Wall clock time and date at job start Mon Mar 30 2020 05:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30901 * 1 3 3 Si 1.86801 * 119.99878 * 2 1 4 4 H 1.48502 * 109.47005 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47331 * 300.00311 * 3 2 1 6 6 H 1.48509 * 109.46988 * 60.00461 * 3 2 1 7 7 C 1.39861 * 120.00222 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00136 * 197.97584 * 7 2 1 9 9 C 1.41141 * 119.99504 * 17.97288 * 7 2 1 10 10 C 1.40885 * 120.15904 * 24.60700 * 9 7 2 11 11 C 1.36341 * 119.83660 * 179.97438 * 10 9 7 12 12 C 1.39560 * 120.16276 * 359.97438 * 11 10 9 13 13 N 1.38854 * 119.84473 * 180.02562 * 12 11 10 14 14 C 1.46501 * 120.00613 * 179.97438 * 13 12 11 15 15 H 1.09002 * 110.42899 * 327.54009 * 14 13 12 16 16 C 1.54476 * 111.07693 * 89.44338 * 14 13 12 17 17 C 1.54885 * 102.94083 * 156.20983 * 16 14 13 18 18 C 1.54268 * 104.31481 * 322.66203 * 17 16 14 19 19 H 1.09001 * 117.41540 * 243.57182 * 18 17 16 20 20 C 1.52999 * 118.19554 * 87.72794 * 18 17 16 21 21 C 1.53002 * 60.38029 * 266.38621 * 20 18 17 22 22 H 1.08999 * 119.29739 * 248.69968 * 21 20 18 23 23 C 1.39564 * 120.31595 * 0.27628 * 12 11 10 24 24 C 1.36344 * 120.15962 * 359.48349 * 23 12 11 25 25 H 0.97007 * 120.00103 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.08218 * 359.97438 * 10 9 7 27 27 H 1.08001 * 119.91699 * 180.02562 * 11 10 9 28 28 H 0.97005 * 120.00012 * 359.97438 * 13 12 11 29 29 H 1.08998 * 110.19413 * 38.04324 * 16 14 13 30 30 H 1.09004 * 111.12678 * 274.80083 * 16 14 13 31 31 H 1.09009 * 110.48350 * 203.91953 * 17 16 14 32 32 H 1.09002 * 110.49194 * 81.41187 * 17 16 14 33 33 H 1.08999 * 117.46262 * 13.98107 * 20 18 17 34 34 H 1.09003 * 117.46085 * 158.78941 * 20 18 17 35 35 H 1.07997 * 119.92206 * 179.72422 * 23 12 11 36 36 H 1.08000 * 120.08299 * 180.22933 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.7030 1.3464 0.0006 5 1 1.8842 2.3965 -1.2124 6 1 1.8843 2.3964 1.2126 7 6 2.0084 -1.2112 -0.0005 8 1 3.0487 -1.2341 0.2881 9 6 1.3543 -2.4035 -0.3783 10 6 0.2261 -2.3555 -1.2207 11 6 -0.4004 -3.5114 -1.5819 12 6 0.0736 -4.7399 -1.1196 13 7 -0.5692 -5.9130 -1.4920 14 6 -0.0743 -7.2047 -1.0093 15 1 1.0090 -7.1773 -0.8921 16 6 -0.7333 -7.5848 0.3351 17 6 -0.6019 -9.1278 0.3618 18 6 -0.8288 -9.5553 -1.1030 19 1 -1.6989 -10.1765 -1.3156 20 6 0.3802 -9.5959 -2.0398 21 6 -0.4844 -8.3353 -1.9753 22 1 -1.0956 -8.0631 -2.8357 23 6 1.1875 -4.7947 -0.2806 24 6 1.8269 -3.6473 0.0848 25 1 -0.4850 0.8401 0.0004 26 1 -0.1416 -1.4056 -1.5795 27 1 -1.2652 -3.4762 -2.2280 28 1 -1.3461 -5.8774 -2.0719 29 1 -1.7816 -7.2862 0.3380 30 1 -0.2006 -7.1373 1.1742 31 1 -1.3629 -9.5644 1.0088 32 1 0.3939 -9.4203 0.6947 33 1 1.3700 -9.5504 -1.5853 34 1 0.3024 -10.2136 -2.9345 35 1 1.5462 -5.7485 0.0770 36 1 2.6910 -3.6914 0.7312 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378949180.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:22 Heat of formation + Delta-G solvation = 43.737409 kcal Electronic energy + Delta-G solvation = -16697.095076 eV Core-core repulsion = 14146.049194 eV Total energy + Delta-G solvation = -2551.045883 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.63042 -37.62097 -34.62373 -32.76604 -31.04495 -29.54038 -28.71308 -26.54569 -24.10497 -22.57569 -21.37881 -20.37666 -20.02230 -19.35222 -17.16434 -16.33178 -15.99291 -15.09212 -14.52514 -14.22229 -13.70062 -13.32548 -12.85975 -12.78388 -12.53001 -12.13625 -11.92239 -11.79410 -11.32311 -11.23372 -11.05301 -10.96016 -10.75294 -10.59282 -10.41030 -10.21967 -9.66438 -9.56550 -9.25898 -9.19786 -8.50680 -7.46194 -6.62234 -6.35166 -4.00715 2.92245 3.12774 3.17004 3.22440 3.37143 3.62311 4.07429 4.21169 4.52569 4.74836 4.83611 5.05941 5.19012 5.35320 5.52878 5.56525 5.63230 5.74415 5.77516 5.87258 5.96957 6.17166 6.18585 6.29084 6.34453 6.34906 6.47862 6.90813 7.09368 7.23344 7.34470 7.63990 7.69692 7.83331 8.17935 8.37148 8.53729 8.72050 8.83925 9.08725 9.18256 10.39640 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.060026 B = 0.004477 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.349564 B = 6252.316355 C = 6344.276116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.075 3.925 3 Si 0.902 3.098 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.277 1.277 7 C -0.467 4.467 8 H 0.073 0.927 9 C 0.074 3.926 10 C -0.123 4.123 11 C -0.164 4.164 12 C 0.094 3.906 13 N -0.751 5.751 14 C 0.189 3.811 15 H 0.077 0.923 16 C -0.138 4.138 17 C -0.095 4.095 18 C -0.169 4.169 19 H 0.106 0.894 20 C -0.151 4.151 21 C -0.169 4.169 22 H 0.108 0.892 23 C -0.160 4.160 24 C -0.188 4.188 25 H 0.275 0.725 26 H 0.119 0.881 27 H 0.086 0.914 28 H 0.384 0.616 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.964 -13.091 -2.150 13.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.498 4.498 8 H 0.091 0.909 9 C 0.071 3.929 10 C -0.143 4.143 11 C -0.186 4.186 12 C -0.003 4.003 13 N -0.385 5.385 14 C 0.082 3.918 15 H 0.094 0.906 16 C -0.178 4.178 17 C -0.133 4.133 18 C -0.187 4.187 19 H 0.124 0.876 20 C -0.188 4.188 21 C -0.188 4.188 22 H 0.127 0.873 23 C -0.182 4.182 24 C -0.208 4.208 25 H 0.086 0.914 26 H 0.136 0.864 27 H 0.104 0.896 28 H 0.217 0.783 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.106 0.894 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.036 -12.996 -2.033 13.311 hybrid contribution -0.098 0.786 -0.194 0.815 sum -2.134 -12.210 -2.227 12.594 Atomic orbital electron populations 1.69867 1.07367 1.28472 1.37862 1.25789 0.94637 1.00869 0.92729 0.86378 0.81010 0.81640 0.78300 1.18635 1.19976 1.20296 1.19396 0.97941 0.91389 1.41095 0.90931 1.17498 0.92447 0.92005 0.90956 1.20918 0.98145 0.96360 0.98858 1.20037 1.01557 0.91897 1.05069 1.17350 0.95948 0.85185 1.01809 1.43821 1.34690 1.02121 1.57848 1.20859 0.98141 0.82297 0.90525 0.90556 1.23122 1.01798 0.94019 0.98812 1.21914 1.01568 0.95911 0.93915 1.23256 1.00021 1.02441 0.93017 0.87580 1.23018 0.95569 0.99418 1.00813 1.23463 1.04708 0.89731 1.00855 0.87348 1.19887 0.98004 0.96994 1.03360 1.20561 1.02680 0.92695 1.04908 0.91411 0.86363 0.89578 0.78312 0.91285 0.91076 0.91433 0.91547 0.88933 0.88605 0.89435 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.68 10.96 55.54 0.61 -21.07 16 2 C 0.07 1.95 5.13 -17.34 -0.09 1.86 16 3 Si 0.90 19.40 29.60 -169.99 -5.03 14.37 16 4 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.47 -12.84 9.03 -37.87 -0.34 -13.18 16 8 H 0.07 1.93 7.91 -52.49 -0.41 1.52 16 9 C 0.07 2.02 5.57 -106.79 -0.60 1.43 16 10 C -0.12 -3.26 8.64 -39.26 -0.34 -3.60 16 11 C -0.16 -3.88 9.82 -39.77 -0.39 -4.27 16 12 C 0.09 2.07 6.67 -83.69 -0.56 1.51 16 13 N -0.75 -13.33 5.33 -50.65 -0.27 -13.60 16 14 C 0.19 2.86 2.66 -66.50 -0.18 2.68 16 15 H 0.08 1.25 6.38 -51.93 -0.33 0.92 16 16 C -0.14 -1.93 6.59 -24.96 -0.16 -2.09 16 17 C -0.10 -1.06 6.63 -25.07 -0.17 -1.23 16 18 C -0.17 -1.83 6.94 -89.50 -0.62 -2.45 16 19 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 20 C -0.15 -1.60 10.09 -26.73 -0.27 -1.86 16 21 C -0.17 -2.10 6.52 -89.50 -0.58 -2.68 16 22 H 0.11 1.31 8.05 -51.93 -0.42 0.89 16 23 C -0.16 -3.66 9.14 -39.77 -0.36 -4.02 16 24 C -0.19 -4.73 9.74 -39.26 -0.38 -5.12 16 25 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 26 H 0.12 3.25 6.16 -52.49 -0.32 2.93 16 27 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 28 H 0.38 6.22 8.58 -40.82 -0.35 5.87 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 1.79 6.17 -52.49 -0.32 1.46 16 36 H 0.09 2.15 8.06 -52.49 -0.42 1.72 16 LS Contribution 295.02 15.07 4.45 4.45 Total: -1.00 -28.08 295.02 -10.39 -38.47 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -5.10 Total: 10.43 kcal Atomic # 6 Polarization: -27.99 SS G_CDS: -5.04 Total: -33.03 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.34 Total: -34.68 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.08 -10.39 -38.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378949180.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.204 kcal (2) G-P(sol) polarization free energy of solvation -28.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds