Wall clock time and date at job start Mon Mar 30 2020 05:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99882 * 2 1 4 4 H 1.48502 * 109.47041 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47363 * 299.99739 * 3 2 1 6 6 H 1.48502 * 109.47026 * 60.00233 * 3 2 1 7 7 C 1.37878 * 119.99681 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99713 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00359 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47204 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47268 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47268 * 179.97438 * 11 10 9 13 13 N 1.46500 * 109.47224 * 179.97438 * 12 11 10 14 14 C 1.36831 * 125.06347 * 265.30395 * 13 12 11 15 15 C 1.34242 * 109.92830 * 180.14700 * 14 13 12 16 16 C 1.46491 * 106.99712 * 359.60332 * 15 14 13 17 17 C 1.39630 * 134.02857 * 180.21673 * 16 15 14 18 18 C 1.36627 * 119.76400 * 179.97438 * 17 16 15 19 19 C 1.38830 * 120.52420 * 0.03970 * 18 17 16 20 20 C 1.37746 * 120.67032 * 359.97438 * 19 18 17 21 21 C 1.37685 * 125.06129 * 85.00172 * 13 12 11 22 22 H 0.96999 * 120.00005 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.47227 * 59.99831 * 9 7 2 24 24 H 1.08994 * 109.47422 * 300.00166 * 9 7 2 25 25 H 1.08997 * 109.47098 * 60.00069 * 10 9 7 26 26 H 1.08998 * 109.47397 * 300.00066 * 10 9 7 27 27 H 1.08997 * 109.47088 * 59.99960 * 11 10 9 28 28 H 1.08998 * 109.46881 * 300.00279 * 11 10 9 29 29 H 1.09008 * 109.46973 * 60.00404 * 12 11 10 30 30 H 1.08998 * 109.47397 * 299.99963 * 12 11 10 31 31 H 1.07993 * 125.03787 * 0.02931 * 14 13 12 32 32 H 1.08002 * 126.50514 * 179.87275 * 15 14 13 33 33 H 1.07993 * 120.11544 * 0.02562 * 17 16 15 34 34 H 1.07994 * 119.73661 * 180.02562 * 18 17 16 35 35 H 1.08005 * 119.66510 * 180.02562 * 19 18 17 36 36 H 1.08006 * 120.11165 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 6 2.4744 -6.1500 -0.0008 13 7 1.7419 -7.4188 -0.0008 14 6 1.4288 -8.1456 1.1154 15 6 0.7587 -9.2550 0.7658 16 6 0.6240 -9.2323 -0.6927 17 6 0.0358 -10.0877 -1.6264 18 6 0.0810 -9.7750 -2.9556 19 6 0.7081 -8.6136 -3.3858 20 6 1.2951 -7.7558 -2.4819 21 6 1.2610 -8.0544 -1.1234 22 1 -0.4850 0.8400 -0.0004 23 1 0.6246 -2.5571 -0.8897 24 1 0.6240 -2.5567 0.8902 25 1 2.8718 -3.6043 0.8905 26 1 2.8719 -3.6044 -0.8894 27 1 0.8539 -5.0446 -0.8903 28 1 0.8532 -5.0451 0.8896 29 1 3.1011 -6.0928 0.8893 30 1 3.1011 -6.0919 -0.8907 31 1 1.6845 -7.8689 2.1275 32 1 0.3854 -10.0174 1.4336 33 1 -0.4540 -10.9928 -1.2990 34 1 -0.3745 -10.4367 -3.6774 35 1 0.7353 -8.3797 -4.4399 36 1 1.7809 -6.8549 -2.8265 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385267929.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:18 Heat of formation + Delta-G solvation = 20.878942 kcal Electronic energy + Delta-G solvation = -16242.071546 eV Core-core repulsion = 13690.034446 eV Total energy + Delta-G solvation = -2552.037100 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.17944 -38.13100 -36.74436 -34.87696 -33.13073 -31.38179 -29.84803 -29.28616 -26.58303 -24.10072 -23.31986 -22.35121 -21.89159 -20.98316 -18.48445 -17.92414 -17.32244 -16.52959 -16.29704 -16.25414 -15.79757 -14.91776 -14.79890 -14.52615 -14.15061 -13.87934 -13.61997 -13.53131 -13.40772 -12.88617 -12.53441 -12.52049 -12.30681 -12.22154 -12.16466 -11.70250 -11.49305 -11.38575 -11.14539 -10.58979 -10.53539 -9.07491 -8.52862 -8.22207 -6.34319 0.25341 0.74481 1.39142 1.39300 1.52803 1.83547 1.96970 2.39448 3.03081 3.10952 3.74801 3.78492 3.96368 4.03140 4.16697 4.28710 4.31802 4.35779 4.60093 4.63073 4.65067 4.77714 4.82299 4.98779 5.01741 5.09741 5.20473 5.21248 5.23031 5.50132 5.60118 5.70276 5.72882 5.82879 5.90217 5.96770 6.21229 6.36826 6.45281 6.83836 7.35751 8.89842 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.038749 B = 0.003921 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.423096 B = 7138.553752 C = 7472.901319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.259 1.259 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.021 3.979 10 C -0.093 4.093 11 C -0.120 4.120 12 C 0.116 3.884 13 N -0.487 5.487 14 C 0.048 3.952 15 C -0.224 4.224 16 C -0.138 4.138 17 C -0.084 4.084 18 C -0.154 4.154 19 C -0.109 4.109 20 C -0.147 4.147 21 C 0.069 3.931 22 H 0.263 0.737 23 H -0.015 1.015 24 H -0.012 1.012 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.044 0.956 28 H 0.055 0.945 29 H 0.113 0.887 30 H 0.090 0.910 31 H 0.194 0.806 32 H 0.166 0.834 33 H 0.140 0.860 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.765 -19.673 -1.581 20.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.183 1.183 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.082 0.918 9 C -0.016 4.016 10 C -0.131 4.131 11 C -0.159 4.159 12 C -0.005 4.005 13 N -0.169 5.169 14 C -0.077 4.077 15 C -0.248 4.248 16 C -0.143 4.143 17 C -0.103 4.103 18 C -0.172 4.172 19 C -0.128 4.128 20 C -0.167 4.167 21 C -0.037 4.037 22 H 0.072 0.928 23 H 0.003 0.997 24 H 0.007 0.993 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.131 0.869 30 H 0.109 0.891 31 H 0.211 0.789 32 H 0.183 0.817 33 H 0.158 0.842 34 H 0.164 0.836 35 H 0.162 0.838 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.823 -19.267 -1.540 19.703 hybrid contribution -0.085 1.262 0.001 1.265 sum 3.737 -18.005 -1.539 18.453 Atomic orbital electron populations 1.70118 1.07977 1.27741 1.51817 1.26040 0.95756 1.03599 0.94710 0.85368 0.79172 0.78575 0.77752 1.18267 1.20465 1.20380 1.21760 0.93699 0.92267 1.50338 0.91767 1.19025 0.94548 0.93528 0.94476 1.21358 0.97921 0.92442 1.01413 1.21852 0.98325 0.94315 1.01368 1.21899 0.93608 0.79566 1.05412 1.44312 1.47939 1.19862 1.04834 1.22399 1.00432 0.92630 0.92198 1.21973 1.08868 1.01332 0.92651 1.19686 1.03523 0.96139 0.94917 1.20581 0.98366 0.98933 0.92386 1.20958 1.02136 0.98227 0.95924 1.21137 0.97532 0.94318 0.99783 1.20323 1.04904 1.01677 0.89822 1.18656 1.00922 0.94842 0.89257 0.92797 0.99675 0.99317 0.91779 0.92403 0.93761 0.92630 0.86907 0.89148 0.78885 0.81688 0.84234 0.83565 0.83838 0.86371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.79 13.29 21.45 0.28 -57.50 16 2 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 3 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 4 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.54 -30.90 9.11 25.60 0.23 -30.67 16 8 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 9 C 0.02 1.13 4.97 29.85 0.15 1.28 16 10 C -0.09 -3.65 5.15 30.59 0.16 -3.49 16 11 C -0.12 -3.99 5.54 30.59 0.17 -3.82 16 12 C 0.12 2.97 6.00 86.38 0.52 3.49 16 13 N -0.49 -13.27 2.78 -515.93 -1.43 -14.71 16 14 C 0.05 1.13 11.27 83.00 0.94 2.07 16 15 C -0.22 -5.33 11.08 23.51 0.26 -5.07 16 16 C -0.14 -3.80 6.37 -20.20 -0.13 -3.93 16 17 C -0.08 -1.96 10.05 22.23 0.22 -1.74 16 18 C -0.15 -3.28 9.97 22.03 0.22 -3.06 16 19 C -0.11 -2.53 10.01 22.30 0.22 -2.30 16 20 C -0.15 -4.05 10.00 22.37 0.22 -3.83 16 21 C 0.07 2.05 6.81 39.03 0.27 2.32 16 22 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 23 H -0.02 -0.88 8.14 -2.38 -0.02 -0.90 16 24 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 25 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.06 2.16 8.14 -2.39 -0.02 2.15 16 27 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.11 2.34 8.12 -2.38 -0.02 2.32 16 30 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.19 3.18 8.06 -2.91 -0.02 3.16 16 32 H 0.17 2.99 8.06 -2.91 -0.02 2.96 16 33 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 34 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 35 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 36 H 0.12 3.13 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -69.05 308.24 5.82 -63.23 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 1.03 Total: 11.23 kcal Atomic # 6 Polarization: -52.40 SS G_CDS: 3.91 Total: -48.49 kcal Atomic # 7 Polarization: -71.06 SS G_CDS: -1.15 Total: -72.21 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -69.05 5.82 -63.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385267929.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.108 kcal (2) G-P(sol) polarization free energy of solvation -69.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds