Wall clock time and date at job start Mon Mar 30 2020 05:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30901 * 1 3 3 Si 1.86801 * 119.99878 * 2 1 4 4 H 1.48502 * 109.47005 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47331 * 300.00311 * 3 2 1 6 6 H 1.48509 * 109.46988 * 60.00461 * 3 2 1 7 7 C 1.39861 * 120.00222 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00136 * 197.97584 * 7 2 1 9 9 C 1.41141 * 119.99504 * 17.97288 * 7 2 1 10 10 C 1.40885 * 120.15904 * 24.60700 * 9 7 2 11 11 C 1.36341 * 119.83660 * 179.97438 * 10 9 7 12 12 C 1.39560 * 120.16276 * 359.97438 * 11 10 9 13 13 N 1.38854 * 119.84473 * 180.02562 * 12 11 10 14 14 C 1.46501 * 120.00613 * 179.97438 * 13 12 11 15 15 H 1.09002 * 110.42899 * 327.54009 * 14 13 12 16 16 C 1.54476 * 111.07693 * 89.44338 * 14 13 12 17 17 C 1.54885 * 102.94083 * 156.20983 * 16 14 13 18 18 C 1.54268 * 104.31481 * 322.66203 * 17 16 14 19 19 H 1.09001 * 117.41540 * 243.57182 * 18 17 16 20 20 C 1.52999 * 118.19554 * 87.72794 * 18 17 16 21 21 C 1.53002 * 60.38029 * 266.38621 * 20 18 17 22 22 H 1.08999 * 119.29739 * 248.69968 * 21 20 18 23 23 C 1.39564 * 120.31595 * 0.27628 * 12 11 10 24 24 C 1.36344 * 120.15962 * 359.48349 * 23 12 11 25 25 H 0.97007 * 120.00103 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.08218 * 359.97438 * 10 9 7 27 27 H 1.08001 * 119.91699 * 180.02562 * 11 10 9 28 28 H 0.97005 * 120.00012 * 359.97438 * 13 12 11 29 29 H 1.08998 * 110.19413 * 38.04324 * 16 14 13 30 30 H 1.09004 * 111.12678 * 274.80083 * 16 14 13 31 31 H 1.09009 * 110.48350 * 203.91953 * 17 16 14 32 32 H 1.09002 * 110.49194 * 81.41187 * 17 16 14 33 33 H 1.08999 * 117.46262 * 13.98107 * 20 18 17 34 34 H 1.09003 * 117.46085 * 158.78941 * 20 18 17 35 35 H 1.07997 * 119.92206 * 179.72422 * 23 12 11 36 36 H 1.08000 * 120.08299 * 180.22933 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.7030 1.3464 0.0006 5 1 1.8842 2.3965 -1.2124 6 1 1.8843 2.3964 1.2126 7 6 2.0084 -1.2112 -0.0005 8 1 3.0487 -1.2341 0.2881 9 6 1.3543 -2.4035 -0.3783 10 6 0.2261 -2.3555 -1.2207 11 6 -0.4004 -3.5114 -1.5819 12 6 0.0736 -4.7399 -1.1196 13 7 -0.5692 -5.9130 -1.4920 14 6 -0.0743 -7.2047 -1.0093 15 1 1.0090 -7.1773 -0.8921 16 6 -0.7333 -7.5848 0.3351 17 6 -0.6019 -9.1278 0.3618 18 6 -0.8288 -9.5553 -1.1030 19 1 -1.6989 -10.1765 -1.3156 20 6 0.3802 -9.5959 -2.0398 21 6 -0.4844 -8.3353 -1.9753 22 1 -1.0956 -8.0631 -2.8357 23 6 1.1875 -4.7947 -0.2806 24 6 1.8269 -3.6473 0.0848 25 1 -0.4850 0.8401 0.0004 26 1 -0.1416 -1.4056 -1.5795 27 1 -1.2652 -3.4762 -2.2280 28 1 -1.3461 -5.8774 -2.0719 29 1 -1.7816 -7.2862 0.3380 30 1 -0.2006 -7.1373 1.1742 31 1 -1.3629 -9.5644 1.0088 32 1 0.3939 -9.4203 0.6947 33 1 1.3700 -9.5504 -1.5853 34 1 0.3024 -10.2136 -2.9345 35 1 1.5462 -5.7485 0.0770 36 1 2.6910 -3.6914 0.7312 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378949180.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:21 Heat of formation + Delta-G solvation = 29.848831 kcal Electronic energy + Delta-G solvation = -16697.697330 eV Core-core repulsion = 14146.049194 eV Total energy + Delta-G solvation = -2551.648137 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.74841 -39.36694 -36.31787 -34.52299 -32.21469 -31.34037 -30.50085 -27.96909 -25.85694 -23.58892 -23.11391 -22.07086 -21.18758 -20.51678 -19.10786 -17.79716 -17.34385 -16.88137 -15.91718 -15.55430 -15.34519 -14.61716 -14.39711 -14.29064 -13.86615 -13.75473 -13.64121 -13.37215 -12.86497 -12.79465 -12.58349 -12.21842 -12.19894 -12.09174 -11.65283 -11.54826 -11.22394 -11.10743 -10.98193 -10.53149 -10.26985 -9.40805 -8.55414 -8.15486 -6.00765 1.09488 1.18208 1.40427 1.54808 1.58154 2.27799 2.72702 2.82631 2.86039 3.55604 3.82064 3.90973 4.07918 4.21972 4.32941 4.44651 4.49581 4.55328 4.58016 4.64445 4.76584 4.93317 4.99208 5.08151 5.14920 5.22097 5.25987 5.27043 5.33082 5.41302 5.47288 5.74193 5.79516 5.92931 6.18467 6.41092 6.68776 6.89201 7.08486 7.14084 7.31356 8.48474 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.060026 B = 0.004477 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.349564 B = 6252.316355 C = 6344.276116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.032 3.968 3 Si 0.977 3.023 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.506 4.506 8 H 0.067 0.933 9 C 0.035 3.965 10 C -0.141 4.141 11 C -0.175 4.175 12 C 0.115 3.885 13 N -0.743 5.743 14 C 0.182 3.818 15 H 0.063 0.937 16 C -0.138 4.138 17 C -0.091 4.091 18 C -0.157 4.157 19 H 0.125 0.875 20 C -0.141 4.141 21 C -0.186 4.186 22 H 0.113 0.887 23 C -0.167 4.167 24 C -0.197 4.197 25 H 0.282 0.718 26 H 0.100 0.900 27 H 0.107 0.893 28 H 0.394 0.606 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.260 -14.981 -2.565 15.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.179 4.179 3 Si 0.798 3.202 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.193 1.193 7 C -0.537 4.537 8 H 0.085 0.915 9 C 0.032 3.968 10 C -0.162 4.162 11 C -0.198 4.198 12 C 0.015 3.985 13 N -0.376 5.376 14 C 0.076 3.924 15 H 0.081 0.919 16 C -0.178 4.178 17 C -0.129 4.129 18 C -0.175 4.175 19 H 0.143 0.857 20 C -0.178 4.178 21 C -0.204 4.204 22 H 0.131 0.869 23 C -0.189 4.189 24 C -0.218 4.218 25 H 0.093 0.907 26 H 0.118 0.882 27 H 0.125 0.875 28 H 0.228 0.772 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.351 -14.942 -2.455 15.324 hybrid contribution -0.067 1.171 -0.080 1.176 sum -2.418 -13.771 -2.535 14.210 Atomic orbital electron populations 1.69925 1.08779 1.29746 1.38589 1.26610 0.95442 1.04097 0.91792 0.85247 0.79382 0.76821 0.78714 1.18447 1.19080 1.19324 1.19614 0.98015 0.92801 1.43319 0.91467 1.17819 0.93620 0.93002 0.92336 1.20859 0.98828 0.96685 0.99780 1.20235 1.02174 0.91774 1.05570 1.17442 0.95024 0.86234 0.99765 1.43902 1.34449 1.01893 1.57338 1.21043 0.97426 0.81795 0.92143 0.91876 1.23067 1.00912 0.96343 0.97434 1.21899 1.02601 0.93511 0.94850 1.23355 1.00809 1.01149 0.92177 0.85747 1.23144 0.95404 0.97807 1.01475 1.23337 1.06563 0.89397 1.01150 0.86913 1.20115 0.98078 0.97310 1.03378 1.20758 1.03055 0.92947 1.04999 0.90747 0.88171 0.87510 0.77178 0.91905 0.92573 0.89810 0.90926 0.88969 0.86597 0.86999 0.88705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.55 10.96 21.81 0.24 -46.31 16 2 C 0.03 1.73 5.13 85.22 0.44 2.17 16 3 Si 0.98 40.57 29.60 68.60 2.03 42.60 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 6 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 7 C -0.51 -28.95 9.03 23.38 0.21 -28.74 16 8 H 0.07 3.74 7.91 -2.92 -0.02 3.72 16 9 C 0.04 1.99 5.57 -21.27 -0.12 1.88 16 10 C -0.14 -7.77 8.64 22.48 0.19 -7.57 16 11 C -0.18 -8.36 9.82 22.15 0.22 -8.15 16 12 C 0.11 4.99 6.67 38.67 0.26 5.25 16 13 N -0.74 -25.22 5.33 -314.16 -1.67 -26.89 16 14 C 0.18 5.16 2.66 45.92 0.12 5.28 16 15 H 0.06 1.97 6.38 -2.39 -0.02 1.95 16 16 C -0.14 -3.62 6.59 31.74 0.21 -3.41 16 17 C -0.09 -1.76 6.63 31.67 0.21 -1.55 16 18 C -0.16 -2.80 6.94 -10.07 -0.07 -2.87 16 19 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 20 C -0.14 -2.48 10.09 30.59 0.31 -2.18 16 21 C -0.19 -4.08 6.52 -10.07 -0.07 -4.15 16 22 H 0.11 2.40 8.05 -2.39 -0.02 2.38 16 23 C -0.17 -7.57 9.14 22.15 0.20 -7.37 16 24 C -0.20 -10.16 9.74 22.48 0.22 -9.94 16 25 H 0.28 14.13 8.30 -92.70 -0.77 13.37 16 26 H 0.10 5.77 6.16 -2.91 -0.02 5.75 16 27 H 0.11 4.53 8.06 -2.91 -0.02 4.50 16 28 H 0.39 12.00 8.58 -92.70 -0.80 11.21 16 29 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.11 4.47 6.17 -2.91 -0.02 4.45 16 36 H 0.09 4.64 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -61.95 295.02 3.21 -58.74 By element: Atomic # 1 Polarization: 32.93 SS G_CDS: 0.28 Total: 33.21 kcal Atomic # 6 Polarization: -63.69 SS G_CDS: 2.33 Total: -61.35 kcal Atomic # 7 Polarization: -71.77 SS G_CDS: -1.43 Total: -73.20 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Total: -61.95 3.21 -58.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378949180.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.590 kcal (2) G-P(sol) polarization free energy of solvation -61.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds