Wall clock time and date at job start Mon Mar 30 2020 05:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99882 * 2 1 4 4 H 1.48502 * 109.47041 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47363 * 299.99739 * 3 2 1 6 6 H 1.48502 * 109.47026 * 60.00233 * 3 2 1 7 7 C 1.37878 * 119.99681 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99713 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00359 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47204 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47268 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47268 * 179.97438 * 11 10 9 13 13 N 1.46500 * 109.47224 * 179.97438 * 12 11 10 14 14 C 1.36831 * 125.06347 * 265.30395 * 13 12 11 15 15 C 1.34242 * 109.92830 * 180.14700 * 14 13 12 16 16 C 1.46491 * 106.99712 * 359.60332 * 15 14 13 17 17 C 1.39630 * 134.02857 * 180.21673 * 16 15 14 18 18 C 1.36627 * 119.76400 * 179.97438 * 17 16 15 19 19 C 1.38830 * 120.52420 * 0.03970 * 18 17 16 20 20 C 1.37746 * 120.67032 * 359.97438 * 19 18 17 21 21 C 1.37685 * 125.06129 * 85.00172 * 13 12 11 22 22 H 0.96999 * 120.00005 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.47227 * 59.99831 * 9 7 2 24 24 H 1.08994 * 109.47422 * 300.00166 * 9 7 2 25 25 H 1.08997 * 109.47098 * 60.00069 * 10 9 7 26 26 H 1.08998 * 109.47397 * 300.00066 * 10 9 7 27 27 H 1.08997 * 109.47088 * 59.99960 * 11 10 9 28 28 H 1.08998 * 109.46881 * 300.00279 * 11 10 9 29 29 H 1.09008 * 109.46973 * 60.00404 * 12 11 10 30 30 H 1.08998 * 109.47397 * 299.99963 * 12 11 10 31 31 H 1.07993 * 125.03787 * 0.02931 * 14 13 12 32 32 H 1.08002 * 126.50514 * 179.87275 * 15 14 13 33 33 H 1.07993 * 120.11544 * 0.02562 * 17 16 15 34 34 H 1.07994 * 119.73661 * 180.02562 * 18 17 16 35 35 H 1.08005 * 119.66510 * 180.02562 * 19 18 17 36 36 H 1.08006 * 120.11165 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 6 2.4744 -6.1500 -0.0008 13 7 1.7419 -7.4188 -0.0008 14 6 1.4288 -8.1456 1.1154 15 6 0.7587 -9.2550 0.7658 16 6 0.6240 -9.2323 -0.6927 17 6 0.0358 -10.0877 -1.6264 18 6 0.0810 -9.7750 -2.9556 19 6 0.7081 -8.6136 -3.3858 20 6 1.2951 -7.7558 -2.4819 21 6 1.2610 -8.0544 -1.1234 22 1 -0.4850 0.8400 -0.0004 23 1 0.6246 -2.5571 -0.8897 24 1 0.6240 -2.5567 0.8902 25 1 2.8718 -3.6043 0.8905 26 1 2.8719 -3.6044 -0.8894 27 1 0.8539 -5.0446 -0.8903 28 1 0.8532 -5.0451 0.8896 29 1 3.1011 -6.0928 0.8893 30 1 3.1011 -6.0919 -0.8907 31 1 1.6845 -7.8689 2.1275 32 1 0.3854 -10.0174 1.4336 33 1 -0.4540 -10.9928 -1.2990 34 1 -0.3745 -10.4367 -3.6774 35 1 0.7353 -8.3797 -4.4399 36 1 1.7809 -6.8549 -2.8265 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385267929.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:19 Heat of formation + Delta-G solvation = 36.137433 kcal Electronic energy + Delta-G solvation = -16241.409888 eV Core-core repulsion = 13690.034446 eV Total energy + Delta-G solvation = -2551.375442 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.21584 -37.13668 -35.22229 -33.09548 -31.72093 -30.16001 -28.83238 -27.84906 -24.93329 -22.75892 -22.12909 -21.34470 -20.22187 -19.97865 -16.92202 -16.36677 -16.28716 -15.38208 -14.91709 -14.70276 -14.48923 -13.86441 -13.73350 -13.08881 -12.79752 -12.61311 -12.32650 -12.11627 -11.81724 -11.57856 -11.23052 -11.07766 -10.81516 -10.69246 -10.60234 -10.52239 -9.77852 -9.63982 -9.35893 -9.08553 -8.38427 -8.09522 -7.55362 -6.02792 -4.05773 1.20599 1.71632 2.79565 2.94884 3.28671 3.36208 3.39975 3.99935 4.43113 4.73615 4.80254 4.89463 5.07438 5.19502 5.25006 5.32954 5.47272 5.47969 5.54041 5.70949 5.82844 5.88771 5.98257 6.06978 6.13492 6.31265 6.53249 6.60434 6.66717 6.78203 6.84386 6.89713 7.04216 7.33123 7.42138 7.63871 7.76964 7.96768 8.38592 9.01695 9.58671 11.08537 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.038749 B = 0.003921 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.423096 B = 7138.553752 C = 7472.901319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.107 4.107 11 C -0.134 4.134 12 C 0.107 3.893 13 N -0.478 5.478 14 C 0.057 3.943 15 C -0.216 4.216 16 C -0.113 4.113 17 C -0.076 4.076 18 C -0.151 4.151 19 C -0.105 4.105 20 C -0.123 4.123 21 C 0.099 3.901 22 H 0.260 0.740 23 H 0.015 0.985 24 H 0.015 0.985 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.166 0.834 32 H 0.143 0.857 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.562 -18.946 -1.697 19.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.172 4.172 12 C -0.014 4.014 13 N -0.160 5.160 14 C -0.069 4.069 15 C -0.241 4.241 16 C -0.117 4.117 17 C -0.094 4.094 18 C -0.171 4.171 19 C -0.125 4.125 20 C -0.144 4.144 21 C -0.008 4.008 22 H 0.070 0.930 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.183 0.817 32 H 0.161 0.839 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.140 0.860 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.611 -18.518 -1.658 18.774 hybrid contribution 0.365 1.092 0.075 1.154 sum 2.976 -17.426 -1.583 17.749 Atomic orbital electron populations 1.69977 1.06086 1.26533 1.50825 1.25038 0.94846 0.99314 0.95302 0.86542 0.80090 0.83789 0.77622 1.19735 1.20972 1.20987 1.21288 0.93043 0.91082 1.50602 0.92640 1.19088 0.93960 0.91277 0.97281 1.21585 0.99161 0.93357 1.00440 1.22077 0.98176 0.94244 1.02711 1.22044 0.94646 0.80916 1.03819 1.44248 1.47442 1.19777 1.04487 1.21851 1.00761 0.92814 0.91434 1.21607 1.08971 1.00632 0.92929 1.19239 1.02996 0.95801 0.93702 1.20213 0.98664 0.98379 0.92188 1.20575 1.02800 0.98190 0.95489 1.20775 0.98394 0.94468 0.98847 1.20113 1.03727 1.00976 0.89538 1.18296 0.99933 0.93939 0.88621 0.93019 0.96618 0.96624 0.93155 0.93178 0.91832 0.91804 0.89363 0.89852 0.81662 0.83903 0.86452 0.86403 0.85993 0.86238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.06 13.29 55.43 0.74 -26.33 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.07 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 10 C -0.11 -2.11 5.15 -26.73 -0.14 -2.24 16 11 C -0.13 -2.22 5.54 -26.73 -0.15 -2.36 16 12 C 0.11 1.43 6.00 -4.04 -0.02 1.40 16 13 N -0.48 -6.70 2.78 -114.43 -0.32 -7.01 16 14 C 0.06 0.71 11.27 -16.73 -0.19 0.53 16 15 C -0.22 -2.72 11.08 -37.67 -0.42 -3.14 16 16 C -0.11 -1.59 6.37 -105.14 -0.67 -2.26 16 17 C -0.08 -0.94 10.05 -39.64 -0.40 -1.33 16 18 C -0.15 -1.75 9.97 -39.94 -0.40 -2.14 16 19 C -0.11 -1.28 10.01 -39.54 -0.40 -1.67 16 20 C -0.12 -1.70 10.00 -39.43 -0.39 -2.09 16 21 C 0.10 1.47 6.81 -83.99 -0.57 0.89 16 22 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.09 1.02 8.12 -51.92 -0.42 0.60 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.17 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 34 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 36 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 308.24 15.07 4.65 4.65 Total: -1.00 -31.59 308.24 -9.71 -41.30 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -5.46 Total: -1.61 kcal Atomic # 6 Polarization: -23.28 SS G_CDS: -4.29 Total: -27.57 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 0.42 Total: -33.34 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.59 -9.71 -41.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385267929.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.435 kcal (2) G-P(sol) polarization free energy of solvation -31.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds