = 243.14amu Principal moments of inertia in cm(-1) A = 0.072825 B = 0.003354 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.393572 B = 8347.094913 C = 8499.126415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.009 4.009 3 Si 0.976 3.024 4 H -0.261 1.261 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.078 0.922 9 C 0.040 3.960 10 C -0.118 4.118 11 C 0.507 3.493 12 O -0.593 6.593 13 N -0.716 5.716 14 C 0.118 3.882 15 C -0.127 4.127 16 C 0.075 3.925 17 F -0.213 7.213 18 C -0.142 4.142 19 C -0.140 4.140 20 C -0.160 4.160 21 H 0.263 0.737 22 H -0.019 1.019 23 H -0.020 1.020 24 H 0.106 0.894 25 H 0.108 0.892 26 H 0.419 0.581 27 H 0.053 0.947 28 H 0.041 0.959 29 H 0.094 0.906 30 H 0.120 0.880 31 H 0.078 0.922 32 H 0.125 0.875 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.118 0.882 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.648 -23.528 -2.396 26.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.799 3.201 4 H -0.185 1.185 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.096 0.904 9 C 0.003 3.997 10 C -0.158 4.158 11 C 0.296 3.704 12 O -0.474 6.474 13 N -0.370 5.370 14 C -0.006 4.006 15 C -0.165 4.165 16 C 0.056 3.944 17 F -0.194 7.194 18 C -0.180 4.180 19 C -0.177 4.177 20 C -0.198 4.198 21 H 0.071 0.929 22 H 0.000 1.000 23 H -0.002 1.002 24 H 0.124 0.876 25 H 0.127 0.873 26 H 0.257 0.743 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.113 0.887 30 H 0.138 0.862 31 H 0.096 0.904 32 H 0.143 0.857 33 H 0.113 0.887 34 H 0.093 0.907 35 H 0.137 0.863 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.619 -23.447 -2.367 25.849 hybrid contribution -0.321 0.987 0.277 1.074 sum 10.299 -22.461 -2.090 24.797 Atomic orbital electron populations 1.70180 1.08408 1.27898 1.51449 1.26180 0.95731 1.04091 0.94614 0.85345 0.78013 0.77163 0.79536 1.18532 1.21422 1.18647 1.21703 0.94073 0.91549 1.50867 0.90381 1.18701 0.93787 0.92654 0.94593 1.21638 0.99247 0.89805 1.05072 1.21449 0.87823 0.87014 0.74141 1.90661 1.17017 1.88487 1.51191 1.45849 1.11057 1.04482 1.75623 1.21215 0.95412 0.83030 1.00956 1.22204 0.97604 0.90266 1.06387 1.22177 0.87501 0.96713 0.87984 1.92811 1.63326 1.97534 1.65710 1.23568 0.99327 0.93707 1.01354 1.22846 0.99175 0.95906 0.99780 1.23678 1.02695 0.97539 0.95879 0.92859 1.00025 1.00189 0.87598 0.87349 0.74281 0.92878 0.94022 0.88726 0.86185 0.90369 0.85679 0.88680 0.90711 0.86347 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.49 13.29 21.45 0.28 -60.21 16 2 C -0.01 -0.52 5.46 84.65 0.46 -0.06 16 3 Si 0.98 44.50 29.54 68.60 2.03 46.53 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.54 -31.24 9.11 25.60 0.23 -31.01 16 8 H 0.08 4.03 7.74 -2.91 -0.02 4.01 16 9 C 0.04 2.29 4.26 29.85 0.13 2.41 16 10 C -0.12 -4.75 5.64 29.85 0.17 -4.59 16 11 C 0.51 20.16 7.83 87.66 0.69 20.85 16 12 O -0.59 -30.59 15.98 -3.03 -0.05 -30.64 16 13 N -0.72 -19.22 5.56 -463.03 -2.57 -21.80 16 14 C 0.12 3.00 5.47 86.38 0.47 3.47 16 15 C -0.13 -1.87 5.05 30.60 0.15 -1.71 16 16 C 0.07 1.22 1.62 -10.27 -0.02 1.21 16 17 F -0.21 -5.25 16.54 44.97 0.74 -4.50 16 18 C -0.14 -1.48 7.54 31.12 0.23 -1.24 16 19 C -0.14 -1.54 8.06 31.11 0.25 -1.29 16 20 C -0.16 -2.22 7.52 31.11 0.23 -1.98 16 21 H 0.26 15.86 8.31 -92.71 -0.77 15.08 16 22 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 23 H -0.02 -1.31 8.10 -2.39 -0.02 -1.33 16 24 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 25 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 26 H 0.42 7.48 8.47 -92.71 -0.79 6.69 16 27 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.04 1.30 7.74 -2.39 -0.02 1.28 16 29 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.12 1.07 7.94 -2.39 -0.02 1.05 16 31 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.12 0.67 8.10 -2.39 -0.02 0.65 16 33 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.12 1.17 7.96 -2.38 -0.02 1.15 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -80.66 307.38 3.71 -76.95 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 0.27 Total: 7.62 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: 3.01 Total: -13.95 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -2.29 Total: -82.00 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -0.05 Total: -30.64 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.74 Total: -4.50 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -80.66 3.71 -76.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360631357.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.031 kcal (2) G-P(sol) polarization free energy of solvation -80.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds